Array 1 43028-44223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSJ010000040.1 Bacteroides faecis strain D40t1_170626_F2 NODE_40_length_50207_cov_20.2463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 43028 47 100.0 30 ............................................... TTGAGCTTAGATTGAAAGAAGCCGAAATAA 43105 47 100.0 30 ............................................... CGAACACTTTAAAGGAAAGGAGGAAATATG 43182 47 100.0 30 ............................................... GTCTTTCATTTTATCGCCCCCTATCATCTT 43259 47 100.0 30 ............................................... CTCTTGCTCTTCGACAGGCTGAAGCCTTAC 43336 47 100.0 29 ............................................... AAGAACAAATATAGCCGCATCAGCATTGT 43412 47 100.0 30 ............................................... TTTAGCAGCAATAGCTTCTCATATGGCTTA 43489 47 100.0 30 ............................................... TCCTGTTTTATTAAAAGCATCCCTATTCTC 43566 47 100.0 29 ............................................... GATACAACCGGGCGTAATCTCGATATCAT 43642 47 100.0 29 ............................................... GGAGGTGATGGAATGCAACCATCCGGACC 43718 47 100.0 30 ............................................... TATTATGGCTATACGCTGAAGATAAAGGCA 43795 47 100.0 29 ............................................... ATATCAATATGGACAACAAGCGGCCGACA 43871 47 100.0 30 ............................................... ATTATATAGTTGGTTAAATAGTAAAGTTTA 43948 47 100.0 30 ............................................... TGAAACATTGAAGGAGAAGGTTCTTACTCA 44025 47 100.0 29 ............................................... ACAGGAATTGGTATGAAGATGAGCGATAT 44101 47 100.0 29 ............................................... TACCACTACTTTTATACCTTGACATTTTT 44177 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : AAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCTGATTCCGTATTTCTCGCACGCTTTCGCTA # Right flank : CAGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAGGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 53547-57202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSJ010000035.1 Bacteroides faecis strain D40t1_170626_F2 NODE_35_length_57583_cov_27.6366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53547 32 100.0 34 ................................ CTGGCAGCAACACCGTAGCTGCTACATCCAGCCA 53613 32 100.0 34 ................................ TCCCTCATACCCACGAATAGTCAGCACGCCGAAT 53679 32 100.0 34 ................................ AATTGAATCATTTCAACCGAATTGATTATCTTCT 53745 32 100.0 34 ................................ ATGGCTATATCCCATTTATCTGTGCGCACGTTAC 53811 32 100.0 32 ................................ AAAATCAGAAAAAAAGACGCAGAAACAGATGA 53875 32 100.0 34 ................................ TTAACGGAAAAACGAATTTAGGACAAGAGAAGAT 53941 32 100.0 35 ................................ AGGTACTTAATCCGGAATTTGCAGAACGCCAGCGT 54008 32 100.0 36 ................................ TGGATTGAGTTAATTTCATTGCTAACCGTTTACTTG 54076 32 100.0 35 ................................ ATTTATCATATTCCCAACACCCGTGAGTAGCCATG 54143 32 100.0 36 ................................ TTTCGCTTCCCTTGTAGTAGGTGATAGAAACTGGAG 54211 32 100.0 33 ................................ TTTGTTCCAAATAAAACCGCAATCTCTTAAATC 54276 32 100.0 33 ................................ AAGAAGAAAATCATGAGTTGGATCAAAGAAAGT 54341 32 100.0 34 ................................ CCAACCGATGTTATTTAGTTGAATGTTGTGACCA 54407 32 100.0 34 ................................ CACGTGGAACGATAAAAACAAAAAAAATATGAAA 54473 32 100.0 35 ................................ TACTACGAGATGATCACAAGAAGAATGTCCGCAGA 54540 32 100.0 35 ................................ TGTTTCTCCATTGCACCCAATAGAGACAACAGATA 54607 32 100.0 34 ................................ ACTAGCCTCCTCAAGAAGAATACGCTTATAGTTA 54673 32 100.0 34 ................................ CGGTATTAGTTATAATAAACACAGTATCGGTATC 54739 32 100.0 34 ................................ TTTTGATAACGGTTCGGAAATGTCTGCTCCCAAG 54805 32 100.0 33 ................................ CATAATGTTTCTATTTAATGTGTTGATACTATC 54870 32 100.0 33 ................................ CTCATAAGAAGTTTAATATATGGTATCCGTAGT 54935 32 100.0 34 ................................ TACTGTAGCCTTATGATAATTGTCCACATTAAGG 55001 32 100.0 35 ................................ CCTTTAGTAGCGTTATTGCTATTAGCGGCCTGTAG 55068 32 100.0 32 ................................ CCTTTAGTAGCGTTATTGCTATTAGCGGCCTG 55132 32 100.0 33 ................................ TTTAAGGTTAATCCTAATACTCTCGATAATATC 55197 32 100.0 33 ................................ TTAACACGAATCTTGCTGATGACGCTTCTGAGG 55262 32 100.0 33 ................................ CTTTATACTTAGGTTATGCGCCTCGTTATATTG 55327 32 100.0 34 ................................ TTTAAATACTGACAAGCAGCAACTTGAGAATATG 55393 32 100.0 34 ................................ AATGCCGCTGAAGCTCAAAAGTCTCGTGATTATA 55459 32 100.0 35 ................................ TTAACGTTTTATAGCGCGAGCGACAAAAGCAGGGT 55526 32 100.0 34 ................................ TTGAGAAGTAAGCGCGAAGAATGTAAAAATTTAT 55592 32 100.0 33 ................................ TATATGCTAAAAGGGTCAGGAAATATAATCTTA 55657 32 100.0 34 ................................ ATCGTTCTGGTTTTGACATCTCACAGAAAAACCT 55723 32 100.0 32 ................................ TGTTGATTATTCAGGTATTGCTCAAGGTCTTG 55787 32 100.0 35 ................................ ATCTGTTGCCTCTAATAAAGGTCAGGCAAACGCTG 55854 32 100.0 33 ................................ TAGGAGGAACTATTGGAAATCTCATTAAGAGAC 55919 32 100.0 34 ................................ ACAATCAGATGTATACTATATCTGAGGAAACCTA 55985 32 100.0 33 ................................ CCGATTCAAACTCGCATGAAAGCTCGTATCATG 56050 32 100.0 34 ................................ CTTACCTTAACGGAAACATCACGGGGAACATACT 56116 32 100.0 36 ................................ TTTGGAAATCGTTCGACACTTCTGTAATCCAGATGG 56184 32 100.0 33 ................................ ATCTGATTAATCTTATAGTTCATACTATTAGCA 56249 32 100.0 33 ................................ ACGGTCGTATCAACATACTGTTTTCCCTCGATT 56314 32 100.0 34 ................................ TTGTCTCAACCATGCCTCATATTCACGCAAAAAG 56380 32 100.0 35 ................................ TTCACAGGAACAGTATCACCGGACAGATACGAATA 56447 32 100.0 34 ................................ TTCGCTAAGGTCAAGCGTACATTTCACTTTTGGA 56513 32 100.0 36 ................................ TTCAAGATGCTCATGACGGCGGATACCAACACCGCA 56581 32 100.0 34 ................................ ATAGGAACAAGGTATTTAAAAAACAAATTTAAAA 56647 32 100.0 34 ................................ TTTTCCTCCAGCAACAACGCATTCAGCGCTTCCT 56713 32 100.0 34 ................................ GAGATACTTTCCTGCCGTGTACACTGTTTCCAGC 56779 32 100.0 34 ................................ GTGATTATCTCGTTGTCTTGACTTCCGTCGTTTT 56845 32 100.0 32 ................................ TTACCGGATCAACCCCAGTAGTTATTACAACC 56909 32 100.0 33 ................................ CTTATTGTACGTTGGCAGATTTGCATAATGCTT 56974 32 100.0 33 ................................ TAATCGTTGGTGGAATATGCAAGCTCCTTTGAC 57039 32 100.0 34 ................................ AGATATGCAGATGCCATCGAAAAGACGGCATTCG 57105 32 100.0 34 ................................ ATTCGCAATCTGATAATTTTCATATAGACCCACC 57171 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 56 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : GATAATTATCCAGTGTTCCTAATAAAATGATTTGTAATTATGTACATTCTTATAACTTATGATGTTGATACTACGAGCAAAGAAGGGGCACGTCGTTTGAGGTGTGTGGCTAAAGCCTGTATGGATTATGGACAAAGGGTACAGAATTCAGTCTTTGAGTGTAAGGTGACAGAAGCACAATATTGTCTCTTGAAAGAACGAATCAAAAGTCTTATTGATATGTCTCTTGATAGTATTAGATTTTATGTTCTCAGTAAAAATGAAAATAATAGAGTGGAAGTGGTAGGTGTTGAGACTGCTTATAAAATAAATGATACTCTTATTATATAATGTTTGCGAATATGTAGTGTTACAAAAAAAATAGTAATTTCGCAGGTGTTAAAAATCAGTAGATTAATTTATTTATAGAGCAGTTTTGGGTTGTGAAATCGAAAAAGTAGTAACGATTCGCATAATAATTGATTAAACTTGCTGGCTGATAATATGTTATCCAGCATAGG # Right flank : TTTACCATGATTCCATATCTGCTATTTCTGTTATAATGCTAGTTGACTATTGGGTGGGTAAGATTCCTAATTATTCTTTTACGCTTCTTATGGCAGAGGGAATATACAGTACTTATTCGCATATTTCTTTCATCTCCAATTTTAAGCGGATTATTTGATTTTTGTTATTATTTATAACTAGCTGTTTTTTGTTTGCTATAAAAGTAATTAAAATGATTCAGATTATCAAAGAAGATGTTTTTCAGTATGTATAGTTAAAAGAGTAGTTCTTATAATTTCTCTTCTCTTTATAATTTTCTCCCTCTCTCACCCCCTCAAACTCTTATAGATGAGAATAAATTGAAGCGTAGAGATTGCACCGGTAGTAAATGGTGCACATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //