Array 1 1029511-1031065 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081813.1 Shigella flexneri strain WW1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1029511 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 1029572 29 100.0 32 ............................. GCTTCCTCCGGAGTAGTGGCAATCACATCAAA 1029633 29 100.0 32 ............................. TGATTTATCTGGAAGACTTTACTACTAACAGT 1029694 29 100.0 32 ............................. GTGGTAAGAAGTGGATCTTTAACATCATCGGT 1029755 29 100.0 32 ............................. CCTGGCTACGGCAGGCGTTAATTAATAATCCG 1029816 29 100.0 32 ............................. CAATTTTGGCAAGTTGCGATACCCAGGAACAA 1029877 29 100.0 32 ............................. AATGCGTGTCTGCCGCTGCTGAGTTTTGCTGG 1029938 29 100.0 33 ............................. CATTCATTACCGAAAATGATATAGGTCAATGAA 1030000 29 100.0 32 ............................. ATCCGCAACAGTGATGTAACGCTGATTACTGA 1030061 29 100.0 32 ............................. GAAATTTCGGAAATTAAATCCGCTCGCGATCG 1030122 29 100.0 32 ............................. ACGGTCCACGGCTCACAGGATCCGTGTGTAAA 1030183 29 100.0 32 ............................. AGCATCTTCAATAGTGATTTTGATACCCTCGG 1030244 29 100.0 32 ............................. TATTAAATGTTAAATATTCCGACCCGCCTCAC 1030305 29 100.0 32 ............................. CCCCCAACGACTAAACGCAGCCTCGATTGCCA 1030366 29 100.0 32 ............................. CGTTCTTCAAACGCCACCTGGTCAGTGAGTGC 1030427 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 1030488 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1030549 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1030610 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1030671 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1030732 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1030793 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1030854 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1030915 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1030976 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1031037 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATATAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1058028-1060620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081813.1 Shigella flexneri strain WW1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1058028 29 100.0 32 ............................. ACCAGATCGCACTGACTGATAATGGTGAACAA 1058089 29 100.0 32 ............................. TTTACGCCTATTTTTGCATAAGGTGAGCCAGC 1058150 29 100.0 32 ............................. CTCGGGCTGCACATTGACAACGTAGATCCGCC 1058211 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCTGTCA 1058272 29 100.0 32 ............................. TCGAGACTAGCAACACGATTCGATGCGGTGAG 1058333 29 100.0 32 ............................. CGTCTGCTTTCGTTGGTGTGGTTGTCCGTGCA 1058394 29 100.0 32 ............................. CGCGCGGGCAGCTCCCTCCGCTCCCTCCTGCG 1058455 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 1058517 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 1058578 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 1058639 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 1058700 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 1058761 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 1058822 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 1058883 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 1058944 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 1059005 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 1059066 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 1059127 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 1059188 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 1059249 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 1059311 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 1059372 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 1059433 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 1059494 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 1059555 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 1059616 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 1059677 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 1059738 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 1059799 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 1059860 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 1059921 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 1059982 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 1060043 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 1060104 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1060165 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1060226 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1060287 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1060348 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1060409 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1060470 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1060531 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1060592 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGCTGATTTTGCTGTTTACTGCGCCAGTTGTAGAGCTGTGATTCATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //