Array 1 477183-478003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIB010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-052SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477183 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 477244 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 477305 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 477366 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 477427 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 477488 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477549 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477610 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 477671 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 477732 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 477793 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 477854 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 477915 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477976 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGCATGGGAGCACGGTAAACCACTGGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCATATAAAGCTGGCCTTACCGCTGGCTGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATACCATTTCCACTGGCGCAACGATTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGTGATTTTAATGATGTGCTGACTACCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGATAACGACCTTGAGACGGTCTCAGTTCGCTGGGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGAGAATGTTCAGAACGATTATATTTTGATTTGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494550-498118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIB010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-052SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494550 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 494611 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 494672 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 494733 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 494794 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 494855 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 494916 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 494977 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 495038 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 495099 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 495160 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 495221 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 495282 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 495343 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 495404 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 495465 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 495526 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 495587 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 495648 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 495709 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 495770 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 495831 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 495892 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 495953 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 496014 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 496075 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 496136 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 496197 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 496258 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 496319 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 496380 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 496441 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 496502 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 496563 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 496624 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 496685 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 496746 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 496807 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 496868 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 496929 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 496990 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 497051 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 497112 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 497173 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 497234 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 497295 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 497356 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 497417 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 497478 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 497539 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 497600 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 497661 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 497722 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 497783 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 497844 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 497905 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 497966 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 498027 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 498089 29 96.6 0 ............T................ | A [498116] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //