Array 1 217-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKS01000062.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48697 N48697_contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 216 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 155 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 94 29 100.0 36 ............................. GCGTGAGGCTGCCGTCAGCCCGGCTGCGATGTTGGT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 100.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : G # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 302-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKS01000063.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48697 N48697_contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 301 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 239 29 100.0 32 ............................. GAAGTTACTGAAAGCGGTCAATTTTCCCAGCT 178 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 117 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTCCCGCCTGAACAAAATCGACCACGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1181 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKS01000076.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48697 N48697_contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 111 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 172 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 233 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 294 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 355 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 416 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 477 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 538 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 599 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 660 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 721 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 782 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 843 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 904 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 965 29 100.0 32 ............................. GTCACGTTGCTGGAACTGGGGCACGATCTGGT 1026 29 100.0 37 ............................. GAAGCGACCGAAAGCGAGGGAATGAAGCCAGGCAGCG 1092 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1153 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCCGTGGAAAGAACCAGAACGCTGGATATTGGTG # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //