Array 1 2933317-2931637 **** Predicted by CRISPRDetect 2.4 *** >NC_022525.1 Salmonella enterica subsp. enterica serovar Thompson str. RM6836, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2933316 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 2933255 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 2933194 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 2933133 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 2933072 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 2933011 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 2932950 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 2932889 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 2932828 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 2932767 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 2932706 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 2932645 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 2932583 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 2932521 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 2932460 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 2932399 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 2932338 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 2932277 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 2932216 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 2932155 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 2932094 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 2932032 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2931971 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2931910 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 2931849 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 2931788 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2931727 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2931666 29 93.1 0 A..............A............. | A [2931639] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2950674-2949487 **** Predicted by CRISPRDetect 2.4 *** >NC_022525.1 Salmonella enterica subsp. enterica serovar Thompson str. RM6836, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2950673 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 2950612 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 2950551 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 2950490 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 2950429 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 2950368 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 2950307 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 2950246 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 2950185 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 2950124 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 2950063 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 2950002 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 2949941 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2949880 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 2949819 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 2949758 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 2949697 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 2949636 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 2949575 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 2949514 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //