Array 1 772730-773098 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483394.1 Streptococcus pyogenes strain NCTC10880 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    772730	    36	 100.0	    30	....................................	ATTAGCCCTGCAATACTCGCAATGACCGCA	
    772796	    36	 100.0	    30	....................................	CGTAAATTGAGAGAGTATCCACGCTGGCGG	
    772862	    36	 100.0	    30	....................................	TGACACACGGTTTAGCGCTAGTCTCTCAAC	
    772928	    36	 100.0	    30	....................................	AAAAGATGAAGACGGAGATAAGCCAACTGT	
    772994	    36	  97.2	    30	..............C.....................	GCTAGCGAAGATAGAGCTAGACAGACAAAG	
    773060	    36	  94.4	     0	..............C.................C...	|                             	T,TT [773089,773093]
==========	======	======	======	====================================	==============================	==================
         6	    36	  98.6	    30	GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAATTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  CATTGCCAATGGTAACTTGAGAGAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAATATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAATCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGCGTAATGGGTCTCATTCAAGAGACTCTGCTAG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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