Array 1 707265-705698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNL010000001.1 Streptomyces sp. RG38 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 707264 28 100.0 33 ............................ GGCCATCGACGTAGCGACCGACCGTGTCTTCAA 707203 28 100.0 33 ............................ GTCCATCACCCTGCCGCCCGGCAAGTGGACCGC 707142 28 100.0 33 ............................ GCAACTCGCCCCGTTCGGCAAGGGCCTCGTCGG 707081 28 100.0 33 ............................ ACCGAAGCCCCGGGGGCCGACCACCACGAAAAC 707020 28 100.0 33 ............................ GACGGATGAGCTTCTTGCGCTCGGGGGTGGGGT 706959 28 100.0 33 ............................ GAGGCAGCTCCTGACGGGAGCGGGTGCCCGCGC 706898 28 100.0 33 ............................ GGAGTTCTTCAAGCGGCTCATCGACCGCATGTC 706837 28 100.0 33 ............................ GCCTCCCTCTGGGAGTTTTCAACTGGCACAGGG 706776 28 100.0 33 ............................ GGCGCCGCGCTCGATGATGTCGCCCTGCAGGTC 706715 28 100.0 33 ............................ GACGGCTGCGGTGAAGTTGACCGCGCCGACCGG 706654 28 100.0 33 ............................ GTTTCTTCGCCCCGTATCCGAGCGTCTCCTCGT 706593 28 100.0 33 ............................ GCTCCCAGGTCGACATCGTCCAGGCCGTCGGCC 706532 28 100.0 33 ............................ GCCCCGCCCAACATCTTCGGGTACACGGCGGTC 706471 28 100.0 33 ............................ GGGATTCCCCAAGTCCCCGCAAGTCCCCGCATC 706410 28 100.0 33 ............................ CCGTTCTCTCCCTCTCCGTCGGACACCGGAAGC 706349 28 100.0 33 ............................ GGCCACCGGCATGACCGATGCCGAGGCCCGCCA 706288 28 100.0 33 ............................ GGGCCGGAACGTAGTCCAGGGCCTGTGGTCCGG 706227 28 100.0 33 ............................ GTCGCTGACCGAGCCGAGGTCCAGGCCGCCGTA 706166 28 96.4 33 .................T.......... GGCGACCCGTGGGCCACCAACACCCAACAGCAC 706105 28 92.9 33 ..A........A................ GTGGCGCTGGGTCAGGATGCCGGCTTCCAGGCA 706044 28 100.0 33 ............................ GATGCACGAGCTGGCCAAGGCCACCGGCATGAC 705983 28 92.9 33 ......T.........C........... GGCGACGGCGACCTTGCCGACGCCGGGCTCGCC 705922 28 96.4 33 ........................C... GTTCTGCGTCCTGTGCCTGTCCGGTGAGCACGA 705861 28 100.0 45 ............................ GGCGGACGAGAAGGGCGCCCTCACGGCGCTGGCCGGAGCCGAACG TG [705835] 705786 28 100.0 33 ............................ GTGGCTCCAGGAGTCGATGATCAGGACGACGAG 705725 28 96.4 0 ........................C... | ========== ====== ====== ====== ============================ ============================================= ================== 26 28 99.0 34 GTCTTCCCCACGTGCGTGGGGGTGTTCC # Left flank : CGACGAGAAGGGCTGAGCCACGGCACCAACGTCACCGGCTCCCACATGATCGAGGCGTACATGCGCCGCAGCACACGGAAGCCGTCTCTTTGAGACGCCTCCCAGGCAGGCTAGGCCGACATCGCGGCCACAGCCGATCACTACCGGTCACACGGCCGTCCACGATCCCGCCAAGCTCCTCCCGGACGTCGGGGGCTGCCTCACCGATGTCGCCATGCTCCGGGCTGAGCCCACTCCGTTCGGGCCGGTGTCCTCAGACCCGACCGTCTCCCGACTGATCGGAACGCTCGCCGCCGCAGGCAAGAAGGCTCTGGACGCTGTCCGCCGTGGACCGAGTCGACGGGGGAACTCCTCGCAATCCAAGCACACCCACTGACAACACCTCCACGCCCGCTGAGCCCGACTAAAGTCGCCAACATGACCCAACCACTCCAGCACCTCAGAGCCACCCCCTCCGTAAAGAAACAGCAAAGGCCCCGCTGAACAGCAGGTCAGGAAGA # Right flank : GTCGAGGCAGTTGCCGTTCCGGTTCCACACCGCCTACCGGGAGGCGCCGTCACTGCGGTGGGGGCACGCCCTGGACAGGGCGTTGAACGCCTCCCGGGACAACGTGCCTGCTCTGCGGGGGCGGACGCTCATCCTGATCGACACCTCCAGGTCCATGCGCGACGTGCTGTCCAGGGACAGCAGCGTGCGCCGCTGGGACGTCGCCACGCTGTTCGGCGTGGCCCTCGCCCACCGGTGTGACCCGGCGCACGTGGTGTCGTACTCCGCGGCGGGGTGGAACGTCCGCCGGCGCACAAAGGCGTTTCCGATGGTGCGGGGTGAGTCGGTGCTGCGCAGCATCGAGAGGTGGGAGCGGGACGGCTTCTTCCTCGGCGGCGGCACGGAAACGGCCATGGCGCTGCGGGACACGTTCGACGGGCATGACCGCGTCGTCATCGTCACCGACGAGCAGACGGCAGACTCGGGCGCCGCGACGCAGATCCCGGCTTCTGTGCCCCTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 152678-153315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNL010000011.1 Streptomyces sp. RG38 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152678 28 100.0 33 ............................ GGTGTCGAGAGGTGAGGCGCAGGGTGGTTGCAC 152739 28 100.0 33 ............................ GCTGGTGCACGGCGCTGCCTCCCCGGTCGCGTC 152800 28 100.0 33 ............................ GTTGGCCGCGCACGCCCGGTTGTTCAACTCCTT 152861 28 100.0 33 ............................ GACGGTCGGCCGGTGGCTCACGCGGGTGGGACG 152922 28 100.0 33 ............................ ATCGATCAGATCGCAGCGCACGTAGGTGGCGGC 152983 28 100.0 33 ............................ GGTGCTGCCGGTCGTCTCCGACCTCGCCGCGAG 153044 28 100.0 33 ............................ GTGGCTCGGGCCGGTTTGCAAGTTACGGCGGCG 153105 28 100.0 33 ............................ GAACACGATGGTCGCGCACGAACTGCGGGTGCG 153166 28 96.4 33 ...........T................ GTCGATCACGTTCAGCCAGTCCCGGACACTGCC 153227 28 100.0 33 ............................ TGCCGATAGTTCCGTACATGGGTGATGAGTCCC 153288 28 92.9 0 A..............A............ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 33 GTCTTCCCCACGTGCGTGGGGGTGTTCC # Left flank : GTGGTCCGCCGACACACCGTCGGTCATGGAGCTGGGCAACGCCTTCGCCCCGATACCCCTCGCGGACCCGCCCCGCCTCGACTTCTGGCAACGGTTCTTCCTGACCCAACAGGCATGGTGACGCCCACCGACGACACCGAAGACACCGAAAGCACCGGAGGCCGCTGACCGGACGCTCGCAGCCTCCCTCCAGCCCAGCCCAGCCCGTCCCGCATCCCCGCAAGATCGCCCCACCTGGCCAACCGACCCGAACCCGAACAGCAGCACCGTCCAAGACCGCCGTACACACCAGGCCGGAGAGCCCCTCCCCCACACACCACCAGCCAGCCCGCCGGACCGGCACCCCCGCCCCGGCGGGGAGGACGGCGCCTACCACTGACAACACCCCGAACCGCAAACGCGACTAAAGTGATCGACGTGAACCAACCACTCCAGCGTCCCAGGACCACCACCACTGCAAAGAAACAACAAACCCCCCGCTAAACAGCAGGTCAGAAAGG # Right flank : CGCACATCGCGGCCGGGAGCGCGGCCTCCCGGCCTCATCATTCGCGGCCTCCTCCCGACGGGCCGCTTGTCCCGACGGTCGCCTTGGAGGTGCCGGACGGCCACCGGTGTCCGCCGCGTGCCACCCCGTCCGGTGTCACTCCGGCCGCCCGAAGCGGTGGGCGGCCCAGAGCAGGGCGGCGGCACCCGTCACCAGGAGGGCGGCGGCTTCCAGCGGGAGGGGAGGCTGCCCGCCGAACCATTCGATGCCCGTCGCGGCCGTATGACCGGGCACCTGGAGCTCGATGCTCCGCCGGAGCAGATCCACGCCGTAGGCGAGCGGGTTGACGGCGGCCAGTGCCTGCGCCCAGCCCGGCAGGGCGTGCAGAGGGAAGAAGCCGCCGGAGAGGAACAGCAGCGGCATCATCACCAAGCCCAGCAGCATGTGGAACACCTCGGGGCGGCCCAGGGTCACGGCGAGGGCCAGGGACAGAGCCGTGATGGTGAAGGAGGCGAGGATCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202846-203118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPNL010000002.1 Streptomyces sp. RG38 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202846 29 100.0 32 ............................. CAGCGCATGAGCACGTTCGGAGGCTTGCTCCG 202907 29 100.0 32 ............................. CTGTGTGCGGGCAGCCGGTCATACTCCGAGGG 202968 29 100.0 32 ............................. GGGGGTGTACTGCCCACTACTAGGGGTATGGT 203029 29 100.0 32 ............................. ACCTCCGGCGCCATCCCCTACATTTTCCGGGA 203090 29 93.1 0 ..............A........C..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GCGAGTGAGATAGCTGCTGACCTGCGGGAATGAAGGTGGCCTACTTGACGGTCGGCGGGCGCCTCGTCCGGCAGGCGATGCCTTGCCGGCCCGTACAGGACCTGTGCGGGATCAAGCCCTGGAGGTCTTCGCCCAGCGACGAGCCGCGCACACTGAGCTTTGGTTGTCTTCCCGCAGGCCAATGCGGACAGCACCCCGATCTCTCAGGGCAAGACGCTCTCAAAGCAGGAGACCCTGGATCTCCTCCTGGCATGCCCGGGGTGGCGTGATAGCGGGCGAACGCCGGTCTGACCGTGGCAATAGACCTGCTGCAACAGCTCAGGGAAAGTAGCTCATTGCGGCTGGCCTGCGCGAGGGGCGCCGACCTGGCGCAGGGGCGTCAGGCGTTGACGCTTCGGCAGAGGCTGATGTCCATCAAGCAATCTGTGCCCCATTTGCCGGAATCGAAGAAAGTGCGCGGAAAACGCCCCTGACGGCAGTAAACTCGCAGGCCATCCAGC # Right flank : CGGTGACGTGGACGTCGACCGGCACCGGCGGAGCCGTTCTCAGAGCCCGCATGTTCACCGAGTCGATCGCGTACCTCGACCAGTACAGGTCGCCACGGGGGCCGAGTTCGTCGAGGACCAGGCGGTGGAGCTAGGCGCACACCCTGGCCTTCGTCCACTCGGTGAACCGGCGGGGGGTCGTCGCACCGGACGGCCCGAACGACGCCGAGGGCAACTGCTGCCACGTGCAGCCCGACGTTGCCACGAACACGATCGCCGCCAGGGCCTCCCGGTCACCATGGCGGCGCCGGCCACCACCCTGAGGCCGCGACGGCGCCTCCGGCACCACACGCTGGAACAGCTCCCACAACTCGTCCGGAACCAGCCACTCAACAATCCCCGCCACAGCCAACAGTCCACCCAGCCAAAGGAGATGGATTGCAAGGAGGACGGATGCCGTCGCCGGTTCCGCACCGGTGATTGTGGCGATCCGGACGATGCTGAGCCGCAGCTCGTCGTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //