Array 1 37492-38599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVP01000050.1 Pseudomonas aeruginosa P47 contig00050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37492 28 100.0 32 ............................ TTTGCTCACAGACTTGAACCATCCAAGTAACT 37552 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 37612 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 37672 28 100.0 32 ............................ AGGCGCCCCCGGGCGCGGCCAAGCGCGTAGGC 37732 28 100.0 32 ............................ AGCACGCTATCTGCACATTCCCACCGGCATTC 37792 28 100.0 32 ............................ TTCTTGTGGGCGAGGGCGGCGGGCTGAAAAGT 37852 28 100.0 32 ............................ ATGATGAGGACGATACCCTCATCTCGGCGTAT 37912 28 100.0 32 ............................ TGGATGGCTCAAAGCTGTGAGCAAGGGCCGGC 37972 28 100.0 32 ............................ AGATGGCGCAGGCAAGGGCAATACAGACGGTC 38032 28 100.0 32 ............................ GTAAGAAGGCCTCGAAGATTTTCACGCTCGAT 38092 28 100.0 32 ............................ AAGCTGCGAATGTCCCCTAGCCGGTACAGCGG 38152 28 100.0 32 ............................ ACACTGACAGCGCGATCAAGACTGAGGCGAAA 38212 28 100.0 32 ............................ ATGGAGCTGGGCAACGTCGTCAGCACCCAGGT 38272 28 100.0 32 ............................ TGTCGGCCGGCGCCGTGCGCCAGTCCGGCCAG 38332 28 100.0 32 ............................ TCCGGCGCACTGCGGCAATCCTGCCGGCCGAG 38392 28 100.0 32 ............................ TGTTCGCCCGAACCTTCGCGGACCGCTTGTCC 38452 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 38512 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38572 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGATTAGAGATAGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48894-47124 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVP01000050.1 Pseudomonas aeruginosa P47 contig00050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48893 28 100.0 32 ............................ AATTGCTCCGGGGTCAGGCTGCTGGCGACCAT 48833 28 100.0 32 ............................ CTGATAGCTGGAGGTCTGGAAAGAACTCCACT 48773 28 100.0 32 ............................ TCTAGATAGGTGCGCTCGATGGCGTTGCCGGC 48713 28 100.0 32 ............................ AGATGACTCCACCGACTGACCACTCATCAATA 48653 28 100.0 32 ............................ AGTCTGGCGGCTCTACGTTGTGGTCAGAGCGT 48593 28 100.0 32 ............................ TGAAGAACTACCTGGGCCAGGCCAAGCCCATC 48533 28 100.0 32 ............................ ACACCACAGCGCCGAAATGGTTTGTCTTCTTG 48473 28 100.0 32 ............................ GGTCAGTACCACTCGATCTGTGAGGTGAGCGA 48413 28 100.0 32 ............................ GTACCCATGAGCGATTCGGCCCGAGAGGCCGG 48353 28 100.0 32 ............................ TGAAAGCCATCATCGCGACCCTGTCGCTGAAA 48293 28 100.0 32 ............................ TCCCTGAGGCGCGGGTTCGATGCTGATACCGT 48233 28 100.0 32 ............................ CAGGAACTCAACGATGAACGCGACCAGAACGC 48173 28 100.0 32 ............................ CAGTACAGCCCCGCCCCCCATCGGTAGATAGG 48113 28 100.0 33 ............................ AATCTGAGCGGTAACGTCACCCTGATCGACCCA 48052 28 100.0 32 ............................ TGAGCCTGACTCTTGCCGAGCAGGTCCGCGAG 47992 28 100.0 32 ............................ AAACGGATTTCGATCCCACTGATGGACGGTGA 47932 28 100.0 32 ............................ ATTTACAACCGTAAAACGAAAACCACGGAGTC 47872 28 100.0 32 ............................ ACGCAACGACCGTCCGCCGTCGCGTCGCCGCC 47812 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 47752 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 47692 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 47632 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47572 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 47512 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 47452 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 47392 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 47332 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 47272 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 47211 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 47151 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47-1154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVP01000051.1 Pseudomonas aeruginosa P47 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47 28 100.0 32 ............................ TGCAGAAGCAGTGCTGCACGATCGTTGATGTG 107 28 100.0 32 ............................ AGGAACTGTTCGTGCCGCGGCACCCGTTCGCC 167 28 100.0 32 ............................ ACCGTCTGGCCTTCCTTGGGCTCGGCTGGAAG 227 28 100.0 32 ............................ TAGAGCGGGCTTTCTCGTTTCTGGAGAGCCCG 287 28 100.0 32 ............................ TTCTTGCCGGTCACAGTTGCCGAGTCAGCCGC 347 28 100.0 32 ............................ GATCCGGCGATGGAGTGGAAGCAATACCAGTG 407 28 100.0 32 ............................ TCGGTGGTGTATCCCTGCTGGGATGGCTTGCC 467 28 100.0 32 ............................ TCTACGTCCGCCAATTCTCTTGGCCCGTTCGC 527 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 587 28 100.0 32 ............................ GCATGCTGTCCGGCCTGTTGATCGGCCCGCTG 647 28 100.0 32 ............................ GCAACGCCGGCCGAAGACCAGACCATCACCGA 707 28 100.0 32 ............................ TTCACCGTCACCCAGTCCTGGGTGGCGTAGAC 767 28 100.0 32 ............................ TTGGCAGCTGTAGCCAGAGCCGGATGCGAAGC 827 28 100.0 32 ............................ AGAGCGCTCTGGTGGACGGCTGGGTACGACGA 887 28 100.0 32 ............................ CGTATCAGCGGGCCGCCAATGAAACCGTCGAG 947 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 1007 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 1067 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 1127 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //