Array 1 48740-49542 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV823425.1 Corynebacterium sp. HMSC04H06 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48740 29 100.0 21 ............................. ANNNNNNNNNNNNNNNNNNNN Deletion [48790] 48790 29 100.0 32 ............................. CATTGATTGACCTAATCATAATGATTAATCCA 48851 29 96.6 32 ............................T CCAAATCCCAGCGATACCTCGAACTCGGAGAA 48912 29 100.0 32 ............................. CGGTAGCCCTTGGCCTTGAGCAGGGCAACCAT 48973 29 100.0 32 ............................. GCCCACTCATGGCACTCACCGACGCTGAGCAG 49034 29 96.6 32 ............................C ACCGGGATGCGCCGGGGCGCAAGGCATGTGTC 49095 29 100.0 22 ............................. NNNNNNNNNNNNNNNNNNNNGC Deletion [49146] 49146 29 96.6 32 ............................C TGCCTTATCGCCAGTGCGCTCATCGAATGCGA 49207 29 96.6 33 ............................C TCCCCCTGCTCACCCCATAAACGACGCTGCAGC 49269 29 100.0 32 ............................. ATGAAGGCCAGTGGGTAGGCCTGCTGGATGAG 49330 29 96.6 33 ............................C CAGACGTGTACCAGATACCCGCCCCCGGTCAGC 49392 29 100.0 32 ............................. ATGGTGGAGCTCCAGCAGGCAGCAAGCCAGGT 49453 29 93.1 32 ...............A............C CTCTGGCCAGCGTAAACAACCGATACTTTCGG 49514 29 79.3 0 T......T.....G..T.........A.T | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.8 31 GTGTTCCCCGCGCAAGCGGGGATGAGCCG # Left flank : CCTTTGCAATAGAAGTAAAGGGCGCGCAAGCATGTTTCATCCTAGCGTGCCTAGTAAAACCTGGGGTGGGACTCGGGAGGTATGTTACACGTGTGGCAGTAAGCTTGCTGGGGAAGATGTAAAACCTTATTCAAAAATTAAGTTAGGATTACTTTTTGGGGGTGCATCGAATGAGAGGATAAGCGGGTCTATGGGAAATAGGTGCTCGGGTATGAGCGTCTCTCTTGTATGGTTGATGAAGATTTTAATGCTCGACTGAGTCCTCTTGGGGCCGCATACGTTCCGGAAAATTTCCGGCTAAAAGGCAATGTGAACAATTTTCAGAATTACCTCAATTAGCCCGACAAGTTGTGATGGGAAAGCCAGTGCAAGAGTGAGGGGTGTAGGCATAGTAGGGATCTGTTGCGCATGCCGAAGTGTTGCGGGGGTGCTCAGCCTCTAGGCATGTGAAGTCGTATGTACTATAGATAGTCGGCTCGAGTTTTCGCTGCTCGCGAAGT # Right flank : TCTTTGCCGCGTCTGGAATTACTTGGGCCATTGGAATTGTTTGTTCATTCTACAGGGATGCTAAGTGATATGATCCGTCTGTAAACTGACGGTTCGAATGGGAGGGGTGGGCGAGAACGCCCCCGTAAAGAAATGAGCAGTGGATTAACTCCCGAGACTGTGATGGCATTGGTCTCGGCTGGTGTTAGCCAGGTAGATATCGCTAAGCGATTTGGTGTGACGCGTCAATACGTGAATAAGTTAGCTAAAAAGGCTGGGCATGTATCGGCAATGACAATTATCAACGACAACCTCCCGTGGAAGGTTGGTGGTGCGTATCAGGATAATACTATCTATCAGGGTATCCGCCTGATAGCTCACTATAATCTGGAGGGGGAACGGGCGTTTGAGGGGAGGCCTACCAACCTTCGTAAATTGAAAGCTATCATGCGAAAGTTGCACGTTTTCCAGCAGGTTGTGGATTTTGATCCTGAATATCCAGCAGTACCGGGTGTCGTGAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //