Array 1 857730-860884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040846.1 Thermococcus indicus strain IOH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 857730 30 100.0 37 .............................. GCAGAAGAACGACTTCTATCACACCAACAACAACGGC 857797 30 100.0 37 .............................. GACGGCAACCCGGAAATGGCAAGGGCTGACGTATGGA 857864 30 100.0 37 .............................. ACTTGAAGGCATTTGGTATCAGGGGCCCTCTTGAGGA 857931 30 100.0 37 .............................. ACATATAGAGTTCTTCTACCTGCCCGCTGGGCACATG 857998 30 100.0 37 .............................. GAAACTGGTGGAGAGGCTGGGGCAACATCTGGATAAT 858065 30 100.0 36 .............................. ACATCGTCGTGTATCCCTACCAAGCACAGGAGCAGG 858131 30 100.0 36 .............................. CTCGATGGATCCGCCGGGAAAAATCGCAGGAATGAG 858197 30 100.0 37 .............................. CTGATTGTCCCTTCATCATATGCCGTAAGATAAGCCA 858264 30 100.0 36 .............................. ATCCAAAATGCTTGATTTTGGTGGCTCTGCGTTCAC 858330 30 100.0 39 .............................. ACGACTCTAATGCCTCGTGAGGTTCTGAAGGAGCACATT 858399 30 100.0 34 .............................. GCCCTCCTCGTCATTCTCATTAGGATAATCACAG 858463 30 100.0 35 .............................. ACAACCTGCCAAGCGCGAGCGACCTCAACATTCAG 858528 30 100.0 37 .............................. GTAGTAATCCTTAGCCCAAAGCTCAATCTCATAATTC 858595 30 100.0 36 .............................. ATAGCTACCTCCCAGATAAAGTCAAGGTTGCTGGGA 858661 30 100.0 36 .............................. ATCAATGCCTTTGTAGCGTACGCACTGACCGACAAC 858727 30 100.0 36 .............................. ATACCTCGCTCTCCTTTTCAGGGGTGTTTGTGAGGG 858793 30 100.0 36 .............................. AAATGATAAAAATCAAACAAAATCCAAAACACTCCT 858859 30 100.0 36 .............................. CTGAAGTCTTTGTCGAGTGTTAATAAGCCGTGGGCG 858925 30 100.0 37 .............................. AGCAATGTTACAATCAAACCTCGTCCTGTCGAGTTAA 858992 30 100.0 38 .............................. GAGGAACTTGATTCTCAGCTCTATTTCTGGTATTTTTA 859060 30 100.0 36 .............................. GCCTGAAGTTGTCGCGCTGTCCATGTTCATAATGAG 859126 30 100.0 37 .............................. CATTATGGTAACGGACGTAAGGGACCATGTAATCACC 859193 30 100.0 36 .............................. GACCTGGTGGTTTTCAGTTTCGCCGCTACAATGTTC 859259 30 100.0 35 .............................. CCATATTCGAAGGGGATAGGGACGTTGTCCTCACG 859324 30 100.0 36 .............................. TACACTGTAATGGTACACCTGCTGGACATCCTCGCG 859390 30 100.0 35 .............................. AAGAAAGTCTCGTTTGAGGGGAGAGTTTGGTTATA 859455 30 100.0 37 .............................. AGAAGAGTGTCCCTATGGAGATATTGGATTATTCCCA 859522 30 100.0 37 .............................. CTCCGCTCCTCGTAGTAGAACGAAGCCAGCACCAATC 859589 30 100.0 36 .............................. AAGTAGATGCTGATAAACTGGGGCTCCGATATGGAT 859655 30 100.0 37 .............................. TCATAGTTTCTCTTATAGTAACTGGCCCGGCCTCTGG 859722 30 100.0 37 .............................. AACGTTGACATATAGCAGGGATGTACTGATGAGCCAC 859789 30 100.0 36 .............................. TTCAACGCGTTCGATAGAAAAGATATGGTTTTCATG 859855 30 100.0 37 .............................. AGGATGGTCTGGATGAACTGCGGGTTGCTGATGGCCT 859922 30 100.0 37 .............................. GTTCTCTACGACGATAAAGAAATCTCCCGCCTTCTCA 859989 30 100.0 35 .............................. ATCGTCATGGATGAAGATTGAGGGGTGAGTGTAAA 860054 30 100.0 36 .............................. TTCATTCACAGGCAGTGCGGAATCCCACCACGTACC 860120 30 100.0 35 .............................. CTAGCGGGAGGAGCAACATGAAGAGGAGCAGGAAA 860185 30 100.0 36 .............................. AATTTGGGGCAGGGCTGTCAATGAGGACTTTGATGA 860251 30 100.0 37 .............................. TGAGACCCTGGAGGTCAAGCAGCTCGAAGACGGCAGG 860318 30 100.0 36 .............................. TTCGAGATCAAGCACGGGCAACACCTCTCCGCTCCT 860384 30 100.0 36 .............................. ATAATCAGGATTCCCCCAAAAACTGGCTCGCCGTGA 860450 30 100.0 37 .............................. GCATCGAAACGTACTCGTAAAACCTGGCGGATGTGGA 860517 30 100.0 38 .............................. CTCATCTTTGTATGCAAGAACCAAGGTAGAGGTGCCGT 860585 30 100.0 37 .............................. GGAGTAAATGCCCCACGGGAGCACGATGTGAGGGTGC 860652 30 100.0 37 .............................. ATGTAAAGATAGCCTTAGGCGCGACCCTCTCCACGGC 860719 30 100.0 37 .............................. ACGCTCCCCTTCTCCCAAAAGGTAAGCCGGCAGTTTA 860786 30 100.0 39 .............................. TCAGAGGTATGACGTAGTATGGCTCAGCGCCCGTGAGGT 860855 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ======================================= ================== 48 30 99.9 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AACCAGGGCTTTTAGGGGTTGCGATTGTGTCGTATCACGTTTAAATACCCAAAATTCACCGAAAATGGGTGTTTTAGGGACCTATCTAAAAACACCGCCCGCTCAGCGTTCGGGAAGTCTTAAATAACCATGTGTTAGAATGTGCCACATTGTTATTTATTCAGCCAACAAATATGACGAAATTTTTTCGGAATGGTCGGATGGGTCAGCAATGCTCCCAAAACTCCCTGCATCCCCATAAAAGAGGACATTCAAGCAGTTAGAGCTGTCTCGCTCTCGATTCCCTGAAATAAGAGCCTAAGAAGGCCCGGGAAATCACTGAGGGACAAAAACGGCAAGGACCAAAACAAAGCCCTCGCCACTATTATGGGCACGTATGGCGCCAGGGATGCCCGGATTGAAGACCCCAACATGCTTCAAGAAAACCCCTCCAAAGAAAGGCTTATAAGAACAAACGGGTTTTATTCCTTTATAGGGCAAAAGAGGGTAAAAGTCGCCCT # Right flank : GAGGAACGTCATGAAGCCCTTGGTTGCGGTCCTGGCGGTTGCACTACCCCCTCTGCGCAAGCTCCATCTCAAAGACCCTATCGAAAACCGCCTTGTGGTTTCCGAAGGCCTCAAACATTCTGCCGGAGTAGTTCTCGGAGGCGGTTTCGAGGAACAGCCGCAGGTTTCTGCTTATCTCGTCGCTCATGGGGACGTGGAGGGGTGAGGGTTCGTAGTAGTTGAACGCCGCGTGAAGGAGGACTATCATGTCGATCTCGACGCCACGCTCCAGGAGCCTCTTCCTGCCGGCGTCCTTTCTGAGGTCCGTTATCCTGTAGCCGCTTCTCGTCTGCTCATCGTAGGGCACCCCAATGCCGTAGATGCCCTCCACCCTTGGGTCATAGACAAGGACCTCGGTTCCGCCGACGATGTAGAGCTTTCCGTCGCGAACCTCAACGACGGTGTTCTCGGTGCTGAGGACCGGCAGACCTTTGGCCATCGCAAGAACCGACATGGTGCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 1203562-1203179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040846.1 Thermococcus indicus strain IOH1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1203561 29 93.1 41 ...............GA............ TCGAACCTAATGGCGTATGAAGTTCTCGGCATGTCTTTCAC 1203491 29 100.0 41 ............................. ATTGATGGACTTCACCGATAATCCCTCCTCTTATACCCCTC 1203421 29 100.0 42 ............................. GTTCTCCTGCCTGAGGAAATCCCTTTGTAGAGGAAAACGTAA 1203350 29 100.0 42 ............................. ACCTCGTAGCCCTGTATCTCAAACTTCCACACCCAGATTTCC 1203279 29 93.1 43 ...............GA............ GTAACCAGCATAGCCATAAATTTCTCACTAACTTCCACGCTCA 1203207 29 79.3 0 ................A....A.A.C.TA | ========== ====== ====== ====== ============================= =========================================== ================== 6 29 94.2 42 GTTTCCGTAGAACAGAGTTGTGTGGAAAC # Left flank : GTACACGAGGGAGAAAGTGAAGTACGGCGGTGCCATGAAGGAGCCTTGGAAGGTCATCGAGAACATACTCTCAAAGACCCTCGGAGGGTAGCACGGGTAGAGCAAAGCCTGGGAAATGGGCAGTCGAGACGCGATACCTTTTCGTTCTTCTTCCGTTTCCATTTTTAATCCCAAGGGCAGGTTTCCGGGAGAATTGAAGCGCTGGAGGGCTCAACTTCTTCACCGTGAAAAGCCGGCAAAAGCTGGGACAAACGCTCCAAAATATGCTCCAGAAATGAAAAACAGAGACCCCAGCCGCGATTAACATCGAGAAGCCAGCTCATCCCGAATATCGTTCAGAGGGGGCGGGGAACGTTCAAAAACCCCAGAAAAGAACGCGAAGCCCGAAAAGTATGAGTGTAGGGGTTATAAATCAACCTCCATGCACCGCTTTCCGAGGAAAGTCTTAAATAGAATCAAAGAGAGAGGGATACATGAGAAACACGGCAATAACACCCAGA # Right flank : GCTGGGGGAAACGGGATGAAAAGACCGCTCTACATAACCCGGCCCGGGACGCTTAGGTGCGTTAAGGGCACGCTCCAGTTTGAGGGGGATGGCGTCCGGAAGACCATCCCGGTGAAAACGCGCGCACCTCTGCGAACGGATTCATGGGATTGAATTCAACCTGGTGTTGCACGGAAGTGGCTGGTTTGTCAACTGCTTCAGTACTCGCTGAGGAGGGGAGTATCACATCGAACGACATGGCCCCGCTGCCCTTAGAATGAATTAAGAACTTTTCAGAAACGGAAAGAAAAGAGCAGGAGAAAGGACGATTTCAACAAACATCTAGTGCGCCATATGGTGGCGCACTTTTCCCTAAAAACCTTCCAGTAGTGGGCGGAAAACAGAGGGTCAACCTCTGTAAACTTTTGACCGAGTTTGTTGAATCAACTTTTTGCATAGGCCTGCAGGAGTTGGCGGTGGTTTGCAGAGGTTTTTGCAGAAGTTTGCACAGGTCTGCATAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGAGTTGTGTGGAAAC # Alternate repeat : GTTTCCGTAGAACAGGATTGTGTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 1214725-1211939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040846.1 Thermococcus indicus strain IOH1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1214724 29 100.0 39 ............................. GCCTCTACAATGCGAGTTAATACAACATCGAACACAATA 1214656 29 100.0 37 ............................. GCATGAACCACACCAACAAACCTACAATCACCAACAG 1214590 29 100.0 38 ............................. GGCGATAGAAGCCGGCAAGCTTAGGGCCGTGCCGGTGA 1214523 29 100.0 39 ............................. GGGACACGGAGGCCCTCCTCGCAGAGTTGGGGCAGTTAA 1214455 29 100.0 37 ............................. GATGACGTCGATGGCAGTGTTAGTAAAGCTCACAAAA 1214389 29 100.0 37 ............................. GCGAAGAGCTTCTGAATTGCTTTTTGTGTTATCTCGA 1214323 29 100.0 38 ............................. GATAGCCTCCCTCGCGGTCCGGAGGCGACGGGCGAGGG 1214256 29 100.0 39 ............................. GGTTATTACCACCACTCCCACTTTTTGGCCTCGATTTCA 1214188 29 100.0 38 ............................. GGTGGTGGAAGTTAGGATTGAGGCTTATGAGAGGGGCG 1214121 29 100.0 38 ............................. GTCATGAGAATAAAACCAGATAATCACAAGAGGGTCAT 1214054 29 100.0 37 ............................. GTCCAGAGCTCGACCCTTAGAACGTCCCTCTCAAGTG 1213988 29 100.0 38 ............................. GTGGCTATGAGTGCGTGCAGTATGTGCTCGCCAGCCGG 1213921 29 100.0 38 ............................. GGAAAATGCCGCCGCTACGACTGCCCCAGAGAACCCGC 1213854 29 100.0 37 ............................. GTTCACAAAAGTCGAGCTCAAGGAGGGAGTTGCAGAT 1213788 29 100.0 38 ............................. GAAGAGATAAAGGGCGTTAAAAGGGCATTTAACACCTT 1213721 29 100.0 38 ............................. GATGCTGTAACTTTTGTTATGGGTTCGTGGGAGTGGTC 1213654 29 100.0 38 ............................. GCAAGTTGTGTAGTGCTTACTAGTTGTCCGTTTTTATA 1213587 29 100.0 39 ............................. ACGAACTTCGTGCAGTCGGCGCAGGACAGCTACATACGG 1213519 29 100.0 38 ............................. ACAAGTGGGGTGGTAGGAACAACGTCCCAAAGGTAAGC 1213452 29 100.0 38 ............................. ACTCTTAATCCTTGAAAGAACACTCTTAAGGGTCTTCA 1213385 29 100.0 38 ............................. ACTCAATCATTCCTGCAAATTCATATACCGTGCAAACA 1213318 29 100.0 38 ............................. ACTTCGAGGCGCACACCTCTAAAGGACTTGCCACCGAC 1213251 29 100.0 40 ............................. AGATAGGAGAGACCGACGCCACGCCAAGGCCCGCATATAA 1213182 29 100.0 38 ............................. AGAACGAAACGATGTACCAGCCCTTTCTCTCCGTGAAG 1213115 29 100.0 38 ............................. ACTCTGGGCAGGGGTCGGGTTCTCTATGGTGTGCGGAA 1213048 29 100.0 38 ............................. ACACCTCCTCTTCAAGCTCATAGATTTCATCATCAAAC 1212981 29 100.0 39 ............................. ACGTAAAATCTGCATGTGAGTGGAACCTGTATCCTCGTT 1212913 29 100.0 39 ............................. ACCTAGACACATACCTCTGACTACGCACCGTAAAACTCA 1212845 29 100.0 39 ............................. ACCAAATCAAACCAAAACCCAAGATAAAGAACGAAAACC 1212777 29 100.0 41 ............................. ACCTGGCTCGGTAACGACCTCAACCCGCTTTACCCGCTCAA 1212707 29 100.0 40 ............................. ACGAACTACCTCGCTACTGGCTCAAAGAGATTCAACAAGC 1212638 29 100.0 38 ............................. ACATCGTCGAATGTCACGTCAATGACGAGGCCCCCTTT 1212571 29 100.0 37 ............................. ACTAATCTCGCTCGTGGGAGTCCTAACACAGAGTAAG 1212505 29 100.0 42 ............................. ACACATTATCTTGCCAGTCTCAGGGTCAATGACTATCCTCGT 1212434 29 100.0 39 ............................. ACGAACTCTATGGATAACGGCCTTATCATTCTCTGTTAA 1212366 29 100.0 37 ............................. ACCCCATTCAGGACTTCTCCGGTCGAGGCGTCGCGGA 1212300 29 100.0 37 ............................. AAGTTTCCAGGCGAGCTCAGTCGTCCTCATTTTTCAG 1212234 29 100.0 38 ............................. GATCTTCCTCAGTTCAATAGCCATGACCTCCATCATAT 1212167 29 100.0 38 ............................. GTTCACAAATATTGGATATGGCTGAGCAGGCATCAAAC 1212100 29 100.0 38 ............................. GTCACAGTAGTTACTGTAATCATAGACTACTATCCGTC 1212033 29 100.0 37 ............................. GGAGTTCCTGGCAGTGATGTAGGCCCTGATCTTAGCC 1211967 29 82.8 0 ..........CT.............TTC. | ========== ====== ====== ====== ============================= ========================================== ================== 42 29 99.6 38 GTTTCAGTAGTCACAGAATTGTGTGGAAA # Left flank : CTGGAGAGGTATTTCTACGTTTTTGAGAGGTGAGTATCACGCCGAAAAGGTTCCTTTTCCCAAACGGGGGAATTACCGGGGTTAAAACTGGGATAGAAGGGGCAAGATGAGACTGGAAGTCAAAAATTGTCGTCCCCAAAATGTAACAATCCGTAATATTGCACGGTTAATATTGTAACCCGTTCTAAGGGAGAATTTGAGAAAACTCCTAAAAAGCTCCCTAAAATAGTAGTATCTGGGCCAGATAGAATCTTTTGACGATTAGTCGTCTTAGAGAGGTGTTCTCCAAAAAACACCCCCTCTCAACCCTTTGGAAATCACGTGAACAATAATGAACGTCAAAGGGAGAAGCCATACAACAGCCCCAATTGAGAGTCCCAGGGCTTATCACCCTGAAATTGAAGACCGGAAAAAGCTCGAATTCTTGAGGCTTCCAGAAACCCTTAAATATCTGGAGAGCGTAGAAAGCCAATGGGTAAAACAGGGCAAAATTCCCGCCT # Right flank : GCTGTTCTCAATCTAGGTGAAAACGGTTTGTTTTGGTAGTCACACGGGGTGGGGACCGTCTGGAACCCTTTGTTTCAACCCCTCTGATGACGTGCTCAAAACCGTTATAAACTATACCAACCTAAGTTATTTAGGCCTCCCTTCGGTGACGCTCATGAGGCTTAAGGTGGCGTTTTATCCGGACGGAAACGGAAGCATCAGACCCAACAAACACGCTGTCCAGGGATTCATCTACAACATGTTGAGGGGCACGGAGTACGGGGAGCGCCACAGCGAGGCGAAGTTCAAGTTCTTCACCTTCTCGGACTTCTTCATTGACCGCTCCGGACGACCAACCCTTATAGTATCATCCCCGGATAAAGACTTCATCAATGCCCTCCATTCCAGCTTGAAGGACAGGGTGAGTGTCCACCTCGGCACCGAGGAGCTCATAATAGCAGAACTCAAAAAGTTCAAACTGCCCCCCAGAAAGCACTTCCAAACGGGTTCTCCCGTTGTCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGTCACAGAATTGTGTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 1311457-1316976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040846.1 Thermococcus indicus strain IOH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 1311457 30 100.0 36 .............................. CTCTCAAGGGGAAAGAGGCTTTGAAGTGTTTTCGGA 1311523 30 100.0 38 .............................. GATCTGAATTCGTCAATGTTTTTCCCGACGCTTACTGC 1311591 30 100.0 35 .............................. AAGCGAGCGTAACTTACGACGGCCTCAGGCACAAG 1311656 30 100.0 36 .............................. ATTTTAGAACGGGGGATAATGGTAAGCCGTACGTAA 1311722 30 100.0 37 .............................. AAATCAGCCCCACAATAGCCAACAAAGTGAAAAGCCC 1311789 30 100.0 36 .............................. AAAAGTGCCGCTGCCCTTCCTTCCAGTACTGCCTCA 1311855 30 100.0 37 .............................. AATTAGAGCGTAGTTGTTTTGGGTGAAGAAGGCCTCC 1311922 30 100.0 37 .............................. TGAATAATGTAACTCCCAGTCCTGCCATACTTAGCAA 1311989 30 100.0 38 .............................. AACATAGATTACACTCTTATCTGTCCCAACACCATAGT 1312057 30 100.0 36 .............................. TCGATTATCATGCCGAACAGGCTACCGAGGAAGGTC 1312123 30 100.0 35 .............................. TCGAATAAACGGGTTCGGGGTGGTTTGGGTGAGTA 1312188 30 100.0 37 .............................. CTCGCCAACATTTATCATCTCTGACTTAAACATCCTG 1312255 30 100.0 37 .............................. CGATGCTTCTCCTGATTGGCATTGGAGTGCTCTATAT 1312322 30 100.0 37 .............................. CGAACTCGACCCGAAAAAACTCCCCCTTGATGTGAGA 1312389 30 100.0 37 .............................. ACCTCTCGGCAAGGTCACTAGGATAAACTTGGCCATC 1312456 30 100.0 37 .............................. GTGATAGCTACCCACAAAAGACCGTCGTGGCGTTTTT 1312523 30 100.0 37 .............................. ATAATATTATCAACCGGAACCTCAGTCCTAACAACAC 1312590 30 100.0 35 .............................. CTATCTTGTCCCTGTCCACCGCTCCGAGGCTCAGG 1312655 30 100.0 37 .............................. CCCTTCTAATGGCCGTTATCTCCCCGCGTTCTTTGAG 1312722 30 100.0 36 .............................. AAAGATTAGAGAACTTGGAAGGAGAAGTTAAGGACC 1312788 30 100.0 38 .............................. ACGCTCTCAGGTATGGAAAGGGTCTTAACCCGGACGTT 1312856 30 100.0 37 .............................. AAGATTATGAAGAGCAGTCCTGTGAGCGTCTGATACT 1312923 30 100.0 38 .............................. CGAAAAGGCATGTCGTAAAGAAGAGCGACTACAAGACC 1312991 30 100.0 35 .............................. CGAAGTCGAGGAAAAAGAAGGTTCAAGAGGCCTTG 1313056 30 100.0 36 .............................. TAACTCTCTCGGCGAGGGCGTCCCTCTCCTTCTTAA 1313122 30 100.0 37 .............................. TTGAGTACCTGAAGAAGAAGCTGGCCGAGCTGAAGGA 1313189 30 100.0 36 .............................. CTGTAAAACCGCATCCTCAATGAAACGGCTCCTGTT 1313255 30 100.0 38 .............................. CTCGCTAAGTTTTCAAATATTGGTTCCTCATGGAGTGT 1313323 30 100.0 37 .............................. GCCTGGAAGTCTTATCTGCTTCGAGTACGGGGGCAAG 1313390 30 100.0 38 .............................. AGAATGCCGCTTCGCGGGCCTCAGTGATTTCCCGCTCG 1313458 30 100.0 36 .............................. GCGGGTCCCAGGAAACGCCCACGTTGGGCGCTGAAG 1313524 30 100.0 36 .............................. TCGTGTGGGTGTGGACCTTATCGGCGAGGTCCGAGG 1313590 30 100.0 37 .............................. TGTTCCCACGGCCCCAATTTCCTCAAGGTCTTTCTTG 1313657 30 100.0 39 .............................. GCGTATTCAACCGCTCCACAAAATCCCACGAGAGGTTAA 1313726 30 100.0 36 .............................. TAGTTGTCTTCAATATACTATACACATTCAACCTTT 1313792 30 100.0 37 .............................. GAGGCCTTCCTGGACAAAATCACGTGGTCACCTCTGT 1313859 30 100.0 37 .............................. GGAGTAGAAGCCCGCCGCTGAAACTACGCTTAGTCCT 1313926 30 100.0 35 .............................. TCTGGCCGTTCCACTGCAATTCAAGCGTGTAGGAG 1313991 30 100.0 38 .............................. CTGTACTATCTCCTCCTCCCCCTCTGGGGCGGGCACTT 1314059 30 100.0 37 .............................. CATTGAAGGTGTCTCTCAGGAGGAGATGCTGAAACAG 1314126 30 100.0 37 .............................. TCGTGGAGGACTTCATAATCCTCCCCCTCCTCAACCA 1314193 30 100.0 37 .............................. ACAGGCTGACCCAACACAGCAATAGCAGAATAATCCT 1314260 30 100.0 39 .............................. GTTGATGCCAAAGACACGCCTGAGGCGATGTCATTCACC 1314329 30 100.0 36 .............................. CCGGTTGAGCGTGTTATTGGGAGTATTAGGGCTGGT 1314395 30 100.0 38 .............................. TGAAGCCGGTGAATGTTGTAGTATATGTTCTCTGCAGG 1314463 30 100.0 36 .............................. CGAGGAGCTGCGCCGTATCCTCACAGACGAGTACAA 1314529 30 100.0 37 .............................. CTGCTCCTGGAGCGCTGGCTACGAGGAGGATGAGCAT 1314596 30 100.0 35 .............................. TGACAGGTACGCGGACAGGCTGAGGGAACAGATTG 1314661 30 100.0 37 .............................. CTCCTGCGAAGAGGACGTTGTACCTGGTGAATGACAT 1314728 30 100.0 37 .............................. AGGGAATCCTTGAGGCCAAGCTCTACGTCATGATAGA 1314795 30 100.0 37 .............................. ACTTAGCCTCTGCAACCTCCATCCTACCCAAAGTGAA 1314862 30 100.0 36 .............................. GAAAGAGAAGTTTTATGTTAATGGTCAGTTTGTGGC 1314928 30 100.0 37 .............................. AACCAATCCAGGAGGAAGAAGGACATAGACTTACCAC 1314995 30 100.0 37 .............................. CACCCCTGGCATGGGAATAGTGTTGGAGGTCCCTAAC 1315062 30 100.0 39 .............................. CTGAACATCAAGCTCCGGGATGTCCCCGGAGACATCCAT 1315131 30 100.0 38 .............................. CCGGGTAGGTCTATCAGCTCGGACTTCTCCTTGGCCTT 1315199 30 100.0 36 .............................. AACTCCCTGTCCACTATCAAGTATACAGTATAATCA 1315265 30 100.0 36 .............................. GCAAGGAGCTGACGGAGCCGAGGAGGGAGAGGATTA 1315331 30 100.0 35 .............................. TCAGGATTCAACAAAGCTTTAATTTTCACTATTTT 1315396 30 100.0 35 .............................. TCAGGATTCAACAAAGCTTTAATTTTCACTATTTT 1315461 30 100.0 36 .............................. CAGGGTTCGCAGTTTTCCTCTACAAGGACACCAGCC 1315527 30 100.0 37 .............................. GAGATATTGAACTCTATCCTCCTAACCAACGCTGGAT 1315594 30 100.0 37 .............................. AGGAGGGGTGAGCATGAACAAGTTCTTCGAGATGGTC 1315661 30 100.0 37 .............................. TCCTTGAAAAAGCCGCGGAGGAGGTAGAGGTAAGAGT 1315728 30 100.0 37 .............................. TTCACTATTACGCCCAAGTTCGCCGCGTCAACGGAGT 1315795 30 100.0 37 .............................. GAAAGCCTGTCTGCCTTCCTCTGTCGTGAGCGAAAAA 1315862 30 100.0 35 .............................. AGTTTCCCGTCGCCATCTGCCACCGCTAGGAGAAT 1315927 30 100.0 37 .............................. AGGAGTAAATGGAGCTTTAAGGCTCGATTAAAGTTTC 1315994 30 100.0 36 .............................. GCATCAATGCCGGGTTAATCGGCCGGTGGGCTTACG 1316060 30 100.0 37 .............................. CGAGGGTTTACAACGCCTGCAAGAGGGCCTATGAGGT 1316127 30 100.0 38 .............................. GAATTCCCCACTTTCGAAGAGCTGATACGCCAAAAGCC 1316195 30 100.0 38 .............................. CGCATTCGGCCTCACGAAGAATCAGAAACTCGCCTATC 1316263 30 100.0 37 .............................. CTGGAGGTTGGGTGATGGATTTAAGCTCGTACCGGCC 1316330 30 96.7 39 ...............T.............. TGCGCGTGGACAAAAAAACCGGCAAGTGGGTAGTGTATA 1316399 30 96.7 36 ...............T.............. AGAAAAGAGTCGAGGAGAGGCTCAAACAGCAGAGAA 1316465 30 96.7 41 ...............T.............. CCAACTGAGTAGTCAATGCCAATGCCGCCGAGGAGCGCGAG 1316536 30 96.7 36 ...............T.............. AACATACCAAGCAAGGACAAGCTCCCACCATTTGTA 1316602 30 96.7 36 ...............T.............. AATGAGGAGAAGGATATGAAAGCTCAGCACGAGAGG 1316668 30 100.0 37 .............................. GTAGTCGCCGGAATCCTGCTCCTCGTGACCGCCATCG 1316735 30 100.0 37 .............................. TCAATAGTGATATGGTCATTTGCAATCTCAACCTTAC 1316802 30 100.0 36 .............................. CTGGAGGAGTGCCTTGTTCGCGCCGACGGTTGCGAG 1316868 30 90.0 48 .........G...........G.C...... AGAAAACTCGGTGGAAGCTCGAGAGGGTGTGGGGGACGGAACGTCCCC T [1316894] 1316947 30 80.0 0 CGGA.................C.......C | ========== ====== ====== ====== ============================== ================================================ ================== 83 30 99.4 37 GTTGCAATAAGACTCCAGGAGAATTGAAAG # Left flank : TACAACCCGAGGATAAGGTACTGACCTGGCGTCATCACGTTCTTCTGCCCCATTTCAGGCCTTTTTCTCCTAACCAGGGCCTTTTGCCGGAACAAAGCCCTCAACCGCCCCCGGAAATCGATGTCTGGTGTTTTTTAAATGTAACTTTCAGTTCAGGAAATTGGCTTTTTTCATAACGAATTTTCTTCGGAGTTGGAGGCGGGGCACGTTAGAAGCTGGGTTTTGGCCAAATCCTGATTAAATCATTTCTTTTTATCCCCCGAATGTTTTTAGGTTTTTGTTTTTGGTTCTCTCCCCGCCCAACCCTCTGGAAATCTATTGTATGCTTTTGTTCACTGGTTGCTTTGAGGGCCTTGCGTTTGTCTTTTTGGTATTTTGGGATTAAGAAACGGCTCTGTTTGGAGCGCTGTGCGGGCGTCTTTCGTGACGGTTTCCAGAAAGGTTTAAATATTGGAACGTTATTAGGCCTTTATGGACCAATCGGGGCAAAATCCCCGCCT # Right flank : CGCTACTAAAGGGTTTAAATCTTTTGCCTGCCCCAAAAGTGATTTATATTCTCGCATCGATTCCCCTATCATGAGTTTGAAGGTCCTCGCCAAGCTCTACCGGGTTGCCAAGGGTGATGAAAAGGTCGAACGGGCCTGGGAGCTCGTCCGTGAGGCCGCCAGATACAGCCTTCACGAGCCGTACTGGGGCTTCCTAAGGGAGAACTTCGATGTCCGTGCGGAAGAGGTTAAAGAGGCCCTGCGCTTCCTGGAGGAGAGGGGTGAGCTTCAAATCAAGCGTTCCATTGACGGCAGGAGGCTCTACGTCTCAACCCTAAAGGATATAAGGGAGAACCCCGTTAGGCTCGACCGATGGCTGGGATTGACCTGAGGAAGACCACGGGTGAGATGATACGCAACGGCACCTGGAAGTTCGAAGGCGATGTCTTCTACCAGGCCTTTGAGAGCGGTATAGCCGGCTACGATGGAGAGAACTTCATCTTTCCGGGTTCATGGTCAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCCAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 1591482-1592520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040846.1 Thermococcus indicus strain IOH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 1591482 28 100.0 43 ............................ CCTCGTATGAGATCGTTTTTGGGACAGCAAAAACATGTCTTAT 1591553 28 100.0 45 ............................ CCCAACCCTGTAAAAGTAGCCATTCATCAGTTTCTCCATCCCATG 1591626 28 100.0 45 ............................ CAAAATATCCTTGTCCAAGGCCACCATGATTATTTTGGCTTTGAT 1591699 28 100.0 48 ............................ CCTTCTCTGCAACTCCAGGAATTTTCGCACTCACTGGTGAGTCAACAT 1591775 28 100.0 42 ............................ CCTCTATGTACTCCCGGTCACAGCTTAAGAGCCACTTTGCCC 1591845 28 100.0 39 ............................ CGCCTTTGAAGGAACTTACGGGCCATTTGAACTTGGGAA 1591912 28 100.0 49 ............................ CCCCCTCCGGATCAAAAAATACGTAAATCCTATCACTTTCTATTTTCAC 1591989 28 100.0 42 ............................ ATGCCGATCATACGCGATAAGCCCCAGTCTGATTGCTCTTCA 1592059 28 100.0 44 ............................ AGTTTGCTTCCGTTGGCTCCTTCAACGCGTCCTCCATGAGCTTC 1592131 28 100.0 41 ............................ AGTCTTATTTTTTCGGTGAGATTTCTCGCTACCTCCTCCGC 1592200 28 100.0 45 ............................ AGCATCCCATTCCTTGTCCGCCCACCTTCTGCTATCTTGTCTGTC 1592273 28 100.0 44 ............................ CCTCCTTGGCAGGCTTTCCAGAATCATAGCAAATGTGGTCGAAA 1592345 28 100.0 44 ............................ CACCCATGTGCCCTTCTCTGGGAGCTCCGGGGCTTCTGTTTCAA 1592417 28 100.0 48 ............................ CTGCAAGCCTGTGCAAGTCGGCGATATGCCTGCCCAACTTCCATTGAC 1592493 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================= ================== 15 28 100.0 44 GTTTACGCAGAACATAGTTGTTTGGAAA # Left flank : AGTAAAGCGCTGAGCTCGGCAAGATTGTAAAATTTTGGAAGAGCTAAAAAACATCTTTTTAGGACTTTTTGGGCTGAAATGAGATTTTAAGAACGTTTTAACGTGAGTTGGGAGTTTTACTCATAGTTTAGAGATTGAGGGATTTTTGTCCCTTTTTTCAGACCTTGAAGGTTTTTGCAGGAATCCCGATTGTGGATTTTTGAAAACTTCGGAGTTTTTGGATTTTGAGACTCTGTACCTCTAGACTTTAGGCGCTCGTAAGGCGCTTGATTAAAAGCAGTCTTAAATTTCTTGGGAGGGATTCTCTCGGCTGTTTAAGGATTCCAGTCGAAGTTCCAAGTTTGTAGGCTTATAGTTTCTTCCCGTTTTTCATACCGGTTCCATTTCTTCTTTCGTGTCCATTTTAATGTTTCTTCCATTGAATTCGTCTCCCGCAAGCGTAATGTTTTTAAGAGGTTGATTTGCATCTTTACTTACCTAAAGGGGTCTCCAGAGGCATG # Right flank : AGCTGCTTAAGAACCCGTCAAGAGTCTTTTTAACGATCTCTTGTGGAGTTTACCAAAGACATGGTGTCCTTTAGGCGGGGAAAGCATTCCTCCCCAATGGACGCTGGGAGGGTTTGAGGCTGTGCTCCAGTGGGGTGGTGCTATGAGGGCCTACGTTACCGTCGTTGGAACGACCCCCGAGGCGGTCTTCAACCCCCTCTGGTATCTGGCCGAGGTTTACTCGTGGATTCCCGAGAGGGTCTACCTCCTCTGGAACGATGACGTAACCGAGCAGCTTGAGCTGGTGAAGAGACTTATCGGGAAGCTTTCAGAGGCCTACAGGGTTTCTATTGAGGTGATAGCCGACGAAGGCATGAGCTTCACCGAGGAAGACCCCGTCCAGTTCAGGGAAAGGGCTGGGGAGCTGATAAGAAAGCTGAAGGCAGAGGGGCACGAGGTCGTCGTTGATATAACCCCCGGCAGAAAGTTCATGAGCGCGCTCCTCCTCGGCGCGGCGATCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACGCAGAACATAGTTGTTTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 1711326-1713317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040846.1 Thermococcus indicus strain IOH1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1711326 30 100.0 35 .............................. AGGCTGAGGAACGCATCAAAGTCTTGGCCGTAGAA 1711391 30 100.0 37 .............................. AGGTTCGCTCGCTCTTCCACTTCAACTCGAAAGCCCC 1711458 30 100.0 38 .............................. CTGGCTCCCTCTCATACTCCCCGACATCGTAGATTTTT 1711526 30 100.0 38 .............................. AGGTGCTCCTTTCTCGAAGAGATAGGCCGGGTAGTCGA 1711594 30 100.0 36 .............................. GTTCACGAGGGGCTACTCGTCCCGCCGCCTTGACCA 1711660 30 100.0 36 .............................. AGAGGTTGGGCCAGGGACGAGAAGATAAGGGCAAAG 1711726 30 100.0 36 .............................. TGTGCCTTGAGGTTAGGTTATATCTGTAGAATACGG 1711792 30 100.0 36 .............................. TTGTGACCTTCACGACAAAGAATTGGGTTAGATTAT 1711858 30 100.0 37 .............................. CCCACAAAATCTTATAATCACCATCAACTTCCTCTTT 1711925 30 100.0 37 .............................. ACAATCATACACTCCACAATACCATCCTCATCATCAT 1711992 30 100.0 37 .............................. TTGTAACCTGTCCTGACGTATGTCACGAGCTTCCGCG 1712059 30 100.0 36 .............................. GGCTCAAGGCTGTCAGTTCTGATGAGGTAAAGGCTT 1712125 30 100.0 36 .............................. GGCTCAAGGCTGTCAGTTCTGATGAGGTAAAGGCTT 1712191 30 100.0 39 .............................. AGAATGCCGCTTCCCGCGCTTCCTGAATCTCCTGCTCAA 1712260 30 100.0 37 .............................. GAGAAAGAAGCTCGCGTCTCTAAATAAACGCAAAAAG 1712327 30 100.0 37 .............................. AAGCTGGGACTTTATCCACCTCGGATACCACCCAGCC 1712394 30 100.0 43 .............................. TAGGGATTATTAAGTTCGTTAGGGGAAAGCGGGGCGACATCAT 1712467 30 100.0 33 .............................. GATTGACGACATACAGAACCTGCTGGCCACCTT 1712530 30 100.0 38 .............................. AGGAGCCTCTGAATAGCCCTCACCGAGCGAGCACCATT 1712598 30 100.0 38 .............................. ATAGTGTTTCCTGTCGTTTTCCACTTCACCGACACCCT 1712666 30 100.0 38 .............................. TTAGAACCGCCTCCCGAACATAGTCCAACCCCAACCTC 1712734 30 100.0 37 .............................. ATGGCCTCGATTGGCGTGGAGAAAGTGAACCTGCCAC 1712801 30 100.0 36 .............................. ATCGTGAAAGACAGGAGAGGGCGTTTTTAGCCAAAG 1712867 30 100.0 36 .............................. AAGGCCCCCGACAATAATCCCGGTTATGACGCCCAT 1712933 20 56.7 1 ................CCC.---------- T Deletion [1712953] 1712954 30 100.0 35 .............................. TGAGGTCTCAACCACAGTTCTTAACAGGGTGTCCG T [1712970] 1713020 30 100.0 36 .............................. ACAATCTCTTTTTGGTAGATTGGATACCCCCCGAAG 1713086 30 100.0 37 .............................. TTTCGTTAAGGATTAGAGAGGCCTTTTTGTAGCTCAA 1713153 30 100.0 37 .............................. GAGAGGGAAGGGTGTTGATTTCATAGTGGCGGTATTT 1713220 30 100.0 38 .............................. CTGAGCGGAAGGTTAATAGTGTAATTGATGATATGGAG 1713288 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =========================================== ================== 31 30 98.5 36 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AATCTGGAAGCTGAGGGAGCTGGGGTTTAAGGTTCTATCACGTTAATACCCCCCGTTTTCTGGTTTTGGACTCCCTTTGGGCAGATTTTTGGTTTCGAAGCCCCGCTGTGACCTTGGAAATCGATTTTTAGGTTTCCCGAATTGTGACCCTTAGTTATGTCTTTGCCGCATTTTTGTAACGAATTTTTTTCGGAAATCGGAAAGAGGGTAGTTCTGGCCCACGCTGTGGCAAATCTCCACTTAAATCGTGTTTTATATCATTCTGACCAATTTGATGGGCCAGCTTCCAATTTTCCATTGTGACAGCCCCCGGGAAATCTCGGGTCTGTTTTCGCGCATCCGGAAACCGGCTCGAACGTGTCTTCTTATATCCCTTTGGACTTTTTCAGAGGCTTTGCTTAATGGCCTCTATGGGTTTCTTTTGCCCGGGTTCTCAGAAAGACTTAAATATTTGAAGGTTCTTAGGGCTTCATAGGCCAATCTGGGCAAAATTCTCGCCT # Right flank : TGAGAACCAGCGGCTTCGTCTCGCTTTTTCAGGTTGCCGGTTTCACATACAGAAAATCCAATCTGAAATGTTGCGTCTCACAGGAACTCCCCAAACAGCAGGTCTTCCCTCGCCCCGCCCGCCTTCTTGAATATCCTTTCACTCCAGGAAACGCCGCCCACCTCCCCCGGTGAGTGGGCATCGCTCGCGAAGGTGAGCTTTATCCCGCGCCTTATGCACTCACGGATGAAGTCGATGTCAGGTACCCGGTAGCGGGAGCTTATCTCAAAGGCCTTGCCCCTGGCCTCCGCCAGATCGAGTATTTCCTCCAGCTCGTCGGCGGGCGGGAAGCCGATGTAGGGGAAGCTGGCTCCGAAGTGGCCGATGATGTCAACGTTGTCGTCTTCGAGGGCGAGCTTCACCAGCTCCACGTATTCCTCCGGCCTCTCGAGCCACTCGTGGACGCTCGCTATCACGTAGTCGAGCTTCTCCGCCATGAAGTCAGGGACATCGATGCCCCC # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //