Array 1 136162-138510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFMP010000006.1 Veillonella parvula isolate Veillonella_parvula_BgEED39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 136162 35 100.0 44 ................................... GTAGAAGCGGATATGCAAGCGTTATTAAAGAAGAACGAAGAGGC 136241 35 100.0 43 ................................... GTGCATTAACCGTTAATACTAACGTAATATCACCAGTTTTTTT 136319 35 100.0 39 ................................... TTTTTTGTTCTTTTTCTGCTTCTAATTCCACAGTAGAAA 136393 35 100.0 39 ................................... TTTTCAACAATAAGGATAATAGTTGTTGTTCCTCGTCGG 136467 35 100.0 44 ................................... TAGCCATTTTAAGTACCTCGCTTTTTAATAAAAATTAAAGTTAA 136546 35 100.0 43 ................................... CCGGCATTATCAATCGCTATATCAGAGATAAAATCGGCGGTGT 136624 35 100.0 43 ................................... CAAATTCATCCATCAGATATGATGCTTCATCGAGTTCGTTCTT 136702 35 100.0 42 ................................... AGGTATTCAAAATGAGAATTGTTGTTAATAAATATGAAAATC 136779 35 100.0 43 ................................... TCGAGTAAATCATACTTTAACTCTTTTAAAAACTTGCGTTCTA 136857 35 100.0 42 ................................... AATTAATTCTCGATTGATAAATACTTTCATTGTTTTTACCTC 136934 35 100.0 44 ................................... ATCCATACTGCACTCCTTTCAATAAAAAATACAGGATATACCTA 137013 35 100.0 45 ................................... TCTATCCTCCTTTTCCGTAACGGTTAAACCGTAATTCACTACAAA 137093 35 100.0 39 ................................... TTGAGGATTATCCTGAGTATGATCATGCTGAGGGTTCTC 137167 35 100.0 43 ................................... AACTTAAATACATTTTTATTTTCTGTAGCTTTTACAGTTGTAT 137245 35 100.0 44 ................................... TTTTTTCAACAATTCTTTTTCAGAGTCGTTTTTACTTTTAGCCT 137324 35 100.0 44 ................................... TTGAATATCGTGGGTACTTTCAATAGTATCTCTTAACCTTTCAA 137403 35 100.0 42 ................................... TCTGTTGCTAACATAAAACACTAGAAAAGTTTTACCGTTAAT 137480 35 100.0 43 ................................... TAGTTTCAATAGATTTTTTTGTTACGCTCATGATATATACCAT 137558 35 100.0 38 ................................... ATAAGTTATTTAGACATTTTTTTTAAAAGTAATTGTAG 137631 35 100.0 41 ................................... GCATACTAAGCCGTCATCGGAATGAAATTCCATAACGCCTG 137707 35 100.0 43 ................................... TTTCAATTAAATCTATAGCGTTCCATTCTTCTTGAATTGCAAA 137785 35 100.0 41 ................................... TAATTGTATACCGTCAACAGTTTGCAACTGTTATTATTCTT 137861 35 100.0 42 ................................... GAACTTAACTCATTCCGACATACTCGATAATCTAGCTCGGTC 137938 35 100.0 43 ................................... CGCTTTACATTTTCTAATTCAAATGAATTAATTTTGATTGATT 138016 35 85.7 38 .......T...........ATTA............ TGCCAAGCATAGGCAAACGGAAATTTACCTATTGCGAG 138089 35 82.9 44 .......T...........ATTA...........A TTATTTCTTTCTTCAACTTCTTTCATGTTCTTAATTATTTGTTG 138168 35 85.7 42 .......T...........ATTA............ GACTGAGAACCCTGTGCACGTTTTGCTGTTGCTATATGCATT 138245 35 91.4 42 .......T.................AA........ AATGATTAGCGTTCTTAACATGGAAATCTTTTGTATTAATAC 138322 35 97.1 40 .......T........................... GAATTAAAAACTCGCCTTATAGAGCGTTTTAATCAATTTC 138397 34 88.6 43 .......T....G.......T.-............ GGGAATAAATCCCATAAAGCCTCAGTATAGATAGAAGCGAATA A [138416] 138475 34 80.0 0 .......TT.T.......A.T.-.......T.... | G,T [138493,138509] ========== ====== ====== ====== =================================== ============================================= ================== 31 35 97.1 42 GTTAAATAAAATAATCCCCTGATGGGGACGGAAAC # Left flank : TGTCAAACACAAACTGAACGAAGCGATGCTAGAACACTGCAACTATGTGCGCAAAATGCTAGCCCGCATCAAACTCAGCCAAAACCCTCAAGTCGTGGCCGAACTATTTATCGCCTGGAGAGACCTAACGAGATAACTCGTTGGACGGTGAAAGTAGAAATAGGAGGGTGGAGAGAAATTTGGAAAAGGAGGATAGGCATATAAGAAAATAAACGAAACTGCGGGAGCAGATGAACTATTGAAAATAAGTTACATATGGCACCTCAATAGAGCTACCTTATATAAGGTGGCTCTATTTTCATATGTTTTTCATTAATGTTAGTGATGTGCTATAATAGACCTAGATTTAATCTTTGCAAAACTAAATCTGCGCCGTTGTGATAGTGGCGCGGTTAAATGGCATTATTTTAGCTCGCTAAAGTGCCTTTTGGGGTGGATTTACAATCTCCGCCGTTTTTTGCATTTTGGAACTAGTAAATATCTGTTGTTTCAAAGACAGG # Right flank : CCCTTATCTTTTAATAAAGCCATGAGCATTGCGTTTTGTTGAGATTACATAAATAACCCCTTAGGGGCCAGAGAAAATGAATATTTAGTTTCAAAGAAAAATAACCACTCTTGTATAGGGTGGTTATTTTATGTATAAATTATTTTGCTTTTAGAGAGTCAAATGAATTTAAAGTGTTGATCTTCATCTTATTTTTATGATCTAATAGAGATAAGTTAAACTAAATTTTGGTATGGGGAGGATATCATGGCTGAAATTACGTCCTTAATGAAGGATATTAAGGGGATATTAGATAATAAAAATCAATTTGTTATACCTGATTTTCAACGGAGTTTTGTATGGACAGATAAAGATGTAGATACACTTTTTTCTGATTTTAAGGAAGATACAGATAATTACACGGATAGGCTTGATACGTTGCCAGGGTATTTATTAGGCAATATTGTTTTGATTAGCAATGAAAATAATCCGACTAGATTTGATGTGATTGATGGTCAGCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATAAAATAATCCCCTGATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 151805-153470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFMP010000006.1 Veillonella parvula isolate Veillonella_parvula_BgEED39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 151805 34 100.0 43 .................................. GTGATTTTCTAGCCTCGTACAACGCTTTTTTGAGTTGATAATT 151882 34 100.0 44 .................................. GAAATACACAACAGTTAAAGCCATGTTTACGTTCTAACGCTTGT 151960 34 100.0 44 .................................. GTCAATATTAGCCAAGAGATAAGGGTACTCCTCAGATTGCAATG 152038 34 100.0 44 .................................. GCATTTTTAGATAGTGCTTTCAAGCGTTTATCATCCTCTTGAGC 152116 34 100.0 42 .................................. GTGCAATGGAATTTTTAGAATTATTAGAGTATGCACGACAAT 152192 34 100.0 44 .................................. GAAGATGTGTTCTGTGATTTAGATTATAAAACAGAAAATATCTT 152270 34 100.0 41 .................................. CTTAAAAGCCATGTTTGTATCTGACTTCGTTTTTCTTTCAA 152345 34 100.0 43 .................................. CAAATCCTCGCATTCATCAGGAATGCAGTAGTCTCGCTTTGGA 152422 34 100.0 45 .................................. CTCCCAGTACGTGCAAATACGAATACGTTTTGTGGGTTAGTATTC 152501 34 100.0 42 .................................. CTAAAATACTTAGCCAATCCTATAGCATCTTCGGCTTCACCT 152577 34 97.1 44 ....................A............. CTGTTTGTTTTGTACTAGCATGTTTCATCTCCTTTTCTCTACTT 152655 34 85.3 44 ...................ATTA....G...... CAGTTCCAAGTTTGGTTTGCGTTTAAATCTTTTAGTGTGTACAT 152733 34 100.0 43 .................................. CCATATTATCTTTGATGCCTTTTGGTAATTCAATAAATGTTTT 152810 34 88.2 42 ...................ATTA........... CTAGCCGTTACAATCAATTCAAGATCATTCAACTTCATCACT 152886 34 88.2 45 ...................ATTA........... CATCAAGTTCACTAAATGGAACATTATCTACACAATGTTGAATTT 152965 34 97.1 45 ....................A............. CTCAAATTTATCTACATGCACTAGTGTCTGCTGCGGCCCCAACTG 153044 34 94.1 45 ......C...........T............... CATTTATTTCTCCTTGTGTTAAAATACAAGTAGAGTATTTTCCAA 153123 34 85.3 44 ...................AC......G.C...G CTACTTTCCAGTACATGTTATATATTAAAATTTGCTAGTGAATG TA [153146] 153203 33 91.2 43 A...................T.-........... CTATATTTCTCGGATAGAATAGTGGAGTCCGAAGAAATTGATA A [153221] 153280 33 91.2 45 .......A............T.-........... CGCCATATAGTGCTGACACTGGATGTAATAGGCATCAGGGACACT A [153299] 153359 33 94.1 44 ....................T.-........... CAGTTCGACATTTCTGACAAGGTAACTTCTTGCCTCACTAAGGC A [153378] 153437 34 85.3 0 ..................T.TTA......A.... | ========== ====== ====== ====== ================================== ============================================= ================== 22 34 95.3 44 GTTAAATTAAATAATCCCCTGATGGGGACGGAAA # Left flank : GTCCAAAAGTCTGCGTTTGAAGCATTGCTTAATAGGAAACAATATGATGCTATGATGCGGCGAGCTAGTAAGATGATTAATCCTATAGAGGACTCCTTACGAGTCTATGTCCTTGATGACATTATAAATATCTATACTTGGGGTATTGGAGAACGTAAGGAACAAGACTGTATCGTACTTTAAATATAAATAGTTACTCTCGATTAATACTGTTACGATGTAGAGGTGTAATTAATAATAATAGAATCATTAATATTGGTAAAAGTATTTCAGAGCTTGATGTTTTGTATTGATGATTCTATTATTGTATTATCTATTTTCTTATATGATATAATGGGTCTAGAATTTAACTCCTGAGAAATTAAATCTGCGCCGTTGTGATAGTGGTGCGGTTTAACGATGTTATTTTAACTTGCTAAAGTGCTTTTTGAGATTAATTTGTAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAAAGACAGG # Right flank : AGGCACTACCTTATTATTGTAGGTAGTGCCTTATGTATAATCTAAGGGTTTAATTGTTTTGTATTATAAATACTTAAGGTTTTGTTACTTTCTCTCTTAAAATGAAGGGTGGATTATTGAAGTAAAATAAGTGATATTTATAATATATAATATATTAAGTAACTATAAGTAACTATATTTATTATTTAGTGTGTATGGGATTGGAGAGCTTTTAAAGGATAAATATCATTTGCCATTTTCTATTGGTCATGGTGAATTTATTTTCTTTCGTGGTAACGAGGTTTTACTCACTATTTATAACTGATTATTGTCATTGTTTTGGGATCCCTAGTATCCTTTATTTGCCTTACAAAAAAACAAATAGCCCTCCGTTACCGCATGGTAGCTAGGTAAACAGAAAGTCCATTTTCTAAGATTTCATTATCTTCGAGATGCGCTTGATATTTCGACTCGTCTGACTATCTTTTAATATGATAGAGATAAAGGTATATCATCCAATT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //