Array 1 167058-169160 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXZ01000010.1 Trinickia caryophylli strain Ballard 720 NODE_10_length_210019_cov_21.5489_ID_2497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167058 29 100.0 32 ............................. CGCGTCGCAGGGACGTGTTTCTGCAAGGTCGA 167119 29 100.0 32 ............................. GCGGCATGAGCGATACCAGCGAAATTCAGATT 167180 29 100.0 32 ............................. TCGAGGACACCCGTGAATTCGTGCTCGTGGGC 167241 29 100.0 32 ............................. CTGACGTCCAGATGAATTTCATGACGCCCGTA 167302 29 100.0 32 ............................. CGGGATCACAGTAACGGGTAACGCAACGATCA 167363 29 100.0 32 ............................. AGGTGGCGAACGTCATAGAATCAACTGGCTCA 167424 29 100.0 32 ............................. ATGTGATCTTCCAGATGCTGGACGAGTGCACT 167485 29 100.0 32 ............................. TTGAGGGCTGGACGCCGGAGCATGATGACAGG 167546 29 100.0 32 ............................. CATGATCGCGGGCGTGACGCTCGTGGCGAGGA 167607 29 100.0 32 ............................. CCCTCGAATCGCAGCTAGCGGCGCGAGAGAGC 167668 29 100.0 32 ............................. CTCTGGAACAACGGCGGCACTCTCTCGGTTTC 167729 29 100.0 32 ............................. CGCTGATCGTTGGCAAGGACGGAATCAAATCG 167790 29 100.0 32 ............................. GCGGTGATTATGGGGTGCTGTTCTACGCGCAT 167851 29 100.0 32 ............................. CACGACGAACATCATGACGCCGAGCACCGTAA 167912 29 100.0 32 ............................. CCGGCCCAATTGGTGACGGGCAGACGCGGGAT 167973 29 100.0 32 ............................. CCTTTGAGTATCCATAGGGGGGCTGCGTGACC 168034 29 100.0 32 ............................. GATTGCCGCGCATTCCGCTCGGTCGCGGGCAC 168095 29 100.0 32 ............................. ACGACGAGCTGGGGTAGCGGCGTCGAGCAGAT 168156 29 100.0 32 ............................. CGCTCGTAGCCGCCGCTCGCGTTTCGCTTGAG 168217 29 100.0 32 ............................. TGCGTCATAAAGGAATGCAGCGGGAACGCGAT 168278 29 100.0 32 ............................. CCAGTCGGCCGCGGCTCCCCCGTCGGAGACAA 168339 29 100.0 32 ............................. CGTATGAGCGCAGTCGAAGAACGGCAAGACGC 168400 29 100.0 32 ............................. GCCGGCGTCAGTAACTTCTACCTAAATGGGGC 168461 29 100.0 32 ............................. CCCGCTTAAGCAGCTTCTCCCGGACTACAAGG 168522 29 100.0 32 ............................. GTGTACTCGGTGAGCTACGAGTCGGCCCTGCG 168583 29 100.0 32 ............................. ACGGCGGGCGTCTCCACGCGCAAGGTCTGGAA 168644 29 100.0 32 ............................. CAAGCCTACGAGACGTTCAAGGCGCTGTCGCA 168705 29 100.0 32 ............................. GTTCGATAGAGTAATACGCGACCCACTCGCCG 168766 29 100.0 32 ............................. ATCAATTCGGTGCGATGGCGGGCGACGACAAG 168827 29 100.0 32 ............................. AGCATGATAGGGCTCGGCGTGAGCCACGCCAG 168888 29 100.0 32 ............................. GATCAGCCGTGGCGTTGTTTGCTGCGGTCGTG 168949 29 100.0 32 ............................. CACCTCGTCGATGCCGCCCAAGGCAAGCATCC 169010 29 100.0 32 ............................. GCAATCATCAGCGGCGGCCTGACGCTCAGCGC 169071 29 96.6 32 ......................C...... CCTATGACGAGGGGATGGCCGAGCTCGAACGG 169132 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : TTCCGGACATCGAAACGTTGCTTGACGCCGGTGAGCTAGCCAAGCCAGAAGCGCAGGGCGTGGTGGACGCGGCATTCCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCGAGGCTGCGAGGGCGGATGGCGATCTGGCTGCTAGAGGTTCGTGCCGGCGTTTACGTAGGCAACTACAACCGCAAAGTCCGAGAATATCTATGGCAACAAGTGGAAGAGGGGTTGGATGATGGCAACGCGGTGATGGCTTGGCAGGCTGCTAATGAAGCAGGTTTTGATTTTGTCACGCTGGGGACCAACCGCCGCATGCCAGCCGAGTTTGACGGTGCCAAGCTGGTGTCTTTCCTTCCGCCTTTGCAAATCGGTGATGTAGGCGAATAACGCCGTTCACGGCGTGATGGGACCGGGTTCGTTCTTTAAAAATTGGTAAGTTTCGGAGTGTCGTTTTTGTTCTGTAAAATCAGTTGGTTACAGTTGGT # Right flank : GACTCCCATTTACCGTCGGCGCAGGCCTTCAAGGCTGCTTTGCCGGGCGGTTACACGCGAGCTTGACGGCAGCCTCGTTAGTCGGGGGGCGACTGCTCTAGCCTTGCGGTGGCAGGCCTCTTCGTTGTGCGAGGCGCATTGGAGTCTCATTGCGCCAAGCAAGATCAGAAATCACTGACACATACGCGGTGCCATTGGCGTTTGCGTTCTATGTTGCTCGGTCATCTGGCATTTCTCACCGCTACGCACGGAGTTGCAACTGACAGACACCGGTACGTGCCAGGGCATCGAGATGTCCGCAGGACAGTTCTGGCTACTCGCGGAGCATCCTAGCCGGCTCATTGGAGCTGTGCCTTCAAAACGCGGCGGCGGTGACGGCCGGCAGTGACGCCGGCCGATTTACGTAAGCTCTCAGCTCCAATCGTCCATGTCGTGCTTGATCGTATGGCGGTTCGCGATCAGCGTTTCGACGCTCGGCTCGTTGTTCATGGCGCGCTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //