Array 1 433375-433767 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWL01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 163_15 NODE_3_length_433814_cov_33.0989_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433375 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433436 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433497 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433558 29 100.0 30 ............................. TTTGATACGTAGTATCATTACGCCTCCTAG 433617 29 100.0 32 ............................. GCGAAGGTCAATAAAAATGGTGTGGCTTTACC 433678 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : AAAAAACAGAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-683 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWL01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 163_15 NODE_22_length_71183_cov_31.001_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 107 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 168 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 229 29 100.0 32 ............................. ATGCCGGAACGCTGATGGCGTTTGACATGAGC 290 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 351 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 412 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 534 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 595 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 656 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGATAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16941-18605 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWL01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 163_15 NODE_22_length_71183_cov_31.001_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 16941 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17002 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17063 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17124 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 17191 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 17252 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 17313 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 17374 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 17435 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 17496 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17557 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17618 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17679 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17740 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17801 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 17862 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG G [17884] 17924 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17985 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 18046 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 18149 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18210 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18271 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18332 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18393 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18454 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18515 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18576 29 96.6 0 A............................ | A [18602] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //