Array 1 289999-292826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXDC01000031.1 Moraxella catarrhalis strain 2046210Y 2046210Y_NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289999 28 100.0 32 ............................ ACATCTGTGGGTGGTTCTGATCACACACCCGC 290059 28 100.0 32 ............................ TTACCCTTTTTTAAAAATCGGTTATTGCTATG 290119 28 100.0 32 ............................ AAGCTGAGTAGTTGCCGCTTCCATGCTGATTG 290179 28 100.0 32 ............................ TAAACCGAGCATTTCAATAGCCCCTAATTCAA 290239 28 100.0 32 ............................ GACCAGCAAAAGCGTGGCAACTTTTAGAGCAG 290299 28 100.0 32 ............................ TATCATCAAGAACCTCCTTTAACATGAGCGTC 290359 28 100.0 32 ............................ GATTCCATGCTGATTGTACCGTTTGCAAATGC 290419 28 100.0 33 ............................ ATACAAGGAACACGCCCAATGATGACTTATGCA 290480 28 100.0 32 ............................ ATTTATCTACTGAAGCGACATAAACACCTGAA 290540 28 100.0 32 ............................ TTATCGGATAAGCGGATTAACCGCCCCCAAAC 290600 28 100.0 32 ............................ TTTGACAATCATCGTATGTGGCTCAGGGGCAA 290660 28 100.0 33 ............................ CACCAAAACCTTGACACGGTCAGGATTTAGCAC 290721 28 100.0 32 ............................ GCCTCTTCCAATTTTTTCTTCAATGCTGCTTT 290781 28 100.0 33 ............................ ATTTTGATTTTTGAAGCATTGAGCGAATCTGAG 290842 28 100.0 32 ............................ AAACAAGTCGGTGAGATTATTAAGCCATTATT 290902 28 100.0 32 ............................ ATAGTTTCCGCCACAAAGCAACCGCCATACCT 290962 28 100.0 32 ............................ ATCATAGTTAATGACTTCTTGCACACCGTTAC 291022 28 100.0 32 ............................ AATTGGCGTACGCAGTGATTGGTCAAGATGGC 291082 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 291142 28 100.0 32 ............................ GCACACACCTGACAGCCAACACTCAATCAATC 291202 28 100.0 32 ............................ TAAAAGCTCATAGTTAAGCTGAGTTGCGTGAA 291262 28 100.0 32 ............................ TGTTGAAAAAATCTTTAGTACGCAGGATAGAT 291322 28 100.0 32 ............................ AACTTACTGAGCTTTCGACTGTTCTGATGCGT 291382 28 100.0 33 ............................ ATGGCAGTATTATGAAACGGGCAAACTTATCAT 291443 28 100.0 32 ............................ GCACGAAATACACGCATTACCATGTTCGCTTG 291503 28 96.4 32 ...........T................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 291563 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 291623 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 291683 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 291743 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 291803 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 291863 28 100.0 9 ............................ TTTTGCTGT Deletion [291900] 291900 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 291960 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 292020 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 292080 28 100.0 32 ............................ TACCCTACCAATAAGCATGAGATCACTGGCTT 292140 28 100.0 32 ............................ AGAGCTGACCGCCCATTGGGTTTTTAGCACAT 292200 28 100.0 32 ............................ AATCGCTGCGTACGCCCATCGGCAAAATCGGC 292260 28 100.0 32 ............................ TCTTATGCTTTTCCTTTTGCCAGTAAGCGCTC 292320 28 100.0 32 ............................ GAAGCCAAGCAGCGGCACACTGCTACCGTCTG 292380 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 292440 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 292499 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 292559 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 292619 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 292679 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 292739 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 292799 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACATTTAATCCAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //