Array 1 9043-9338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669947.1 Megamonas funiformis strain Marseille-P3344T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9043 30 100.0 37 .............................. TGCTCCATGGTATAGCATTTGCCTGCCATGTTTTCTG 9110 30 100.0 36 .............................. GGATATAGCCAAATAGAAACAGGTGATAGACCTATA 9176 30 100.0 36 .............................. AGTTCCGCCAATGCACCTAAAATTGTAATAAAAAAT 9242 30 100.0 36 .............................. TCTGGACTTAATCTTAGCGTTCTAAAGTCGATGTTT 9308 30 80.0 0 ...............TT...A.T...A..A | A [9327] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.0 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : CAGAAAAGCCATAAGAATGATACAACTTTTCCCATGTAGAAATTGTACCAGTATTAGGAATGGAAAATTTGGCTGCTGATTGATTTAATGATAAATGATGTAGCCATTTATATTCAATAACTTTTTGCTTAAAGATAGGAGTATATTTACGATTTTTATGAAGAAGTTGTGGAATACCACCATGTTCATAATGAGATATCCATCTGCAAAGAGGAGCTATATCTGGCATGTTTAGAATTTTAGCTACATGAGAAATAGAATTTCCTTTTAAAACCATTTTAATTGCTTTAACTTTAAATTCATTTGAGTATTTAGTCATAAAAAAACTGCACCTCCAAAAGTTGTTTTGTGTCCAACTTTTGGGGTGCAGTTCACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATCACCATTATTGCTGGTAAAAAATATCAATATCCTTGTATATCAATGCTTTTAATAGTATAATAAAAATCACAAATACTGATTTTTCTATC # Right flank : ATAACTTTTCCACTATTTGATAAATATGTAGATAACTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTACTTTATTCTTTATTAGCTATACCCAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGACCCATACCTTTTAATTGTACAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCGACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAATAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATCTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCAATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 246979-250964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669948.1 Megamonas funiformis strain Marseille-P3344T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 246979 30 100.0 37 .............................. TTAACATTTTCTTCACCATACCCAAAACCTTTTAATA 247046 30 100.0 36 .............................. CATGGAACTTCTGAACCAAATGATTTAGCTTGTGGT 247112 30 100.0 36 .............................. TACATTGACTTTAAATTTTTTTCTAATTTATCTAGT 247178 30 100.0 36 .............................. AAAAGAAAAAACTGGTGAATATTCTGTTATTTTCCC 247244 30 100.0 35 .............................. TCTGAAGAACGTGCAAGCATCTTAAAACATATTTT 247309 30 100.0 37 .............................. CTTGATGAATTTGCAGTAAATTTTGATGAACTCCAAT 247376 30 100.0 36 .............................. TAGGAATGGTAATATAAAAACTAAAGGTAGTGTTAC 247442 30 100.0 37 .............................. ATTTTGACGCGGTTAATCTATTTTAAATACAGATTAA 247509 30 100.0 37 .............................. TGGTATATATAAATTTATTTAAACTAGGCACTAACTT 247576 30 100.0 37 .............................. CCAAAACGGTACTATACAGGGGAGAAAAAAGAGTACG 247643 30 100.0 38 .............................. AATCCAACGTTTGTTGTAGCGCCTACAACGGCAGTTTC 247711 30 100.0 36 .............................. TTTATTTTTACTGACTGAATAGCATAAATATTTTTA 247777 30 100.0 35 .............................. ATATCAGCTAAAGATAATACTTTGTCATTTATTTG 247842 30 100.0 36 .............................. AGGTTATCTTGCAATAAAATCATTTTTTATAATCCT 247908 30 100.0 35 .............................. CGAAAGTAACACGTGACGGTGGTCTTGTAGAATAT 247973 30 100.0 36 .............................. TTTTATACAATTCCACTAATCGCAAATTCTCCTGAT 248039 30 100.0 37 .............................. CGAGTTCCCGATTATCGTATCACGCTGGTTTGTTAAG 248106 30 100.0 36 .............................. CCATGCACGTTTATAATTTAGTAATGCGTTACAATA 248172 30 100.0 36 .............................. AGAGGGTTTGCAGATGCAGATAGCTCAGAATGGTTT 248238 30 100.0 37 .............................. CTGAAAACTAGTGACCTTGATGCATTTAAGAATTTCT 248305 30 100.0 35 .............................. GCAATATGCTAATGCATATCGAGATATGGGTCATG 248370 30 100.0 37 .............................. GGGGGCTAACCACCCCCTAAAAAAGTAAAAAAATGAA 248437 30 100.0 36 .............................. CTGTAAAGCTTAATTTGTTTTACAGTATTTTCATGG 248503 30 100.0 36 .............................. TAAAGCACAGCGAGAAGGGCATATAGCGTATTACAT 248569 30 100.0 36 .............................. CAATTCCCCATACCAGCACCAATTATCTTTAGACCA 248635 30 100.0 36 .............................. TTGTGGAATATAACACCTTGCATTTGGTGTTCTAAT 248701 30 100.0 37 .............................. TCTTGAATAATATTATCTTAAAATAATCAGGATTGTG 248768 30 100.0 36 .............................. TAACGTGGTATTTCTTTTGTTAGTGTTAAAACATAA 248834 30 100.0 36 .............................. TTTTCTGCAACTTTTATACTCAATTCCTGTTGACGA 248900 30 100.0 37 .............................. TTCTGATTTTCTTCTTGCTCTAATTGTGGTGTACTTT 248967 30 100.0 36 .............................. CAGAAATTTTTATTAATCTTTGTTCCAATGATGATG 249033 30 100.0 34 .............................. TAAATTTATTTAAATCCAACGATAAATCCATACT 249097 30 100.0 37 .............................. CTATAAACGGATATTCATGTTTAGGACTAGGAAAAAA 249164 30 100.0 34 .............................. CCAGTAAAACAAGGGTTAGAAATTTCAATCTTAT 249228 30 100.0 36 .............................. TTATTGATACAGCTCCAGCACTAGGCATTACTACAA 249294 30 100.0 36 .............................. GTAATTTCTTTTTCCTCTTTTTCTATTTCATCTATA 249360 30 100.0 36 .............................. CTGTTTTTCTGTTAGTTTTAAATCCTTAGCAAGTTG 249426 30 100.0 37 .............................. TTCGTTCAATATCGCCTTTTGCGTTATCCATCTTTGT 249493 30 100.0 35 .............................. TTATGTTTTTGATTGCTTTAACCAAAGGCTTAGCC 249558 30 100.0 36 .............................. AGAATTTGAGATAAAAAAACTTAAAACATATCTAAA 249624 30 100.0 36 .............................. TCATCAATATTATTAAATTCAGCCACAATCTTAAGC 249690 30 100.0 35 .............................. TGTTTTTCTACTTCACAAGGTGTAGCACCGCAACA 249755 30 100.0 36 .............................. TAAGAAAAAGCACTAAATAATATATCTAGTGCTTTT 249821 30 100.0 36 .............................. CATCTGCATTTATGGCCACACCATTATTTCCTAGTC 249887 30 100.0 36 .............................. TATTAAAATCAGTTTTGGGCATTGGACATATATGGT 249953 30 96.7 34 ............T................. CAGGTGTAGTTTGGGATGTTGAAATTGATAATAA 250017 30 100.0 37 .............................. TTATTAGGTGGAGGTGCTATAGTATCTAAATTATTTA 250084 30 100.0 35 .............................. ACGTAATGCGGGTTGTAGTGCGTTTGAAGCTTTTT 250149 30 100.0 36 .............................. AATAGAATATTATAAGAATAATCCAGACGCACCAAT 250215 30 100.0 34 .............................. ACTAGAAATAGTTCGCATTCCTCAGGATTTTTAG 250279 30 100.0 36 .............................. TTGGTAAATCTCTTAAAGTATTATATCTTTCTTCTA 250345 30 100.0 35 .............................. TTATGATTACTATTATTATAAAAAAATTTTTTTAT 250410 30 100.0 36 .............................. TTTATTAAATTTCTCATTTCTTCAACTCCATAAGCT 250476 30 100.0 34 .............................. CATTCATACATTTTTACTCACCTCTGGAAATATT 250540 30 100.0 37 .............................. TACAGACCATCATCAAGATTAAAGACCTTGCCATTCA 250607 30 100.0 34 .............................. ATGGTAATTACGCAACACGCAATGACCAATTTTT 250671 30 100.0 36 .............................. TAAATTATTTTGCAGTTTAAGATATTGCCTTGTTCA 250737 30 100.0 36 .............................. TACATTTTAGATGGTTTTTGCCATGCTTCTAGTTTT 250803 30 100.0 37 .............................. CTAGTACTATAGGTATCTTTAAGATACTCTACAATCT 250870 30 100.0 35 .............................. GTAACGGAGAAAGCGATTATGAATACCAATTTTAC 250935 30 96.7 0 .......A...................... | ========== ====== ====== ====== ============================== ====================================== ================== 61 30 99.9 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : GAAATATCTACCCAACAATTAAATAGTAATAGGTTATTATCTGAAAAACAAATCATTTATATGTTAAATGTATTCTATAATAAAAGAGTTGATGTTTCTTTCTATAATCAAATTATTGATTGCTTTATCTATAAAATTTATATTTACTCCGACAAAATATGTATTGTCTATAACCTGAATAATAGTGATAAAGACGTGACTTACTCTGATATTAACGAACTATATAAAAGTTCGCACCTTAACTCATGCGGTTCACCATATGATTTATAAAATTAAAGCAACTATCAATGATAGTTGCTTTTTGTTTTTTGCTTAATAAAATTTTATTTACCATAAAATTACCAGCTAAAAATAAACAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTGTATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGC # Right flank : TCTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTCTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTATATACTCACGTGGTTTTGTATATTGTGGATATTCTAGAAGTCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACACCTGGAAGCATTCTTGATACAGCATCGATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCACCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 425066-423318 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669948.1 Megamonas funiformis strain Marseille-P3344T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 425065 30 100.0 35 .............................. ATGCAGGCTTCTAAGTCTTTTGCATCACAGTTTCT 425000 30 100.0 37 .............................. TATGAATGGATATATAATCTTCCTCATAATTTTTAAA 424933 30 100.0 36 .............................. TAGGTTTTTTATCTTTAGAACCGATGGCGAGTGGAA 424867 30 100.0 35 .............................. GGCGGTAAAGATAGCGGTGTTGTTCTTAACATGGC 424802 30 100.0 36 .............................. GTTTTTTCTATGGCTAAAAATTCACTGGGGCGAGTT 424736 30 100.0 36 .............................. TTGTCAATATCTGCTATTTTTATTCTATCCATAATG 424670 30 100.0 36 .............................. CGTCTAAACTTATCTAAGCCATTTGTTGTTACTGGA 424604 30 100.0 36 .............................. AAGTATAAGCATCTATCACAGTTTCCACCATGGAGG 424538 30 100.0 36 .............................. AGGCAAGATTATTTATATAATTGCGTTTAGTGAAAA 424472 30 100.0 38 .............................. TTATTACTGTTTTGGTCTGTATTATCATTTTCTTGTCC 424404 30 100.0 39 .............................. ATAGCATCACGCTTTGTTGCAAATACTTCACCAGCTTTT 424335 30 100.0 36 .............................. GTGCTGTACCACTTGGTAAATTAAAAGCGGGTAATG 424269 30 100.0 36 .............................. TAAAAAAAGGAGGCTTTAAAAATGCTGTGTGAGTAT 424203 30 100.0 35 .............................. AATGGTGGTAGTGTTAATGGTGAGGATATAAAAAA 424138 30 100.0 39 .............................. ATCCAGTAAATCAAGCAGTTCCAGGAGCAACAGCTCTGA 424069 30 100.0 36 .............................. TGATTAGCATTTTTATTTTCTCCTTTCTTTGTTTTA 424003 30 100.0 36 .............................. CATTTTTTCTCTATTATCTTGGGCTTATACAATTCA 423937 30 100.0 35 .............................. TCATTTGTGCTATTACTTGCGGATTTAACATTTTT 423872 30 100.0 35 .............................. TTTTGACTAATACCGCCACGCTTGGGTTTGCGGGC 423807 30 100.0 34 .............................. TGTAAGTATTTAGCATTATACCAATCTTCTTGAT 423743 30 100.0 38 .............................. TTAAATCCTTCTTTTAAAAAAATCGACCTAATAATCAT 423675 30 100.0 34 .............................. AGAGGGGCAAAAGTAAAAGTTATATTAGGAGAAA 423611 30 100.0 36 .............................. TTAAATATCATTTGTCTTATTGGAAAATCTACAATA 423545 30 100.0 36 .............................. AGTTGTTTTTGGAGAAAAACTTGGCGTATCTCGTGA 423479 30 100.0 36 .............................. TACTGTTAGAACAAATGATGATTTTTTACCAGGCAC 423413 30 96.7 36 ...............T.............. CCTTAATTGTCATTTAGCATATAAAAATTTTAAAGT 423347 30 86.7 0 A.......T........A........T... | ========== ====== ====== ====== ============================== ======================================= ================== 27 30 99.4 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : GCAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATTATTGGTATGGGCGGTATTGCAAGTGCAGAGGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTAGCAGTAGGAGCACATAACTTCATTGACCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACATAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAGTCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTATATAACTAATAAAAATCAAAATCACCTGGTAAAATTTTTTTATATCCTTGAATAACAAGATTTTAGAGACTATAATAAAAAAAGAAATATTAATAAATATAGG # Right flank : GAATGAGGAGAGATAAATAGTTGTGGAAAATATAAAAGATATAAAGAAAGTTATTATTGATATATGTTATCAAGAAGAGGTTACAAGACGCTATATTTTAGATTGTTATAATAAGAAATATAATAAAGAGGTACAAGAAGCAAGTTTTAATAGAATGATAAATAATAATAATGTTAAATTTAGTACATTAGTAGATATATTAGATTCTGTAGGTTATACAATAGATATTAGAAAAAAATTATAATAAGAGTTGTATTTATAAAAAAACTTATTGACAGTATATAAAGTTTGTGATATATTAAATTATGTTGTATTTGAGATGCAACGTATTCCACAAGAAGAAGTCACCGCTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1974142-1976217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669948.1 Megamonas funiformis strain Marseille-P3344T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1974142 30 100.0 34 .............................. TAAAGTTGATGAAGGTGTTCCAGGAAGTAATATG 1974206 30 100.0 38 .............................. TATAAACGATTTAGATGTTTATAAGCACAATTATAGCT 1974274 30 100.0 36 .............................. ATCTGTAATTTAAGGCTTTCGACTTTTTTAGCATCT 1974340 30 100.0 36 .............................. TCTCGTATCATGTCAACGCATTCGATAATTTTAATA 1974406 30 100.0 34 .............................. CTTATTTCTTTTTTTAGCACTTTAGATAATTTAG 1974470 30 100.0 35 .............................. ACTTTATCTTTAGGAATCCCTAATGCATATTGATT 1974535 30 100.0 37 .............................. TCATCTAATTCAATAAGTTCTATTGTATTTTCTTCAA 1974602 30 100.0 36 .............................. AGGTGCTAATGCTGTAACAGAAAAATTTATGAATAA 1974668 30 100.0 36 .............................. CCAAAACAAAAAACGAAGCCGTAGCAAAAGAACATC 1974734 30 100.0 36 .............................. AGTGGAGCAGAATTCTTAAACAGTCTCTCTAAAGCC 1974800 30 100.0 36 .............................. TGGAAGCGGTACGCTGTACGAAAAAGAACCCACAGT 1974866 30 100.0 36 .............................. ACATAGTATAGGGATTGGTCTTAACAGTGATGGACA 1974932 30 100.0 37 .............................. TCAAAAAAATCTCCATATAAATAAAATCTCAATAATA 1974999 30 100.0 38 .............................. GCAACACAATTTTTTATCGTAAATGTCCCAAAGATAAA 1975067 30 100.0 36 .............................. GTCTGTTTCTTAGCAAATGCAGAATTAGCAATCTTA 1975133 30 100.0 36 .............................. TGGATTATCCCACGCAAAATGAAAAGCTTTTACTTT 1975199 30 100.0 36 .............................. CTCCTTATATGTGGTATATATATATTATATATACAT 1975265 30 100.0 36 .............................. AACATTATCTGGTATTTTGGGGTTATTTTTACCATT 1975331 30 100.0 36 .............................. GACAATGGCTTTATTATTTAGACTTATTGAAAAATT 1975397 30 100.0 37 .............................. CTAATTTATGCAATTATGTTCCATCTTTTAAGAACTG 1975464 30 100.0 35 .............................. GATTTTGGATTTGATGAACTAATTAATGATTGTGA 1975529 30 100.0 34 .............................. ATGCTAAATTAGGGAAGTTATGGCTGTCTATATC 1975593 30 100.0 36 .............................. GTACTACAATAAGGGATAGCATTTCTATAAAAGAGT 1975659 30 100.0 36 .............................. TAGATATCTTCTTTATTTAACAGAGTAACGATAACA 1975725 30 100.0 36 .............................. TACCGCCAAAATATGGTGTATTCTCAAACATTTGCT 1975791 30 100.0 37 .............................. TAGGAACATTTAGGTTTAAATGGTAATGTACCAGCTT 1975858 30 100.0 36 .............................. ACTATTAGAAATATATTACGAAATATAAGTGGTTCT 1975924 30 100.0 36 .............................. GCAATATCCTGTAACAATCCATCATATCGTCTGCAA 1975990 30 100.0 37 .............................. GTGTTTTTTTTATCCCACCATCATAAATCCAATTCCA 1976057 30 100.0 36 .............................. TTGTTCATATTGTGAATTATTGTGAAACTATTAGTA 1976123 30 100.0 36 .............................. AGGTAAAGCTAAAGTAGTTTTTGATACTGATGAGGA 1976189 29 90.0 0 ................G....-....A... | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 99.7 36 GATTAACAGTAACAAAAGTTGTTTTTGAAT # Left flank : ATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTACGATGTAAATGAAAAGCGAGTGCAAAAGGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAGATAACACCATCAAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATAAGTATATGTATATAAACCCTTATAAATACAAGAGTTATAGCAAATTTCTTTCATTAAAGAAATAAATGCATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGTTTTTGAGCTATATTATAAAATATAAAGCCTTTAAAAACGAGG # Right flank : TGAACTTAGCAATAGAAATATATAGATATTTTAAAATAAAAAATGATAATAAATTATTATGAATAAATACATAAGCTATTAATAATTTTTATAGACTGAAAGGATTATTTTTGTTATAATATACAAACTATGACTTTGAAGGTATATATTTGACAAAAATAAAAATATTATTGGTTACTATTTGTATTATGGTGATGTCTACTATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAGCGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGTATTAGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACGATAAAGATCTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATGGCATAAACATAAGGATGTTGTTTTTTATAGAATGATATTCTTATGTTTTTTTATTAGATGAAACCTTAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAAGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 2174777-2171329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT669948.1 Megamonas funiformis strain Marseille-P3344T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2174776 30 100.0 36 .............................. TGATATACCCACTATAGCTGAATATATTAAATATTT 2174710 30 100.0 36 .............................. TAACAAGTAATAATACAATAATTAACATAATATATA 2174644 30 100.0 35 .............................. TAATAATTTATAGAACAAGGAGATAAGAAAATGAC 2174579 30 100.0 34 .............................. TTGTGCCAGTAATAGTGGCACAACAGCTACCAGA 2174515 30 100.0 36 .............................. TTTGTATTATTTATTTCGTTCAAAAAATTACCCTTC 2174449 30 100.0 37 .............................. GCAAATACTGCTTCACAGGTAAATGCTAATTTAGAGA 2174382 30 100.0 36 .............................. ATATTTCTTGAGCTTTTTCCCATGTTATTTCTTCTA 2174316 30 100.0 36 .............................. GTGGCAATATCTTCTTCTAATTTTCCATCTAAAAAC 2174250 30 100.0 35 .............................. TTATAAATACGATTTTTAAGTTGTAAGTTTTCGTT 2174185 30 100.0 36 .............................. TTAAAGCGTATTTAAACATTAAACTAAGAGTAGAAC 2174119 30 100.0 36 .............................. TATTCTAATTCATGTTTTTATTCATCAACTCAACAA 2174053 30 100.0 38 .............................. TATTTAAAGCAAATTTCCAACATTCTTGCCACTTAACA 2173985 30 100.0 36 .............................. ATAAAAAATTTTTGCTCTTAATATAAAAAATCTCAT 2173919 30 100.0 36 .............................. AGAATTTGAGATAAAAAACTTAAAACATATCTAAAA 2173853 30 100.0 35 .............................. TAAATGACATTTATTTTTATTAAAAACCAATAAAC 2173788 30 100.0 37 .............................. CACACCACCATATCCCACTTCCAATTTCTGATAGTGC 2173721 30 100.0 35 .............................. TAGTTTTTCTGTGGCTTCGATTTTTTTAGTGGGCA 2173656 30 100.0 36 .............................. TCTACCTCTCTTAACTGCAATTGAAAAGGATATTTT 2173590 30 100.0 36 .............................. CTTTAGTAGAAATAAAATCAAAGAAATTAATAAGTT 2173524 30 100.0 38 .............................. CCTTCTTTCTATTGGTATATACAAATTTATTTAAACTA 2173456 30 100.0 36 .............................. TAAATAAACGGAGCCGAGAGGAAATTTTTGTAAAGA 2173390 30 100.0 35 .............................. AAAAAAGTCTTTCCTCTTTCTAGGTGTACTATTTG 2173325 30 100.0 36 .............................. TCTGTTTTATCAGCAATTCCACATAAGGCTTTTAAA 2173259 30 100.0 36 .............................. ACTTATAGAAACACTAGAACAAGGATTAAATTAATA 2173193 30 100.0 36 .............................. TAAAAAGAAAGATAAAGTGTGGAATCTTACTGAACA 2173127 30 100.0 34 .............................. AGGTGATTTTTCCAAACAGATTGAAGCCAATAAA 2173063 30 100.0 37 .............................. CACTGATATAGTTTTGCATTTTATTATTCCCCTCTTA 2172996 30 100.0 37 .............................. CAGAATGGCAATTTTTTGTGTTTAAATCTCTTTTTAC 2172929 30 100.0 36 .............................. AAAACTAGCAAATAATCATCGTTTATCTTTTCTAGC 2172863 30 100.0 35 .............................. ACAGGCAGTAAATAATTCCCTATTTCACCCATTTG 2172798 30 100.0 36 .............................. AAAAAATTGTAGCGGTTCGGAGCTGGTGCAGGAAAT 2172732 30 100.0 34 .............................. AGATAAAAAAGCAGAGCGTATCTGTAGGTATAAG 2172668 30 100.0 35 .............................. TATATTTGTGCTAGATTATATTTTATTGTTTCTGG 2172603 30 100.0 36 .............................. AAAGCACTTTCTATTAGTTCTACGTAATTTGTAGTA 2172537 30 100.0 36 .............................. TTGATAAATGAACGATAACCCTTTCCACCAATAGCA 2172471 30 100.0 34 .............................. AGAATTTGAGATAAAAAAACTTAAAACATATCTA 2172407 30 100.0 36 .............................. AGTTTTAAAATTGGTGCTGTCTTTACTGGATATTTT 2172341 30 100.0 36 .............................. AACGACATTCAGATTTAGGCACGGAATATAAGGTTT 2172275 30 100.0 36 .............................. AGTTTTAAAATTGGTGCTGTCTTTACTGGATATTTT 2172209 30 100.0 34 .............................. TAGGCTTTTATATCTTCTATTTTTAAATAAGCTC 2172145 30 100.0 35 .............................. ACTACTCCTGCTTCACTGGAAAACTGATATCTTCC 2172080 30 100.0 33 .............................. TATCTTCAATTTCTTTATCAATCATGGCTCTGT 2172017 30 100.0 34 .............................. CTATAAAAGTATTGAGTAAAGATAATAAACCATT 2171953 30 100.0 37 .............................. ATTACAACTCCTAAATTATTAAATCCATCAGTAAGTA 2171886 30 100.0 36 .............................. ATGGTTAAACGATGAAGCAAAACGTAGAAACATAAA 2171820 30 100.0 36 .............................. ATCGGAACAGCTACAGATGCAAGTGAACGATTTGAC 2171754 30 100.0 36 .............................. TCAAAAACGTAAATATTATATATATTCATATCTATT 2171688 30 100.0 36 .............................. TCAACTCTCATCTTGTCGATCGGAACACCTGCTTTA 2171622 30 100.0 36 .............................. TGTTCAATCCTTTCTATAAATGTTTTATAATCATTA 2171556 30 100.0 36 .............................. GGTTCTGCTTTTAATACATTAGCTAATGCTATTCTT 2171490 30 100.0 35 .............................. TTTTAACACCTCAATTAAATCATTAAAATCTTTTT 2171425 30 100.0 37 .............................. GCCACCTGTTGCCATTGGTAGCCATTTATATACTTTT 2171358 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ====================================== ================== 53 30 99.7 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : CTTATCCTCTTGCCAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTCGTAATCAAAGGTGGTAAAGAAAACGCTGTTAAATTTATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGCACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTTGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGACTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTATTTTTCCAGCCATTTTCTAGTTTAAAACCTGAAATCCTTATAAATAAAGGATTTATAAAAAATCACCCAAAATCCTCAATCGCTGGTAAAAACTCATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTGTTAATTTTACTGGC # Right flank : AGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAGTCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGATTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //