Array 1 507270-512338 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025014.1 Shewanella xiamenensis strain NUITM-VS1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 507270 28 100.0 32 ............................ TAATGGGAATTGATATAAAAAACGCCCATAGA 507330 28 100.0 32 ............................ CAAACGCTCGGCCAAGGCTGTCGGCAGCATCA 507390 28 100.0 32 ............................ GACCAAACGCCGTCTTTCGGCAAATATGGACG 507450 28 100.0 32 ............................ TTCAATATCGCCCTCAAGACTGGTATCAATCC 507510 28 100.0 32 ............................ GCTTTGAAGCCTCTATCATGCCTCGCATGTTA 507570 28 100.0 32 ............................ ACGCTACAGAGGACAAGAGCAGGCCAATAAAA 507630 28 100.0 32 ............................ ATGACGCAATGGCGAAATCACTAAAACCTATT 507690 28 100.0 32 ............................ TGATGCCGCGGCTATTCAAGCGGCGGCGATTG 507750 28 100.0 32 ............................ TTCCACGGCAATGCCTCGCTGCAGTTGGTTTT 507810 28 100.0 32 ............................ TACTGTAGTGCCGTGGCGCAGTACTGGCAGCA 507870 28 100.0 32 ............................ TCTCACCGAGATTGATTTTAAGTTCTTCTTCT 507930 28 100.0 32 ............................ ATCACTATCTTTAGGCCATTTGTTTGGGCATG 507990 28 100.0 32 ............................ TTTTTTTGCGCCGCGCCCGTGAAGCACAGTGC 508050 28 100.0 32 ............................ GCAAACTACTTCATTGCCTATACCGCCAGTAA 508110 28 100.0 32 ............................ CTGACGATGCCAAACGGTCGCAGACAAAACCG 508170 28 100.0 32 ............................ AAAAACTACCCTTGGCTTAACGCAGATCAACG 508230 28 100.0 32 ............................ GACAAAAGCACTAAACAAAGCCGAGACTTCAG 508290 28 100.0 32 ............................ CCGTATCCCCGTCCTGCCAGACCGCTTTTTCT 508350 28 100.0 32 ............................ TAGAAGAAGTGGCTGCAATTGTCGAAGCCATC 508410 28 100.0 32 ............................ TTGAGAACCAACAAAGCAAAGCCCGTGGACAT 508470 28 100.0 32 ............................ TTGCCAGACATAACAGAACCGGTGACATAAAT 508530 28 100.0 32 ............................ AAAATCTGAACCTACAGTGATGGTTCGTGTTC 508590 28 100.0 32 ............................ ATCGCCGGAACCGATTTCAGCTTCCACGTGAC 508650 28 100.0 32 ............................ TTAGGGGTTTTATGCTTATCACATTACAGGAT 508710 28 100.0 32 ............................ GTTCGAGTCGGTTACGTCAGTATCGTTCTCAT 508770 28 100.0 32 ............................ AACAGATAGGCCGTCTGGTAGAGACGTGATTC 508830 28 100.0 32 ............................ CATATCCCATAGCAGCCATTCGAACGCACCGA 508890 28 100.0 32 ............................ ATTACGTAACCGTTGGGATTCGGGTTAGATCC 508950 28 100.0 32 ............................ GCGACAAATTAAACGTGTGATCGTATCTGGTC 509010 28 100.0 32 ............................ ATAACGTTCAGGCGTAACGAGGATTTGCTCTG 509070 28 100.0 32 ............................ ATGTATATAATTTGAGGATGTTTAATCATCAC 509130 28 100.0 32 ............................ TATACTTGTTAGCGGAACTTACTACGTCAAAG 509190 28 100.0 32 ............................ ATCATTCAGTCGATCAAGAATGTATGCTCAGA 509250 28 100.0 33 ............................ GTTAGTCTCGGCTAAAACCTTAATTGAAACCTC 509311 28 100.0 32 ............................ GTCAGCAAACATTGTTTGAGCACGGCTTTATC 509371 28 100.0 32 ............................ TTCTTCATTATAGATGAAGCGACATTAGTCAG 509431 28 100.0 32 ............................ AGCTACGGGTTGTTGATTGCTAGCAACGCCTT 509491 28 100.0 32 ............................ TTATAGCCTTTTGCTGCTGCGGCACCGGCTAA 509551 28 100.0 32 ............................ TGTTGGAAGTTGTGATACAGCCGTTGAGAAAG 509611 28 100.0 32 ............................ CATCGCAAAAAGCGTTAATGGCATACGGCAAC 509671 28 100.0 32 ............................ TTTTATCTTCTTTCCCTATGTGGCCTCCTGAA 509731 28 100.0 32 ............................ AATATGCAGGGCGTGGGATGAATCGAAGGTTT 509791 28 100.0 32 ............................ AAGCTGGTTTCGCTCGGGCTTAACCCATCGCA 509851 28 100.0 32 ............................ ATTTCGGTGTTGAAGATAATAGGGCGCTGTTT 509911 28 100.0 32 ............................ GTATACCGTTCCGCTTGTCAGGTTAACGAATT 509971 28 100.0 32 ............................ AGCTAGCCCAGTGAACGGCTTGCCAATGTCAG 510031 28 100.0 32 ............................ AATAGAAATCAAAAAGACCGTCATAAGAACAC 510091 28 100.0 32 ............................ TCACCCTCGATTTCTGCGTCAGTCCAGTTAGT 510151 28 100.0 32 ............................ CATTAGCTCGACGCATTTATCGCGAAACTCAT 510211 28 100.0 33 ............................ GGGTAACGCTGACCAACTAATTAAAGACGCAAT 510272 28 100.0 32 ............................ AAGCGGGTCGTTGAATGATGAAAATGGGTTTA 510332 28 100.0 32 ............................ TACTGGGTGAGTTCAACCAAAGATGCCAACAA 510392 28 100.0 32 ............................ TCAAATAACAGGTAAGCACTCCACTGAAACGT 510452 28 100.0 32 ............................ TCGCCAATCGTAATTGCATCAGTCGTGGCATC 510512 28 100.0 32 ............................ AATATCCCGAAGCGCCGGGGCTTTCCTTTTCA 510572 28 100.0 32 ............................ ATTTAGGCATTCTAGGCCAGCGGTACTCCTTA 510632 28 100.0 32 ............................ ATAAAGACGTATACAAATGCCTGTTAGCTAGC 510692 28 100.0 32 ............................ ATAAAGACGTATACAAATGCCTGTTAGCTAGC 510752 28 100.0 32 ............................ ATAAAGACGTATACAAATGCCTGTTAGCTAGC 510812 28 100.0 32 ............................ ACACGACTCTCACGATCGCTCAATTTCGTGCA 510872 28 100.0 32 ............................ TAAAACCGCAGCACCACTAATGCAATTAAACT 510932 28 100.0 32 ............................ ACCTCTGGGAAGTAGGTTGTTTCAACGCTTGC 510992 28 100.0 32 ............................ GCCTTTGCGGTTGAAGGCAAAACACTGAACAT 511052 28 100.0 32 ............................ AATTACATCAGTTTTTAGATTTGGCGCAATTG 511112 28 96.4 32 ....................T....... TCACGGCCTTCAAATATAGCGTCTAAATCCAT 511172 28 100.0 32 ............................ TCCCTAGGTAGGCGCGGTAAAGTTCATTAATA 511232 28 100.0 32 ............................ GCCTCCAAGCCGAGGCGGGTTTGTCTAACAAA 511292 28 100.0 32 ............................ AGCACGCGCATTTGTTGGAGAAAGCAAAATGA 511352 28 100.0 32 ............................ CTATATTTATCGTTGAGTCTCGCGTGGTGCTA 511412 28 100.0 32 ............................ AAAAGGCGGGTTAGAAATTGCTGTGCATATGT 511472 28 100.0 32 ............................ TTGACCGCAAATTAAACCCAATGAAGTGCCAG 511532 28 100.0 32 ............................ GCCCCAAGTTCCACATTCACCGCTGCTGCTTT 511592 28 100.0 32 ............................ TGGCGCTCGAAAGGGCGCTGGTCGCCCCAAGT 511652 28 100.0 32 ............................ TCATTCTGCTCAAGCTCATAAAGATGTGTCTA 511712 28 100.0 32 ............................ CACAAAATCAATGGTTCGAGACTGAGCGGACT 511772 28 100.0 32 ............................ TGATTGCTTCTCTCCATCCTTTTTAGATCCGT 511832 28 100.0 32 ............................ CCAGTGAGGGGATTATGATTAGCCATACTGAT 511892 28 100.0 32 ............................ AAGCCATCAGCTTCAAAAGAGTAGCTGATACC 511952 28 100.0 32 ............................ TTGTTGCGCTATTAAAGTTTGCCCCTATAAAA 512012 28 100.0 32 ............................ AGCTAACAATCTCTTTGCGTACAAGCGCGGGA 512072 28 100.0 32 ............................ GGAGAACCAGCATCATCGAGTTCGTAAAACAT 512132 28 100.0 32 ............................ TAGCTACGCTAGGGGCGAGATCACAAGCCGCG 512192 28 100.0 32 ............................ TAAGTGGCAAGCCGGGAACTGTCAAATGACAA 512252 28 100.0 31 ............................ CGCGAGGACTAGGGCGCAGCCGACGGTTTTT 512311 28 82.1 0 A.....CA...C......G......... | ========== ====== ====== ====== ============================ ================================= ================== 85 28 99.7 32 GTTCACTGCCTTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGATCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGTAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATGTTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAGATAAGTTTTAACCCTTTATTTTTTGTTCTTTAAAAATATAATTTAAATACAATAAGTTACAATGGGTGGTTTTTAATAAGGTAAAAAAGTAATTTTTATCCTAACTGCCTGTTGTAACTTATTTTTATTGATTTAGTCTATT # Right flank : AGCTAGCCAAGTTTTACTGTAGCTAAAGCACAAGTTTGATTTGTTGTTCGTTGAAGCGACCTAATAGCGTTAAGCCTCTTTAGTGAGGCTTTTTTATTCGTTTTTTTCTAGATACTGCTCACTAAAACCTTTCAAAAATGCATGCGCTGATGTGCCACAGGCAAGGCAAACCTGCTCAAGTTCTAAGATTTTGAGTTGACGCTCCCCGCTCTCGTACTTGGATACGAAACTTTGGGGCTTTTCTAATTTAAGAGCGAGCTCACTTTGACTGAGGCCTGCATTTTTACGCATAGCTTTCAATTCATTACGTAAGGCTTCTTCTCTATCCGACCATAGCTTTTGTTTCATGGGCCGATAGTAGACGAAGTTGTAAAATATCCCATTTTGGGATATTTTGGTTATGTATTAGGGTTTCTAATATGAGTTTGGAGGTTGGTTATTGCATCAAATCTGACTGAACCAGTTGATGGGGTAAATCTAATATATTTTCTCTATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCTTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4857926-4857538 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025014.1 Shewanella xiamenensis strain NUITM-VS1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4857925 28 96.4 32 ......A..................... GCCCAGGATGCTGAAATGGCAGCACAACAAAA 4857865 28 96.4 32 ......A..................... GAACTGGCATCGGGTATCGAGGATTATCTACA 4857805 28 100.0 32 ............................ TCACCTGATAACATCCAATCTTCAACCAAATC 4857745 28 100.0 32 ............................ TATTTATGAAGTTTGAGGACTTGCCTCAATAC 4857685 28 100.0 32 ............................ AGTACCGACCATCATTAATTAGCCCTGTGTTA 4857625 28 100.0 32 ............................ TATCAAAATGATGGATTAGACCAGGTGAGATT 4857565 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTGACCTGCCGAATAGGCAGCTGAAAAT # Left flank : TGGCTTTTTTAGTCTTGGTAACGTTGACGTTGTACCTGATGATTGTGCTGAAGTGATGTTCAAACGTAATCAGGCAATTGCAAAGATTTTTGTTGGCGAGGCCCGCAGACGCTTAAAACGTTTGGAAAAACGAGCGTTAGCTCGAGGTGAGACATTTAATCCTATAAAAAATACTCAGCTAAGGGAGTTTAACATTTTCCATCGTATAGCAATGAGCAGCGGTAGTAATAAGCAAGATTACCTTCTTCATATACAGAAAATGGTAGCAAAGAAGCAAACTGAACCATTGTTTAGTAGCTATGGGTTTGCTAGCAATTTACAACTAAATGGAACAGTACCGGAGCTATCTCGTCTTGTAGATAAGATTTGACCTTTTGGTTTGGTGGTTGCTGTAACGTTTTAATTTTAAGGCCTATTATCTGTTTGAGAAATTATATGGTTATTTCCTTGATTTTGGCTCTAGTAATTGATTTTATATAGGTTTATTTTATAAGTGTATA # Right flank : AAAAACAATCGTTTCGACGTTTATGTAAATACAGCAAACTGCCGGATAGGCAGTAAAAGCCTCTTCTTACTCTATGTAGGAGGAGGCTTTTTATTGGCAATGCCCCAATTTTCGCTGGATAATTGTTTGAGTGGAAATGCGCCTTTTTAAGCTATTGATAGCCATTAAAAATCTAAAGTTTGATCAATTTTGAGGAAAATCACTACCAACACGACGGTAGACGTGAAAATAAATATTGATCAATTTCTAGCAAGCTTTGGGACAAAATTGCGTTACGGAAAGTCGAGTATTAGCAATCCATGAATAACTACTGGTATGGAAACGTCACTTAACTAAGCGCCCAGTATTAATGCTATAGATTGCATATGTTTTATGGGCATTTTTTGACATTCGCCAAATATTTTGGATCAACGACCACTTCAAACTCGATGCGCTGATCAGAGAATAGGACTTTATCCCGAGGATACACTGCACTTAAAACAACTCGACTGTTTCTATCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGAATAGGCAGCTGAAAAT # Alternate repeat : GTGACCAGCCGAATAGGCAGCTGAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //