Array 1 24015-22528 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJV01000021.1 Ruminococcus sp. AM27-16 AM27-16.Scaf21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 24014 32 100.0 35 ................................ TTTTCCTGATCTTCTGTGATTGTCGCATGGAAAAT 23947 32 100.0 35 ................................ ACGATATGTAATGCGTTCCTGGGAGCCATTACGCC 23880 32 100.0 33 ................................ AAAGTAGTTCTTAGCTTCCGCTACGGTATCGCC 23815 32 100.0 34 ................................ CTTAGCACCAGATGCATCTGTGGTTGCATCAGTG 23749 32 100.0 33 ................................ ATCATATTTCAGAATAAGATTGCGGACATCTGT 23684 32 100.0 33 ................................ GTGTTTATTGTTTGCAAAAATAATATGCTGAAT 23619 32 100.0 33 ................................ AAAATGCTATGTGTGCCTTATCAACGAGATTTT 23554 32 100.0 33 ................................ TGCTGTAAGGGTTGCGCTTGCTGCTACACCTCC 23489 32 100.0 37 ................................ CCAGACAGTAGAAGAACTGACGGAATGTCGTAGTTCT 23420 32 100.0 35 ................................ TCAGAATGTACATGGATGGGGATTATGTGCAGGCG 23353 32 100.0 35 ................................ CATTTAACCAGGCAGCAAGTGCTTCCCTGTCCTTA 23286 32 100.0 35 ................................ AGCTGCAAGAGCTGCTTTCTTTTCTTTTCGTTTTG 23219 32 100.0 33 ................................ TACAGGTCTGCGCTTATCATCGTCTGCTTCTCC 23154 32 100.0 36 ................................ ATCCAAGAGTTCTGGATGATCCTCCCACGCTTTTGC 23086 32 100.0 33 ................................ CAGAGAACAGAATTTGATGTACCATCAATGAAA 23021 32 100.0 33 ................................ CCACATAGTTCCGAATAGGTTTACTCCAGCTGT 22956 32 100.0 34 ................................ AAAAAGTTCTGTATTAATATGCTGATGGAGCTTC 22890 32 100.0 34 ................................ AATTCCGATAATCACATAAGCGTAATCATTTGCC 22824 32 100.0 35 ................................ AACTTTGCGTTGTCCAGACGGTATCCTGCACCTTT 22757 32 100.0 34 ................................ ACGAGGCTTCTGGCCGTATCAACAGAAAAGAACT 22691 32 100.0 34 ................................ TAGGATCATCTGACAGCGTTCTCTCCGGCAGATT 22625 32 100.0 34 ................................ TATTGTAAGCCTTTACGGTATAGGTGTATTTTTA 22559 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 99.9 34 GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Left flank : AAAAGATGCTTGTTTTGATAACCTATGATGTGAATACAGAAACGGCAGCCGGAAAAGCAAGATTACGGAAAGTAGCTAAACAATGTGTTAATTATGGAAGACGTGTCCAGAATTCAGTTTTTGAATGCATCTTGGATAGTGCACAATGCGTTACCCTTAAGGCTGCTTTGGCGAATATTATTGATGAAAAGACAGATAGTTTAAGATTTTATTATCTGGGAAATAATTATAAATCTAAAATAGAGCACATGGGAATAGAAAGAGGAATATCAGCAGATGATATGCTGATATTATGATGAAAAAAGCTTGTGAAGTTAATTAGGAGATGTGCGAATGATAAGAACACATAAATTTCCTAGAAGACTCGCACTAGAAAAAAATAATTGTTATCTGATAAATGGTAGCATATAATTATTTGTGTCAGTAATTACAGGTGATTTTGAAATATTGCTTTGGCTAATAATAACAAAATTCAAATGTGATTATTAGCAAAAATTGCT # Right flank : TTGAGGAGATGATAAATTGTTTCAAAATTATGGGACGTCTATGGAGATGTTATTTAAAGGGATTTTGATGCTTGCAGCCTGTTCGGGGTGTTATCTGGTTTGGTGGGGTGTGGCTTTTTATCCGGAGAGACATGTTCCGTTGTGGCTGTCGGGAATTTTGCTGGTGGCGACGGCGGCTTGTGGGATTATGGCGGTAAACTGGATGGCGCAGGGCATTTTTCAGGCAGAGAAGGTGCGTGCAGGAATTCCTGGTGGATGGATTCTGGCTGGTGGTGTGATTGGTTATGTTGTTTTGTTGGTAATCAGTAATATTATTTTTCATCGTATGGTGACGACGGAGTTGTTTCTGATTATCGGATGGGCGGTTTTGAATCTAGTCACAGTTGATACGCTGTATGCCAGTGGATTATTTTCAGCTGGAGTTTCTGTTGCATTTGTGGTGTTGACCTTAGTTGTGGTTGTGGCGAGTTTGTATTGTTATATGATTTATTATGAGCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA // Array 1 7266-8754 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUJV01000046.1 Ruminococcus sp. AM27-16 AM27-16.Scaf46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7266 36 100.0 31 .................................... CTCAATCCTTTGCTTACCTCCTTAAAGGTGG 7333 36 100.0 30 .................................... GGAGACGGATTCGAACCGCCATTCCAGGCT 7399 36 100.0 30 .................................... GATAGCTTTTCCCGGAATATTTCATTTTCT 7465 36 100.0 30 .................................... GGATTTTACCCAGATTTTCATATGCATTCA 7531 36 100.0 30 .................................... TGCAGCTTCTTGCAGGCTGTCTCCCACTCC 7597 36 100.0 30 .................................... CTTGCGTCTCCAGTCGTTTCCCTGTCTCCT 7663 36 100.0 30 .................................... TACAGCGAACTGCATGAACGACTGCAATAC 7729 36 100.0 30 .................................... ATAACGGAATGATGAGCCATGAAGAGAGCG 7795 36 100.0 30 .................................... AGATCAACGGATTGCATAACGTGTATTACT 7861 36 100.0 30 .................................... AATGGAATTTGACATTCTGACTCAGAAGAT 7927 36 100.0 30 .................................... TGAATCTTAGAAAAGCTACACTAACCGACT 7993 36 100.0 30 .................................... CTGTCCGTACGTGTCGAAAGCGTCCTCACA 8059 36 100.0 30 .................................... AAAGGTAAGATGAAACAGTATATCATCATT 8125 36 100.0 30 .................................... ATTGCAAAAGCAGCGTACGGCATGGCAGAG 8191 36 100.0 30 .................................... TGATTTCATCAAATGGGAAGATGAAGAACC 8257 36 97.2 30 ...................................T TTGCAAAAGAAATTATAGATGTTGCGTGTA 8323 36 97.2 30 ..........T......................... TCCGGAATACTCATACATTACAAGCTGAAA 8389 36 100.0 30 .................................... CTCACCCGTGAAGAAGCTGAGAAGAAGTTG 8455 36 100.0 30 .................................... ACCTTTTCCACCAATTCTTATACTATCGTC 8521 36 100.0 30 .................................... ATATAAAAGAAAGTGATTTGTCCCGTTATG 8587 36 100.0 30 .................................... TGTCTCCCTGTGCTCTCGCTCTTGTGCTAT 8653 36 100.0 30 .................................... GTGTGAAATATGGAGATAACAGCGGATGGA 8719 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.8 30 GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGCTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAATCTGACTGAAAAGTTTATAGACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATTTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACAAAGATGTATCTGATCAATCTGGAAGGAGTAAAATCAGACTCCATCGAAAATGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTTTTAACAACCTTCTATCGCAAGAAGATAACGACTCGGTGAGAACCGGATTTGAG # Right flank : CCAGATGAAGGCCTTGGTACAATTGGAAAGAATCACATTCAGAGCAGTTCTAATTCTTCTTCTCAGAACTGCTCTTTTTCTCTGCTCTGAATGTGATACTTTCCTAATGAATTATATCATGAGCGAAGATGGCAGTGTTGTTGGCCCTTACGGTGAGAATGAATCAAAACTGTTTCGAAATGTAACTGCAGCTGATGTAGGAATTACGGAGAATAAGGGAACTGTAAAATATTACGGTACAAATAATCAGGAATATATCGTAACCTATTCCAAAAGCATGGTGACGGGATGGTATACACTTGCTATGATTCCGGTTAATGTTTTCAGTAAGAATATTGCTACAGATCTTACCAGGGCAATATTGATTCTGGTAACTATAGAAATTATTTTATCTGTAACTGCGGCTGTTCTTATTTCCAGAAAGATCGGGAAAAAAGTTTACAAACCGCTGCACATGATAGAGAAAACAGGCGAGGGTAATTTTAATGCAAGAATTGTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //