Array 1 26272-27921 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCO01000012.1 Vibrio cholerae strain EDC_696 730_Vc_EDC_696_contigs_EDC696_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26272 28 100.0 33 ............................ AGTTGGGCTTTCGTTGGCGTCTAATAGCTCGAT 26333 28 100.0 32 ............................ TGTGTAATAAAATCCTGGTTTAGTAAAAATTG 26393 28 100.0 32 ............................ AAGCATCGTTAATGCCTGCCGATGGGGATTGG 26453 28 100.0 32 ............................ TTAACTTTGGCCGTCCTGAAGTAAAGGATCCT 26513 28 100.0 32 ............................ GCGCATTGCGTCGGGTCGTCTCTCGATAGTTC 26573 28 100.0 32 ............................ AGTAAGTCATCAAGGCGTGTTTCCAACCGATA 26633 28 100.0 32 ............................ TCTAACGCATTAGCGTACTGCGCTTGTGCCTC 26693 28 100.0 32 ............................ AGTAACGTTGGTTGCTCTAGCTTCGTACAATC 26753 28 100.0 32 ............................ CCTTAATGGTCATTGCTCGCATCTTTGGAACA 26813 28 100.0 32 ............................ TCTAGTGCCTCAATTAGCGGTGAAAATGCTTT 26873 28 100.0 32 ............................ TGATCGCGGTACGCTTGTTTTGTGGTTGGATT 26933 28 100.0 32 ............................ AACTGCCGCTAAAAAGATTGCAATACCAATCC 26993 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 27053 28 100.0 32 ............................ TCAAAGACATCTTTTTCAACAGGTGCGTTGAC 27113 28 100.0 32 ............................ AATATTCTGTGTTGGTGGAATACCTAGCATTT 27173 28 100.0 32 ............................ ATTGGCGTTAAATAGTGGGTTCATTATTTTTC 27233 28 100.0 32 ............................ TTTTTCCCACCCCATTTGCTCGAAAGTTCTTA 27293 28 100.0 32 ............................ TATGCGCTTCTCTGTTCGTTTTAATAGTCTTT 27353 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 27413 28 100.0 32 ............................ ATGCCGATTTCATCAGCAGCAATTTTGCCTGT 27473 28 96.4 32 ..............T............. TTGCTTCTCAAGCGCGGTAATTTGCTCATAAA 27533 28 100.0 32 ............................ CAATCACTTTCAATTACCACACATTCGAGTTT 27593 28 100.0 32 ............................ ATCCCAATTTGCGGATATGCAAAAATCTATCG 27653 28 100.0 32 ............................ AATAAAAAATCCGCGTCCGAAATGTCGATATC 27713 28 100.0 32 ............................ CGTTAGGGCATTTACCGTTATACTTCTGACTT 27773 28 100.0 32 ............................ TTGAGCGATAAGCTCTGGTGTTTTGTTTTTTA 27833 28 100.0 32 ............................ TACAGAGAAAAGAATCCCCAACGGACAAGGGT 27893 28 92.9 0 ......................G.A... | T [27913] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTGTTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCTTATTTTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGAGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCCTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGCGAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14844-17813 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCO01000071.1 Vibrio cholerae strain EDC_696 730_Vc_EDC_696_contigs_EDC696_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14844 28 100.0 32 ............................ GTGAAAACCGGCGATGGTGTAGAGGTTGAGAC 14904 28 100.0 32 ............................ TCGTTGCGATACCAAATCAGGTCGGGGTCAGT 14964 28 100.0 32 ............................ ACTCATCAAGGCACTAAAAGAAAGGCGGGAGG 15024 28 100.0 32 ............................ GCTATGAGCAAGGAAGCGAGGAAGAGCGCCAG 15084 28 100.0 32 ............................ ATGAAGGCCACGACCACGCATAGGCGATAAGC 15144 28 100.0 32 ............................ AGTTGAAACCGTCAACGCTGAAAAGTTTGTTC 15204 28 100.0 32 ............................ TTTACCTGGTCGAATCTACGGAGTGCACACAA 15264 28 100.0 32 ............................ TGAGTTTGAGCAATATCTTGCTGTTCACTATG 15324 28 100.0 32 ............................ TACAAAAAGGCAAAAAACTACGTACAAGACAA 15384 28 100.0 32 ............................ TGATAGGAAATCTGAGCTAGAGGCCAATTACG 15444 28 100.0 32 ............................ ACAGCAGTTATTAGCCGCTATCGCTATCTTGC 15504 28 100.0 32 ............................ GTATCATGGTGAGGGTGCTTACATGGCATGAA 15564 28 100.0 32 ............................ TAAAGCCACGTTAAACAAAGCCTAAGCCTTAC 15624 28 100.0 32 ............................ ACTACGTCACAACACCGGAGGGATGGGAAAAG 15684 28 100.0 32 ............................ GGTGTAATCCGTTCTTGGTAGAACTCCTTTCT 15744 28 100.0 32 ............................ TTTGCTCGGTTGGCGCGATTGTCGCGCTCATT 15804 28 100.0 32 ............................ GCGCATTGGTGAGCTCGCCATCGATGCCCTGA 15864 28 100.0 32 ............................ ACGGCGCGCTGCACCTTCGGCGGTGGTGATCT 15924 28 100.0 32 ............................ TTTGTTTGGGTGCGCAAAGATACTGTATCTGC 15984 28 100.0 32 ............................ CACCCCAAAAGCCCCGCATTGTCGGGGTTTTG 16044 28 100.0 32 ............................ AACCAAAGGAAAAGGCGCCCCAATTGGCATGG 16104 28 100.0 32 ............................ TAAGCCATGTATAGAACGTCGGATGATCGTCA 16164 28 100.0 32 ............................ ATGCGCAGGGCATTCAACCGGAAACACTGAGC 16224 28 100.0 32 ............................ AAACTCAATAACGATGCGCTCATATTGGTCAC 16284 28 100.0 32 ............................ GCCCTACTCTCGCGGAATGATCAAGTCATTCA 16344 28 100.0 32 ............................ AGAATCACTTAGCGTGAATGGGGACTGAGGTG 16404 28 100.0 32 ............................ TGTTCGCGCTGCTTTCGACACCAATCAATGAT 16464 28 100.0 32 ............................ GACATGGTTAAAGCGTTAATGGCTGGCGATAA 16524 28 100.0 32 ............................ TTACTTCCAAGTAAAAAAGAACGCTTGGGATA 16584 28 100.0 32 ............................ TGCTGAGTTGTGAGTGATTCTGTAATCAGATG 16644 28 100.0 32 ............................ GCACCGCTGTTTCATCCAGCCCGACTGATTGA 16704 28 100.0 33 ............................ CACTCAAAGACCAGTTCGGATTTGAGAGAGAGA 16765 28 100.0 32 ............................ AAAACCATCGACTTCGATGGGGCGGGCATCGG 16825 28 100.0 32 ............................ TCAAAGTCTTTGGCTAGTTCGTATTCATCACT 16885 28 100.0 32 ............................ TTTCTCATGCGCTTATGCACTTCTGGCAATCG 16945 28 100.0 32 ............................ CGCATACCAGAGAATGTCTTGAGGGGCGTTTT 17005 28 100.0 32 ............................ ACAGAAGGTGTAAGGGCAAATTATAACTCTGG 17065 28 100.0 32 ............................ ATATCCACCTCGAAACCGTTAAAGGTCATTCC 17125 28 100.0 32 ............................ TATCAAGAGTTTATCGATCGCGGTTACTTCAC 17185 28 100.0 32 ............................ TTTTCAAGAAACGATTCGGCATACTCTCCGAA 17245 28 100.0 33 ............................ AAGACGTCAAAGCTTGAAGACTTGCCGGAAGAT 17306 28 100.0 32 ............................ TAACTCGACAAAGCAGCTGGTCGTTAAGTCAT 17366 28 100.0 32 ............................ TTTGTTTGCTCTCCGTGTTCTTTGATGCGATT 17426 28 100.0 32 ............................ GCAAAGAGTGCGCATTGAAAATCAGTCAATTG 17486 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 17546 28 100.0 32 ............................ ATTACTACACTGCATCAAAAGAACGTGCATCG 17606 28 100.0 32 ............................ AACATCAACCGTTATACGGGTCATGTTGGTCA 17666 28 100.0 32 ............................ AATGTGATTAACTGCCGTTGCCGCAGATCGTT 17726 28 100.0 32 ............................ TTGAGGATAATCCTGATATTATCGGCTCTGAG 17786 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCATTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCAGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //