Array 1 1125534-1125145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059570.1 Neisseria dentiae strain DSM 19151 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1125533 36 100.0 35 .................................... GTTACGAATAGTCAGTAATTGTTCAACTTGCTGCA 1125462 36 100.0 35 .................................... GTTCTGCCTGCAAAGACAATTCTTCGAGAATTTCT 1125391 36 100.0 36 .................................... CCTTTGGCCACTTCCAGCATATCGTTGACGGTCTGT 1125319 36 100.0 33 .................................... CTTTTTTGCCTTTGTTTTTACTGCGCTTTTTTC 1125250 36 100.0 34 .................................... CTGATGTAGTTCGGTCGGGTGAGCAGCGCCCATT 1125180 36 88.9 0 T................................GTT | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 35 GGACACAAAAAAGCCCCATCAACACGGGGATTGAGA # Left flank : TGCCCAAGAGCTATCCCGAAGCCTGCACCCTGCATATCCGCACCCCGCTCAGGCTGCAAAGCCAAGGCAGCGTGCTGGGCATCCACCGCATACAGGCAGGCATACTGCTGCGCCAACTGATGCGCCGCACCTCGGCTATCGCCACCCGCCATTGGGAAGCCCCCATCGAAGCCGATTTCGGCAAACTGGCCGCCGCCGCCGACCGCATACCCAACCATGCCAAGCTGCAATGGCAGGATTGGACGCGCTATTCCAACCGCCAGCAGCAGAAAATGACCTTGGGCGGCATTACCGGCACTTGGCGGTTCGACCATTTGCCTTTATCATTTGCCCAATTGCTGCATATCGGCCAATGGCTGCATATCGGCAAAGAAACCGTATTCGGCTTAGGCCGTTACACGTTGGCAGAGGTTAAATAATGATTAGCTTTGTAAAGAAGAGATTTGTTGGAAAACCCCTTTTCAACCGATTGATTTTGAAAGTGAAAGTTGCTGTCTGCT # Right flank : TTTCAAACAGGTGTTACTGTGTGTCTGAAATCTTTGCAAACATACTTTAAGGCCGAGACCTTTGCAAAATTCAAATTGCTATCTAAAAAATCTGAACTCCGTCATTCCCGCGTAGGCGGGAATCCAGACGCTTGGCATCTAAGTATTTGTTTAATCAATGCTTCAATATTTCCATCTGGATTCCCGCCTACGCGGGAATGACGGGATTTAAGCATTTCAGACGGCCTTAAGGTATTTTTGCAAAGGTCTCAGGCCGTCTGAAATGCTCCTTCGTTTGCCCGGGCTTGAGCCGGGCATCTTGTTGCTTTGAAAGAAATAGAGCTACCCGGGTCAAGCCCGGGTATGATGATGGCCGGGGGTGTTTCAGACGGCCTTCGGGTGTTTTGCATAGGTTTCAAGCTGATTAACGATGGCTTAAAATTCAAGGGGAATCGAAGATGGCGAAAAGGCATCTTTATCTGTTTGCCTACGATATTGCCGACATCCGCACGCAAAACCGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACACAAAAAAGCCCCATCAACACGGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 2468199-2469686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059570.1 Neisseria dentiae strain DSM 19151 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2468199 36 91.7 30 .CC.....C........................... GCAAGGACACAGCTGCCTTGCATAGCAGGT 2468265 36 100.0 30 .................................... CGAGGGCAAGGGCAATCTGCCGCTGAGTAA 2468331 36 100.0 30 .................................... AACAAGGGCTGGCTGCACCCCAACGGCCAC 2468397 36 100.0 30 .................................... CTGCCACTCGGCCAAATCGTTGCGTTGGCC 2468463 36 100.0 30 .................................... TTTTATCCACGTTGTAAATATCAAGCTGGC 2468529 36 100.0 30 .................................... GACGGCAGCAGTTGCCATCTGGCGTATGGT 2468595 36 100.0 30 .................................... TCCTTTCATTGGTTTGCGGCTGCGTCCAGC 2468661 36 100.0 30 .................................... GTTTTGTTCGGCGGCTCGCAAGCGTTTCAA 2468727 36 100.0 30 .................................... TCGTATAGTGCCAATACGCGCTTCAATCTG 2468793 36 100.0 30 .................................... TACTACTACTACCGCTACTACTACTACTAC 2468859 36 100.0 30 .................................... TTTTTTGGTTTCCATGCTGATGCCTTTCGG 2468925 36 100.0 30 .................................... CATCTTTTTCCGGGTGGCTGATGGTTATCA 2468991 36 100.0 30 .................................... CCAGAATTTTCAGGGTGGCGCCGGTCATGC 2469057 36 100.0 30 .................................... CTGCGTGATATGCCATTGCGCTCGATTACG 2469123 36 100.0 30 .................................... CGATATGTTTACCGACCCCGCAGACGTGGA 2469189 36 100.0 30 .................................... TACCTGCTTTCAACCCAGCCTTTATCGGTC 2469255 36 100.0 30 .................................... CAGATGACGCTATGATATGCGGCGTGGTGA 2469321 36 100.0 30 .................................... TTCGGGTTCGGGCGTTACGGTGTAATAGGC 2469387 36 100.0 30 .................................... TTTGCGTATTTTTCAGGCTGTTTCGTGCGA 2469453 36 100.0 30 .................................... CCGCCGATACGGTAGATAACTTAACCGCTA 2469519 36 100.0 30 .................................... TATTACCGCTACTCCTGCTACTGCTGCTAC 2469585 36 100.0 30 .................................... GCCGTTTTTAACGTAGTCTTTGCACATTTC 2469651 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : GCCGGCGGGCGGGCGCTGGGCAGCGCCGAACAGTTCAATGCCCTCCTTATGCCGTTGGCCGATATTTTCGGCGCTGCTATCGGTGCATCCCGCGCCGCCGTCGATGCCGAATATGCCCCGAACGACGCCCAAGTGGGCCAAACCGGCAAAGTGGTCGCCCCGCAACTCTATTTTGCCATCGGTATTTCCGGCGCCATCCAGCACACCGCCGGCATGCAGGACAGCAAAGTAATCGTAGCGATAAACAAAGACCCGGATGCTCCTATTTTCAGCGTGTCCGATTACGGTATTGTCGGCGACCTGTTCGACATCGTGCCGCAATTAACCACAGCCCTAAAAAGTTGAACGTTTCACGTGAAACAATATATTCCAGATGTTATTGTAAAAGCCGAGCATCAGTTGTTAATAGATGCTCGGCTTTTATTGAAATCAAGTTGGTATACAAAATTTTCATCTGGTAGTGCTGCAACTATGAGTTTCAGATGGCGCAACAGCGACTG # Right flank : TACTCAAGCCTGAAATCCTTATTTGATAAGGATTTCAGGCTTTTTTATCGTTTTTAAAACCACGCTAAAATAGTAATAATTGGTCGGCATTGACCTTTTTTTCACGGGGTTTGGGCTCGCCAATCAGCATAATCATGCCTGCAAATTGCTTTTCAGTTACCTCTAAATAGCGTACTTGGCCTTCTTCGGGTAGGTGTGCTTTCAATCGATTGTGGTGTTTCTGCAACGCATCACGGCCGCGTACGATGCGGGAGTAAACGGATAATTGCAGCATTTGATAACCGTCTTTTTGCAGAAATTGACGGAATTGGTTGGCGGCTTTGCGTTTTTCCGCAGTGGTTACAGGTAGGTCGAAAAATACGATTAAGCGCATAAATTTGGCCTCACTCATAATCTTGTACCTTTAAAGGAAGCATCTCGGGGAGTTTCAAGTTTTTTGAGTTGCCGGTTAGGGCTGCCTGAAAAGATTGAACGGTACGATCGATTGCTGCCAAGAGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //