Array 1 63946-63655 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBW01000028.1 Algoriphagus terrigena DSM 22685 G459DRAFT_scaffold00027.27_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 63945 28 100.0 38 ............................ TGTAAGGGAAAATCTTCACCTGCTCCAGGAGCCGATAC 63879 28 100.0 38 ............................ TTCTGTGAAGACGCAAGTCGAGGAAGCCAAGGCGGATC 63813 28 100.0 37 ............................ TGTGGTTTGAGGGCAAGATGCACATCATGCTCCCTCC 63748 28 100.0 38 ............................ GAAAACACGTCAGTTAACATGCGGTAGAACTTGCGCGC 63682 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 99.3 38 CTTCAATCGCACCATACTGGAATTGAAA # Left flank : | # Right flank : TTAAACACAACCTTAACAAAGGGAGTAAAAAGCTTAGGAAATGGCCCCAACCTGCACATAATCATCTCTATGTTGACGATCTTCCCGAGCATCTGAGTAAACGAAAAATTTATATTATTGGCGAAAAAAGGAACCGTGGATATTGCGATACTTTGTCCTCGTGGTTGCAACGATCTGATTCAACTAAATCTTCTCAAAGGAGCAAGTCCACGCTGGTGTTACTAAGTCACCAAGAACAACAAAATAATGGTCAAAGCTTCTGTTTGGAGAAATACAGGTTAAAAAAAGCCACTTCTACGTTCACAAGAGCAAAATCATTTGGGTGTAACTGCCGAAACAATCGATTTGAAAATCGGAGGTGACAGTCAACTACCTTCGGGAATTAGCTGGAATTTCAACTCCCACCCAACAATCCTGACCAATTCTCAATGTTTCATTCTAAGGACTTAAAAAAATTAAACAAATCTCTTAGAAATGATTCTTTTTTCTTATGTAGATCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATCGCACCATACTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 53-1264 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBW01000059.1 Algoriphagus terrigena DSM 22685 G459DRAFT_scaffold00057.57_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 53 26 100.0 40 .......................... CCTATCAACTCGCCGCACGCCTTGTCGACTCCTCCGGCTC 119 26 92.3 40 ...........G.T............ TTCATTTTCAAATCAAGTTTGGGATCCGGGAACCGAACCT 185 26 92.3 40 .........A.....A.......... CTTCATTACATGATCGACATCGAGACCCTCGACGTCACCT 251 26 92.3 39 .........A.....A.......... CTGTTGAAACGATGTTGAAACCGATATGTCAAAAACATC 316 25 92.3 40 .....T......-............. CACAAAGGTCAGTGACTGGGGCTGTTGGAGGATGGCACTC 381 26 92.3 40 ............C..A.......... ATAGAAGATCTCAAACTGCTCGAAAAGCATCCCGTGGCCT 447 26 100.0 40 .......................... TGCGAAATAGGCAAGTTCGTTGGTTGCGCCTGAGATGGTT 513 26 100.0 40 .......................... TTTGGCCCGAGATGAAGAAGCGGAGTATTTCACTGATCCT 579 26 100.0 39 .......................... TATCTGGTAGTATTTCATAAAATCCGACACCCCGTTCTC 644 26 92.3 40 ............AT............ CTCTGTGTAGATGAAGTAGTGATATCCGTCTACCTTCCTC 710 26 100.0 40 .......................... TGCGGCGAGCCTCTGGACACAAGCGTATCCGAGCGATCCT 776 26 96.2 40 ...G...................... TTGAGTTGGCCTCATTCGCTTCTAAGTACTCCAGACCCCT 842 26 96.2 40 ...............C.......... TCAGTATGTCCGTCCGGTATGGAGCACGGCGGGGACTCCT 908 26 96.2 41 ...............C.......... TGGGACTTGATGCAACTCACATGCGTGTCTTTGATCGACCT 975 26 96.2 40 ...............C.......... TTAGCTTGGAGCGCCTGATTAAGGCTGCCGGCACTCTCCT 1041 26 100.0 41 .......................... TATAGCAAGCCTGTAGCCATTGTGCCGTCTTCTGCATGCCT 1108 26 100.0 40 .......................... TGACATACCCTCGGATCTCCTTGATGGTATTGACTGACCT 1174 26 100.0 40 .......................... TAAAATTATATTGTGTTGGAGTTCCCGGAACATTCAACCT 1240 25 96.2 0 .........................- | ========== ====== ====== ====== ========================== ========================================= ================== 19 26 96.6 40 TCAATCGCACCATACTGGAATTGAAA # Left flank : CCGGAATTGAAATGACTTCAGCTTCGCCCTGCATCTTGATCTCTGACCACCTT # Right flank : | # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATCGCACCATACTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 1811-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBW01000054.1 Algoriphagus terrigena DSM 22685 G459DRAFT_scaffold00052.52_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1810 28 96.4 38 .................C.......... TAAGCGATCGCCGGATTCTTCAACATCTCGGAGATCAC 1744 28 96.4 38 .................C.......... TTGTACTTCTTGCTGTACAGCTCTTAGAGGGGATGCTG 1678 28 100.0 37 ............................ TAGGGAAAGGGGAAACTAATAAAAATGATTCAGTGGC 1613 28 96.4 38 ........................T... CTAGAATGCGAAGACCCGGAGCCTGAATTCTTTATTTC 1547 28 85.7 38 AC........G....T............ TTGAAAATAATAATCTGGATTATGTTGAACCTCTTTAC 1481 28 96.4 38 .................C.......... TGACTTCAGCTTCGCCCTGCATCTTGATCTCTGACCAC 1415 28 100.0 37 ............................ CCTATCAACTCGCCGCACGCCTTGTCGACTCCTCCGG 1350 28 92.9 38 .............G.T............ TTCATTTTCAAATCAAGTTTGGGATCCGGGAACCGAAC C [1348] 1283 28 92.9 38 ...........A.....A.......... CTTCATTACATGATCGACATCGAGACCCTCGACGTCAC 1217 28 92.9 37 ...........A.....A.......... CTGTTGAAACGATGTTGAAACCGATATGTCAAAAACA 1152 27 85.7 37 TC.....T......-............. CACAAAGGTCAGTGACTGGGGCTGTTGGAGGATGGCA 1088 28 92.9 38 ..............C..A.......... ATAGAAGATCTCAAACTGCTCGAAAAGCATCCCGTGGC C [1085] 1021 28 100.0 38 ............................ TGCGAAATAGGCAAGTTCGTTGGTTGCGCCTGAGATGG 955 28 96.4 38 T........................... TTTGGCCCGAGATGAAGAAGCGGAGTATTTCACTGATC 889 28 100.0 36 ............................ TATCTGGTAGTATTTCATAAAATCCGACACCCCGTT 825 28 92.9 37 ..............AT............ CTCTGTGTAGATGAAGTAGTGATATCCGTCTACCTTC C [822] 759 28 100.0 38 ............................ TGCGGCGAGCCTCTGGACACAAGCGTATCCGAGCGATC C [757] 692 28 96.4 38 .....G...................... TTGAGTTGGCCTCATTCGCTTCTAAGTACTCCAGACCC 626 28 96.4 38 .................C.......... TCAGTATGTCCGTCCGGTATGGAGCACGGCGGGGACTC 560 28 96.4 39 .................C.......... TGGGACTTGATGCAACTCACATGCGTGTCTTTGATCGAC 493 28 96.4 38 .................C.......... TTAGCTTGGAGCGCCTGATTAAGGCTGCCGGCACTCTC 427 28 100.0 39 ............................ TATAGCAAGCCTGTAGCCATTGTGCCGTCTTCTGCATGC 360 28 100.0 38 ............................ TGACATACCCTCGGATCTCCTTGATGGTATTGACTGAC 294 28 100.0 38 ............................ TAAAATTATATTGTGTTGGAGTTCCCGGAACATTCAAC 228 28 100.0 39 ............................ TATGGCTGGACAAGCTGGCAGAGCTGAGAGAAAAGAAAC 161 28 100.0 38 ............................ TAAGGAACTTCAGGACCTGGTGCTAAAGCGGAAGGGAC 95 28 100.0 38 ............................ TTCGATGAAAGTGTGATTACCCGTGATCCGCAGCGTGC 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 28 28 96.6 38 CTTCAATCGCACCATACTGGAATTGAAA # Left flank : A # Right flank : AT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATCGCACCATACTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 1016-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBW01000060.1 Algoriphagus terrigena DSM 22685 G459DRAFT_scaffold00058.58_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1015 29 100.0 38 ............................. AGGGAGAAACCTATCCATAATGAGATGAAAATGTAGGA 948 29 100.0 37 ............................. GAACGTAGAACGCCGCGACGCTGCAAAAGTATCATGC 882 29 96.6 37 .................C........... TACTTGGGGGAAGATGGGCAACCATATTCGGTTAATC 816 29 93.1 37 .................C......A.... TTAACACAGGCTGAAGTAATAAACGAAACATGGACCC 750 29 96.6 37 .................C........... AGGGCACCACCGGAGACTTCAGCACCATTCGGCTGAC 684 29 93.1 37 ............T....A........... TAGACGAATAGGACGTTGATCTCATCCTTATTGGCTG 618 29 100.0 37 ............................. GACGGATTCAACCCGACGGTAGGCGGCTCTCTCGACG 552 29 93.1 35 ..............C.........C.... CGGAAAGGCTGGAAGAGCTTCCCGGCGTTCTCCCA 488 29 89.7 35 .........T...C.T............. TGGACGATGGGCAATGACATCCGGCCGGAGATCGA C [486] 423 29 86.2 37 .......A........AA..........C GAAGTATGGAGAGTCCCTGTGGAGATCAACCTCAGAC 357 29 89.7 38 .C..........T..T............. ATCCCTGACGCAAGCGGATACCTGCTACAAATGTCTAC 290 29 96.6 37 .....G....................... CCACCTGGAGCTTCGTCAAAGAGGCCTACGCCGACCC 224 29 96.6 36 .................C........... CAAAAAGAGGCTGACAAAGTCAACCCAGATAGAAAC 159 29 89.7 37 .G.............TT............ ACCGAAATCAAAATCCCTCAGGACTATCCTATCCCTC C [157] 92 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 94.7 37 CTTCAATCGCACCATACTGGAATTGAAAT # Left flank : TTGTGCCCCG # Right flank : TGAGTACACAGTGACGGAGTTTCTGAAAGGGCTGAAACCTTCAATCGCACCATACCGGAATTGA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATCGCACCATACTGGAATTGAAAT # Alternate repeat : CTTCAATCGCACCATACCGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //