Array 1 1152862-1154330 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010067.1 Yersinia pseudotuberculosis str. PA3606 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1152862 28 100.0 32 ............................ TGAAATCAGTCATGAGCGCCACGGATGGATGG 1152922 28 100.0 32 ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAG 1152982 28 100.0 32 ............................ GTGTAAAGGGGCAATTAAGCCCCTATGTTTAT 1153042 28 100.0 33 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGAG 1153103 28 100.0 32 ............................ AGATTATTTAATGGATGTTGGAAATATGAATC 1153163 28 100.0 32 ............................ AATAGACTCCCAATATTCACCTAACAATTTAT 1153223 28 100.0 32 ............................ CAATACATATAATTATTTGGCGAGATTCCAGT 1153283 28 96.4 32 A........................... ATAATATTTATCCATTTCCAGACATTGGGATG 1153343 28 100.0 32 ............................ GTGAGGCATATCCTCAAAATACATTTGTGCCG 1153403 28 100.0 32 ............................ ATGTATCGAGTCGGTGAGGGTGGGAAGCCTGA 1153463 28 100.0 32 ............................ ACGATTGCGCTCCCATCCTGAGTTTTCAGACA 1153523 28 100.0 32 ............................ AATGATGCGCCGCCGGTGAAAAATGCTGTACC 1153583 28 100.0 32 ............................ GAAACGTAGCGGCAACTCAATACGAGCAGCAA 1153643 28 100.0 32 ............................ TCCAACCTTCCGGTATTTCCGGAGAGTTCAAT 1153703 28 100.0 32 ............................ AGCACATCCCCATCATGAATTCTTGCGTCTTC 1153763 28 100.0 32 ............................ ACTTACCGCCATCATTGAATTGAATCAACAAT 1153823 28 100.0 32 ............................ GCGTTTGGTAATAATGAAGTAGGGTTATCTTG 1153883 28 100.0 32 ............................ ACTAGTGGAGGGGGAGTGAAAATGACTGATAA 1153943 28 100.0 32 ............................ AATGCCTGAACTGGATCAACCATCGCGGCGTT 1154003 28 100.0 32 ............................ AGATATGTTTGTTTATTCTACTAAGCTAGGTC 1154063 28 100.0 32 ............................ AAACAAGTACACGCAGCTACGAATCTTCAAAC 1154123 28 100.0 32 ............................ AACATCACAATATCAGTCATGATTTACCACCA 1154183 28 100.0 32 ............................ TTGTGTAGTCAAATATTAATTTAAGGAGTAGC 1154243 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 1154303 27 89.3 0 .....................CC.-... | T [1154329] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCTGGTAACAGAGCCTTATAGGCGCATATGAAAAACCTCCGGCTATGCCGGAGGATATTTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATTGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2092958-2091485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010067.1 Yersinia pseudotuberculosis str. PA3606 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2092957 28 100.0 32 ............................ GCTATCGACGCCGACAAATCCGTCAGCAGAGA 2092897 28 100.0 33 ............................ TTTACGATACAATTAATCTCGGTCAATGTCTTG 2092836 28 100.0 32 ............................ TCGTTCACCTGAGCGCTTGACTTCAATATTAG 2092776 28 100.0 32 ............................ GATGTCCATTACGAACCTCGGCAGTAATGTAT 2092716 28 100.0 32 ............................ TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT 2092656 28 100.0 32 ............................ ATATGGATCAAAGTCAGGCAGCTCCACCTCGA 2092596 28 100.0 32 ............................ GCTGAATCTACGCCATCACTCGCTTTCTGAAT 2092536 28 100.0 32 ............................ AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT 2092476 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 2092416 28 100.0 33 ............................ ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA 2092355 28 100.0 33 ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAGT 2092294 28 100.0 33 ............................ ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA 2092233 28 100.0 32 ............................ CGGATAAAGGTCCATCAATGACAAGCTGAAAT 2092173 28 100.0 32 ............................ AGAATTTACAGCCGTTATTTAGCATTGCTGCC 2092113 28 100.0 32 ............................ ATTTACCCGTTCAAATTTAGGAATATAGAGAA 2092053 28 100.0 32 ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 2091993 28 100.0 32 ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 2091933 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 2091873 28 100.0 32 ............................ TGGAGCGTAAAACCTCGTTAACCCCTTCTATT 2091813 28 100.0 32 ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 2091753 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACCGAAAT 2091693 28 100.0 32 ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 2091633 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 2091573 28 100.0 33 ............................ TCCTAGGCGCTTACCCATTCCATAGCGATCGTT 2091512 27 85.7 0 ...................A-.A.T... | C [2091488] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTAGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //