Array 1 317321-318752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHV01000001.1 Salmonella enterica strain BCW_5875 NODE_1_length_497832_cov_4.22131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317321 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317382 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317443 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 317504 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 317565 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317626 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317687 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317748 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317809 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317870 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317931 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317992 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318053 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318114 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 318175 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 318237 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 318298 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 318359 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318420 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 318481 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 318542 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318603 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318664 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318725 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334885-335995 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHV01000001.1 Salmonella enterica strain BCW_5875 NODE_1_length_497832_cov_4.22131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 334885 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334946 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 335008 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 335069 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 335130 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 335191 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 335252 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 335314 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 335375 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [335417] 335417 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335478 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335539 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335600 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335661 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335722 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335783 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335844 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335905 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335966 29 96.6 0 A............................ | A [335992] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //