Array 1 27132-27876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000117.1 Leptospira noguchii strain 56189 Contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 27132 37 100.0 34 ..................................... CATGACGATCCGGGAGGACTAACGTGTCCTGGAC 27203 37 100.0 34 ..................................... TGGAATTATGAATTTCTTCAGAAGGTGTAGTTTC 27274 37 100.0 33 ..................................... ATCTTCAATCCGTGTCCCCTGTCCAATCCGTGT 27344 37 100.0 35 ..................................... ATTTTCATTTTTATGTTTTTGGATCTGTGAGATTA 27416 37 100.0 35 ..................................... CTCAGTTGCGGTTTTAAACCGAGTTTTGCCGTCTC 27488 37 100.0 34 ..................................... TTTCATGGTCAAGAGCCAAAGGAAGATATAAGAA 27559 37 100.0 33 ..................................... TCTCTGTTCTGCGAATTTTCCATTCTCGTCTCC 27629 37 100.0 34 ..................................... ATCTTGACCTCGCTAAGACATGAGTAGGGTTAAA 27700 37 100.0 34 ..................................... AGAAGACTCACTTGATCAATTACCTTCCTCCAAT 27771 37 100.0 31 ..................................... GAAGGCTATAATTTTTCAGATGCTCAGCCTG 27839 37 83.8 0 .....GC....C....C......A...A......... | A [27860] ========== ====== ====== ====== ===================================== =================================== ================== 11 37 98.5 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : TTCAATTTTCGTAGTAGTTCCCACATTAGACTGTTTCGGAACAAGTTCTTAAAGAATAATAGAGTTGTTGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACCGATTGAAAATTAATTTTCAATAAATCTAATGTTTTTAAAATAAACCTAATTTCAAAATTAGCAAAATCCAGAACACAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATATTATTGACCCCACAAAGACGATTATTACAATAAAACGCTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACTGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATAATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTATTTATATAGTTCCTTTGAAATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTGAGTGGTAGTTCCCACAGATTTTGTCGCATTACGGACTTTTAAATATTCATTTTTTGTAATTAGAATTTGTATGTAATAGTTCCCACATTTTATTTTTACGAAAAAATCAGGTTTTATAAAACAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTTTACCGGGTTTTTGGATATTTTGCGGTGATTTTACTTTTTATATTTTAATTCTGGGTAGCATTTTATTTGCATTTGCCCCCGTTTTCAGGAACAATTCAACACCAGCACACGTATAATTTAACTTCTTCTTTCAGAAAAGAGTAAAATCATCAAAATCCAATTCGATTTCCTGTTTAAAATTCTCTAAAAGTCTGCCTCAAGCCTAAAATGATCAAAATTTGATCATGGAAGATTTACAAATACCCAGATGTGGTGACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 15289-14966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000129.1 Leptospira noguchii strain 56189 Contig129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 15288 37 100.0 35 ..................................... GGAATCATTAAGTACTGAGGAACGTGAGGATTTAG 15216 37 100.0 33 ..................................... TCAAAAAGCGACAGCACTGTCGCTTTTTGATTA 15146 37 94.6 34 ..........T....G..................... TTATAAATACAAGTCCAAGCGCGGCGATTCCCGA 15075 37 100.0 36 ..................................... AATTTCCCACGCGTGGGAAATTTGGCTCATTCGAGA 15002 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.4 35 TTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAACA # Left flank : TTCCTTGGTTTAAAAAGGAAGTGGATTGAAACTATAGAATCCAAATACGGTAAACGTTTTCTAGA # Right flank : TTGAGATGAGTTTCGTTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACTATTTTAAAAAACCCTAGAATAATCTACATTTTAAGTAAAGATAAAGTATTTTCGAGATGGCTTTTACTAGTTCCTACAAAATTAGATACTCATAAATGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGGTAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCAAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTCTGAGTAGTATTTCTAAAAATTCTGTTTTACCATTTAGCCCTTGAACACAGA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 25842-26013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000136.1 Leptospira noguchii strain 56189 Contig136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 25842 37 100.0 33 ..................................... CGAAAACCATCGTCGAAAAAGCAAATCAGTTTT 25912 37 100.0 33 ..................................... TATAGAATCCAAATACGGTAAACGTTTTCTAGA 25982 32 86.5 0 ................................----- | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 95.5 34 GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Left flank : ATTGTAACTAAAGACAAAATATCACATTATGCTTCTTTCATGCAATTTATTGACTGGAGTTAAAAACGGGTTCGAATTCGCCTGGTTTTTTTTCTCTGAATTCACAGGATTGATGTGTAAATTATTAGATTGGGTTATTTATTATGTAGTCATAACTTTATAAATGAGTTTTTAGATTGAATTTCTACTAAACTTTTAAATCAATTCTCTGAAAATTTATCCCCTAGACATCCAGTTACTTAGCCGTAAAACTAAAGAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAATCGCTTTTTGCGAACCTGTTTCTCCTGATAAATTGCGGCCCATTCGCGCTCAAGCGAATAACCACCGTTTGTCGATTGAACCGTTTCGCTTAACATTTATACAGTATGTTGTCAACAGGTTCGCGATAATTATGTCTAAAAAGTCTAATAAAGCTTTCCCTAATGCATCAATTAGGGCCTGTGGCACCGCT # Right flank : | # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 114879-115627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000065.1 Leptospira noguchii strain 56189 Contig065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 114879 37 100.0 33 ..................................... TTACTCATCATACTAATGCAATTTATATAATAT 114949 37 100.0 34 ..................................... TGTTTTTCCTGCCTCTTCAGCTCTGCTCCGTATT 115020 37 100.0 35 ..................................... TGCTTTTTCAAGAATCGCTAACTTTACGATGTCTT 115092 37 100.0 34 ..................................... TTTTGATCTTTGACATACTCAATAACCCCTTTTT 115163 37 100.0 33 ..................................... TTCTGGTCGCACGTATCCATCTCCTCGATTGTC 115233 37 100.0 33 ..................................... CTCAGTTGAAAAAAAAGATTAGGACGAGACGGC 115303 37 100.0 35 ..................................... ACCTTGGATTTCATCGCTTCCGTTCATCTGAGTAC 115375 37 97.3 33 ....................................T TGTTGGATTGGTCTTGTTTTGCAGTTGGCAAAG 115445 37 100.0 36 ..................................... ATCCAACCAGGCAAACCCCTCATCTTCATAATCCGA 115518 37 91.9 35 .............GT............A......... ATTAAGAAACGACAGTGCTGTCGTTTCTTGGTTTT A [115538] 115591 37 86.5 0 .............................GA.C..CT | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 97.8 34 GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Left flank : GCAAAGAAAAAATATAGTTTTTCGCCTAACATCAGTTAAGAAAAAGTAGTAGCTTCTCTATACACTTATAATAACTGCTAAAAACTATATTTCGAATTTTTGTATGTTGTTTCTCAGAATTGATTTGTTAAATCGTAATTTGTGGTAGTTCCCACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCCAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACCTTTCAAATCCTGCTATAAGTTTTCCTTTGAGTAACCGATCCTTTACAATGAAATGCTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCGCTTGTATTGATTCGTTGTTTGGCGATTTGACAGCTTCGCTTAGCATTTGTTCAGCATGCTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCAACCTTATTAAGCCGCT # Right flank : GAGGAAATTCCTCAGTTGATTTTTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 3580-1256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000072.1 Leptospira noguchii strain 56189 Contig072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3579 37 100.0 34 ..................................... TCTCTAGTTCCGCTGAATCTGTTTTTGTAAAATC 3508 37 100.0 34 ..................................... AATATTCTAATTCCTTCATGTGATTTATTTTTTG 3437 37 100.0 35 ..................................... GCTTAACAAAGTCCCGGACTCGTTATCTTTGATTG 3365 37 100.0 34 ..................................... TCTTCCATCACGCCACCTCATCCACTCTGTAAGA 3294 37 100.0 35 ..................................... CATTCTCTGACCTATCTCTTGTTGCATCATCATGA 3222 37 100.0 33 ..................................... GATGAGGAATCGTTCGTTTCGTTCTTAATGGGA 3152 37 100.0 36 ..................................... TCCAAGGAGCGACATACAAATATCTCCTGCACTCAA 3079 37 100.0 34 ..................................... ATTCGAAACCTCTATTCATGCTCCGCCTGCTTCT 3008 37 100.0 35 ..................................... TCTCATCAATTGATAGAGTGCGTCGTGTACGAGAG 2936 37 100.0 34 ..................................... TAGAGATAATGCGATTAACACAGCATTAAACGAA 2865 37 100.0 34 ..................................... AGATTTTTACTGATTCTAAAAATCTTACAACCGG 2794 37 100.0 37 ..................................... AATCAATATACTTATACAATAATTCTGTAGTTAACAA 2720 37 100.0 35 ..................................... ATTGGAGCAGTTGCTGCATACAGACAATATGACAT 2648 37 100.0 33 ..................................... TTTTTTATAACAAATGGTTATGAAATAAAAATT 2578 37 97.3 34 .......................G............. TAGAATACGATGTTCTGAGATTATACCTGTATCA 2507 37 97.3 33 .......................G............. CATCCGATGCTTCTCAAAACGTTTTGGTGTTTT 2437 37 97.3 35 .......................G............. AGTTAAAGTGCCAGCCGATTCGATAAAATTAAATA 2365 37 97.3 37 .......................G............. AATCGAGTATTCGGAAAAAGCCTGGGAATGGATTCGT 2291 37 97.3 34 .......................G............. CGCGTTCCGCGTCGCTTAGATCGCTGGCGCTTGT 2220 37 97.3 34 .......................G............. AAATGCAAGAGCTGAATAGACGTTTTTTTGAGTG 2149 37 97.3 35 .......................G............. AGATTGTGTTGAACCGTATTCGTAGGGCGAGCGAG 2077 37 97.3 34 .......................G............. ATTGTTTTATCTATCACCAGGAGACAACGAGATT 2006 37 100.0 34 ..................................... CAAAATAAAATCTAACTGAAGTCATTGTCACAAT 1935 37 97.3 34 .......T............................. AATTCTAATGTGCTCATATGATTTATGTATGCAG 1864 37 97.3 35 .......T............................. GTGCTGATCTGATTTAAAATTTGCCCACGCGTCTA 1792 37 97.3 33 .......T............................. CTGTTTAGTTTCTTGTTGAACCATTTTGCAGAT 1722 37 97.3 38 .......T............................. TTTTCGTTCCAAGGCCAAATTTCGAAATGTAAGTGTGG 1647 37 97.3 34 .......T............................. TTTGAAGCGGGAATCCCTCCAGGAAACTCACGTT 1576 37 97.3 34 .......T............................. TATTTTTTGATAACGTTTGCTTTTTTGTGCTTTT 1505 37 97.3 34 .......T............................. CAAACATCACAATCGAAAAAAGATTTTCTCGATT 1434 35 94.6 33 ....................--............... TGGAGAATTCAGACTACTCACGGGGATACAATC 1366 36 97.3 38 ................-.................... TTTAAGTTTTCCTGGGGTATCAGAGTCCTTATTTGTGT 1292 37 91.9 0 .......T..T............G............. | ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 98.3 35 GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : TGGGGTATTTGTAGGATTGTTCTCAAAACTAAAAACTTTGCGAATGTCTATTGGTTGATAGGACTGTTTGTTTTATTGAGTTTAGATTCAATTGTTTTCAAACTGGAAATGGCATTTCAAAATCTCTGAAAATTCGTACAACCCGAGAAACATTTGTTTAAAATTTTAATTTGAGACTGCTTCTAAAAAATTCTTTTGCTTCTTTTCAAAAAATTTTAGTTAGGTGAGAACTTTAATTAGCTTAAATCTATCTTTCCTAGACTTCTTTGTTATAGGTTTGCCTTTGGGTAACCGATCTTTTAAAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCACTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : GTTGTAGATGTCAGTTCCTGCGTATTGAACTACTGTTTCTTCTTCTTGTTTGAAGAACTACATAATAGAGTGTCTAAAATTCCGTTCCTGAAACTGGATTCCTTTAAAAATTTATAGTACTCTAATATATAAGAAATACTATTTTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTATGACTGATTTCCATTGAACAAAAGTTATTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTTTATTTTTACAGACTGAGGTCTCTTTTTCGGAGAATGACTTGGTTTTATAAGTTTTACTGTGAAAATTTAGTATTTGTGGTAGTTCCCACAAATTAAGTCACATTGTAAATATACAGATTTTAAAATACTTTTTTATTTCAATTTCTGTATCAGTTTCCCAAATCAAAAAATTTTACTGAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : GTTTCTTCCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 2070-535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000066.1 Leptospira noguchii strain 56189 Contig066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2069 37 100.0 35 ..................................... GCTTATGATAACGTTTATATTTCTTCAACTCTATT 1997 37 100.0 33 ..................................... CTGGAGACGTCATCACCGTAATAAGAAAAAGAA 1927 37 100.0 35 ..................................... ATTCCCTTACACAAACCGTAATTTTGTTGAATAAA 1855 37 100.0 33 ..................................... ATTGCGAGATAGTTCGTCTATCAAAATCGCCGC 1785 37 100.0 33 ..................................... TTCTTCAGGCTTTTGAATAGTGTTTTGTATCAT 1715 37 100.0 35 ..................................... TGGGAGGTAGGACATAAACCCATCAAGGTCTTTGG 1643 37 100.0 35 ..................................... AATCTCGTCACTCAAAAAAACGTCTATTCAGCCCT 1571 37 100.0 33 ..................................... GTGATACTCAATGACCGTCTCTAAATGTTTTGC 1501 37 100.0 34 ..................................... TGTGACCTGGGTCCCTTCTACCGTGTAAGTTAAA 1430 37 100.0 34 ..................................... TTTAAAGTTGGTCGCGATTCGAACGTGCTCTTTG 1359 37 100.0 33 ..................................... TTGGATAGTTTTATCAGATGCAGTTTTTATGCT 1289 37 100.0 33 ..................................... TTTAATTTCTCGTTTTATAAAGCGTTGAATCAT 1219 37 100.0 35 ..................................... TTCAGGACCTTCCGAAAATTCTGTATCTTCGGAAT 1147 37 100.0 34 ..................................... TTTAAGAAAAGAAGCTTTTAATCTTAAAACTTTT 1076 37 100.0 37 ..................................... TTTTGTCTCTAGATTTTACTGCTTCGTCAAATTCGAG 1002 37 100.0 37 ..................................... ATTCAAAACTCGATAACCAGTTTTTTCCATCAATCTA 928 37 100.0 35 ..................................... ATCATCTCCTAAAAGGACTTCTTCCCCCTGGATTT 856 37 97.3 33 .................T................... ACAATCGAGGCGATTTCCGAAAAATTAGATCGC 786 37 97.3 34 .................T................... CGAAAGTTCTGGCCAATTGGATTTATATTTCTGG 715 37 97.3 33 .................T................... CGTTAGATAACATTGATTCAAAAGTTTTTTTAT 645 37 94.6 37 .................T.......A........... CTTGTAATTAGTGGATAAAGTTGTTTCTTTTTTTGAA 571 37 86.5 0 ..G...............T...A....A.......T. | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 98.8 34 ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Left flank : GATAAACCATAAATTCGAAAATACACAATCTATTAGAGCTTCTATATTTTTATAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAGAATAAAAAGATTTTTGAATGAAATTTAAGTTAAATTTCAAAATCAATCTTTTTAGTCACAGAAACCTAACAATCTGGAATCTAATTTTCTTGACTTTAAAAAGCAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATCAATGGCGGCCCTTTCGCGCTCCAGCAAGTAACCGCCATTTGTGGATTGGATGAGTTTGCTTAGCATTTATATAGCATGGTAAATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATAGATTAGGGCCTTTATAGCCGCT # Right flank : ATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAGTAGTCCCTGAAAAAGTGTTCAAAAGAATTCCAAACTTAAAAGTTGAGAATTGGTTCTAACTTTTAAAGAGGGCGATTACGCCTAACTTCTGCTTCTCGCTGCGTTCGGAATTGCTAATGCGAGCCCGCACTCCAGGCGTTGCCACATTTGTTTTGTTGTTAGGTGAAAGTAGATTATCGTCTTACTTTAAATCATTAAATTCACAGGTAATAACTCTATGGGAAGTATAAAAAATTGGGCTACTGGCCAATTATCCATTGTTTCTGAATGTTTAAGTTATTATTTTGCCTTTATAGCGGTTTTTAATTTTTTAACTAAAAATTATAGAGACTTGTTTAATTTTGAAGACATATTTTTAACGTGAGCAGGGCGTAACGCGAAAGGGATCGATGCGGGGTCAATAAATTGAATCTAAAGACGATTGTTGTATTATGTTTCCTGTATGCAATTTATTGACCAGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2981-4016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRC01000084.1 Leptospira noguchii strain 56189 Contig084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2981 37 100.0 36 ..................................... GATTTTTGCATTTCGATCACCACTCTTAATTCGAGA 3054 37 100.0 33 ..................................... GATTTATTGAAAGTGTTGATCAGTCATCTTACA 3124 37 100.0 35 ..................................... ATGTTAAGACCAAACTCCGGATTTGCAGTATCAAG 3196 37 100.0 36 ..................................... AACTTTGCGTGATATGTCTTTGCGAACTGCACCGGC 3269 37 100.0 36 ..................................... TCTTTTTAGAGACTAACACAGGCGAAATCAAAAGTA 3342 37 100.0 34 ..................................... CTAAAATTATGTTTTTTTAATATGCTGTCTATGT 3413 37 100.0 34 ..................................... AATGCAGATACCCTCATCGGAGCAGGAATAACAG 3484 37 100.0 34 ..................................... ATATTCTACCGTATGCGATACACTATCCGGTCGT 3555 37 100.0 34 ..................................... TTTTTATATGTGATTGATATTTCTGAGGCCTTCG 3626 37 100.0 35 ..................................... CGCAAATGGTGCAATACGAACTTCCGTCAAAATGT 3698 37 100.0 34 ..................................... CCTAAAATTATGTTTTTTTAATATGCTGTCTATG 3769 37 100.0 33 ..................................... TTGCTCCGAATCCACACACTTCCGTCTGTGTTC 3839 37 100.0 34 ..................................... GAAATTAAAAAAAGGTAAATACCACTGTCACCTA 3910 37 100.0 33 ..................................... AAAAAGCACTAAGCCTTTTTACTCCTAAATACA 3980 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 100.0 34 ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Left flank : AAATCTTTCGTAGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGTTCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAACACTTTTTGCGAACCTGTTTTTCCCGATTGATTGCCGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGCATAAATTAGTATCTTTGTGGCCGCT # Right flank : CAATTGTAATGCTAATCGCATCAGCTCTGCTTTTGATTTCTTTCTCTTATCAAAGAGCGGGTTGAAACGTCAAAAAAACGATTTATTAGAAAGAACTTTATTTTAGATTTTATAAATGCTTTCACTAAAAGTAGGATTTTAGGTAGTATATTATAAAATATAATTATATAACGTAAGTTAGACGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATATAAATCTATTGTTAAACTTTACAGTAAAATACAATTATGAGGCGCAGCTTGTGGGAACTTTATGTAAATTTTAATTTACTGTAAAGTTTTCAAAAATGTAGATTTGTTCTAAATCAAGTAAGTTGTGTTTTATCATATTTCCTGAATTGGAGATAACGTATTTTTGTAAATATAACGACAAACCTTGAATGATTCGATAAAATAGAAATCGCTTAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //