Array 1 26010-23916 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKN01000080.1 Neisseria meningitidis strain P3965 P3965_scaffold27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 26009 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25943 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25877 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25811 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 25745 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 25679 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 25601 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 25535 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 25469 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 25403 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 25337 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 25271 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 25205 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25139 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25073 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 25007 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 24941 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 24875 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24809 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24743 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 24677 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 24611 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 24545 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 24479 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 24413 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 24347 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 24281 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 24215 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 24149 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 24083 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 24017 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 23951 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 32 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //