Array 1 1461836-1456091 **** Predicted by CRISPRDetect 2.4 *** >NC_008618.1 Bifidobacterium adolescentis ATCC 15703, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1461835 33 100.0 34 ................................. ATGAAGCCACCCCCTCGGCTTGGGGAGCGTCCAG 1461768 33 100.0 36 ................................. CTCACGAGATCGCGCAACGTCTCGATGATTTGGAAG 1461699 33 100.0 37 ................................. AAAAAGGAAAATCTGTATTGGGGCAGCACCGTACAGG 1461629 33 100.0 35 ................................. GGTACAAACGGTTACATCCCTTAGTTATCCGATAG 1461561 33 100.0 35 ................................. GCTTTCGTATTGGCGACATCGTTGGCTGTGCGGTG 1461493 33 100.0 34 ................................. TACAAGGTGCATCTTGATGCGGCACCAACCGACG 1461426 33 100.0 35 ................................. TCCATAAGTGACGTCAGCCGAATCATGCCAGTCCG 1461358 33 100.0 33 ................................. CGAGACTCCATGGGACGATGGGCGGAGTACATG 1461292 33 100.0 35 ................................. CCCATTGGTCGCGGAGCCATGTGTTGAGCCGTGGG 1461224 33 100.0 34 ................................. TATGACACCTTGGAAGTCTCTCAGACGCTTTTGG 1461157 33 100.0 36 ................................. CTACCATACGCGCACATGCAATTCGAACCAGTCAAG 1461088 33 100.0 34 ................................. ACCTTGGACGAGGCGTTTAGCCTGACCGAAGAGG 1461021 33 100.0 35 ................................. TCGAGGTTGGTCAGGTCGGTGAGCCGGTCGGCGAG 1460953 33 100.0 34 ................................. CCGTACCTCGGCCGCCGTATACCAGCCGTCCGTG 1460886 33 100.0 34 ................................. TCTCCCTTGATGGCGTTGATGAATGTGGCGTGTG 1460819 33 100.0 35 ................................. TTGCAATGGCGACGACCACGTCGCGTACGAGGCCG 1460751 33 100.0 34 ................................. ACCGTCATGAAGGTTGGAAAATTGGTGATACCAG 1460684 33 100.0 34 ................................. CAGGTCACTCAGGTTGAGCGGGAGGCTGTAGTTG 1460617 33 100.0 34 ................................. GAGTTCAACGATGCGCGACTGCTGCGCGGCGATG 1460550 33 100.0 34 ................................. CGCGACGAGGTCGGCGTGATGGTCGGACGTGGCG 1460483 33 100.0 34 ................................. AGCCTGATTACGAGCGTTACCCGCAGGAGCGTCG 1460416 33 100.0 34 ................................. CTACTGCGCGTCATGTCAGTCAGCCTCCCCAAGA 1460349 33 97.0 34 ..............A.................. TCCTTATCTTGGAACGTATTCCTGCTGGAAGTTG 1460282 33 97.0 34 ..............A.................. TCCTTATCTTGGAACGTATTCCTGCTGGAAGTTG 1460215 33 100.0 33 ................................. GAGATGAAGGATGGCGTTGAATCATGGCGGATG 1460149 33 100.0 34 ................................. TACCATGTCCCGTCATTTTTACGCTGTTTATTGG 1460082 33 100.0 32 ................................. GTCTCGCAAATGGCGCGATAGCCACGCGCCTG 1460017 33 100.0 33 ................................. AATCCGGAATGCACCAGCAATTACTTCCAGGTG 1459951 33 100.0 34 ................................. CTAACCGTTGGGGACAAGCCGTTTTTGAATGCGC 1459884 33 100.0 34 ................................. TCGGCAATCGCAAATATTGCGGCGTAGAGGGAGA 1459817 33 100.0 35 ................................. ACATAAGTACCGCCGATACGGTTCACCAGCGCCGC 1459749 33 100.0 35 ................................. ACATAAGTACCGCCGATACGGTTCACCAGCGCCGC 1459681 33 100.0 34 ................................. CGCCATTGAGCTTTCAGATTCACTTTCTGGCAGA 1459614 33 100.0 34 ................................. ATCTCCCGCCGCCACCACAACCTCATGCGCCACC 1459547 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 1459480 33 100.0 34 ................................. TCTCGCAGCACCAGCATCTTGACTTTGCGTATTT 1459413 33 100.0 34 ................................. CGTCTGTTGACGAAGTTTTTCTTGCGCTTGCATG 1459346 33 97.0 34 ......T.......................... TTATACCGGTGCAGGTACGTCGTGCAGACATCCA 1459279 33 100.0 34 ................................. GTCTTCACGCCCGAGGTGATCGCATCGTGGAAGG 1459212 33 100.0 35 ................................. TCCGACACTCGCCTCTACAATTCCCGCGAGGAACG 1459144 33 100.0 36 ................................. TTGCCGGCTCCGAGCAGCGCTTCGGCCACTTGGTTG 1459075 33 100.0 36 ................................. GGCTTCGTCTACGACCTCTTCCCAGAAGAGGCGCAC 1459006 33 100.0 34 ................................. AGGGTCAGCAGCGACCCGTTGCGCTCGGTGTGGC 1458939 33 100.0 34 ................................. AATGGGGTTCTCTCCGATCCAGCCGTGCTCCAAA 1458872 33 100.0 33 ................................. AACGTGTCCGGCATTCCGACGTTCGCGCAGCAG 1458806 33 97.0 36 ............................A.... GCCAATGGAGCGCATGGCGGCCGGTGGTGTCTGCCG 1458737 33 100.0 32 ................................. GTCGATGTACGAGGTGCGTTCTTCATATTCGA 1458672 33 100.0 33 ................................. TTGCTGGCATCCGCCTCTTCCCAGTTCGTGCTA 1458606 33 100.0 35 ................................. ATTCAGCGCGTTGAATACGTCAACGCTCATTGCAC 1458538 33 100.0 34 ................................. TATATCCCCAACTACAATGAGGCAGGGGCGGACA 1458471 33 100.0 34 ................................. ATCAAGCCTGAGCCACGCCATAAGCATCAAGCGA 1458404 33 100.0 34 ................................. ATGGATGAAGAGGAAGAATCCCAGCACATGCGAA 1458337 33 100.0 32 ................................. TATGACACTCTGGAAATCTCTCAGACACTCTT 1458272 33 100.0 33 ................................. CTCTTGACTTTTGGCGTTCCAATAGAACGCGGG 1458206 33 100.0 35 ................................. TCGTACGCGGTTATGGCGCTTTCCCGCGCCTGTAT 1458138 33 100.0 35 ................................. GTCAAGACCGCAGCGCAGGATACCGTCGTTGTCAA 1458070 33 100.0 33 ................................. CAGAACGGAGCCATTCCCTGCCAGTCGGCATGC 1458004 33 100.0 33 ................................. ATGCAGTTGGTGTCCGACATGGTCGGCGGCCTG 1457938 33 100.0 34 ................................. CATGACGGTGCGGTTGGTGCCGTCCTGTGCCTGG 1457871 33 100.0 34 ................................. ATCGAAGGCACCGAAGCGGGCCATAATACTCTGC 1457804 33 100.0 35 ................................. GCCGAGCATGGCGACATGATTCGCCCGCAATACGC 1457736 33 100.0 37 ................................. TGCTTATTGCGTCATGTGCGGCTGCATTTCCCGAAAC 1457666 33 100.0 33 ................................. AGCGCCGACCTGACCAAGGCGCAGCTGAACCCG 1457600 33 100.0 34 ................................. CGGTGAAGTTCGCCACGGCATGATGATCGATGAC 1457533 33 100.0 34 ................................. TCCTTTAATGGTGGGTGGGCAGTCTTAGTCGCGT 1457466 33 100.0 33 ................................. GTGCTTCCCGGCCACACTCCCCCGGAACCCGAA 1457400 33 100.0 34 ................................. CGCTTCGGACTGTTCCATCGTCAATGGACGCCAG 1457333 33 97.0 34 ............G.................... ATCGTGAGTTTCCCGCGACTCCACGCTCTCAATG 1457266 33 100.0 34 ................................. TCCAAGCCTGCCGCATATCCGAATGACGGTGGCC 1457199 33 97.0 34 ...................A............. TCCGACCTGGCCGCGGACGATCAGGGAGGATACG 1457132 33 100.0 34 ................................. TTGCGCCATAGCTGACGAAAAGCTGCTTCCACGC 1457065 33 100.0 35 ................................. CACGGTCGAGTCGCCCACGTCCATCACGCCCAGGC 1456997 33 100.0 34 ................................. GGTTTGACCGGCTACGCGATTCGCGTCACGGGCA 1456930 33 100.0 35 ................................. CTGCCGCAGCGTGACGAGCTGGTCACGCAGGATAT 1456862 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 1456795 33 100.0 33 ................................. CACAAGTCTCGCCTATAACTTAGGACACTAGAG 1456729 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 1456662 33 100.0 35 ................................. AATAATAGTTTCGCCATTTGCCGACGCTCTCCGGT 1456594 33 97.0 34 ...................T............. GGGTTGACGTACGTGGCGGTGCCCGTCACGGTAA 1456527 33 97.0 33 ...A............................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 1456461 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 1456394 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 1456326 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 1456258 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 1456190 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 1456123 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ===================================== ================== 86 33 99.6 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACGG # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //