Array 1 12473-14668 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFO01000024.1 Secundilactobacillus malefermentans strain ATCC 49373 453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 12473 33 100.0 35 ................................. AGTAATTGACCCAACTGTTTGTACACCTGCTCCAA 12541 33 100.0 36 ................................. ATCTGTGTAACAGCTAGGATACCCAACGCATCTAGC 12610 33 100.0 36 ................................. CTGATGATACTGTTGTTTTAATGCCAGACGGTGCAA 12679 33 100.0 34 ................................. TAAAGACTTCCTCAACGTGATTGGTAAAGTCGGT 12746 33 100.0 34 ................................. ATGACAAACGAACCAGTTAATCCAGAAGTAGACC 12813 33 100.0 33 ................................. AATCAGTAACAACCTAATGAGTCAGTTGTACAA 12879 33 100.0 33 ................................. AATCCGTTTGGCAGGCTATTGATACAGCGGTGA 12945 33 100.0 33 ................................. AGGACAGGAAATGCTATTTCAGGAGTTGACGAC 13011 33 100.0 34 ................................. AAAAGTCATTCAAAAGTGTTAATGCTGTCACCAA 13078 33 100.0 36 ................................. TCATGAATCAGGCTGGAATCCTAAAGCTACCAACTC 13147 33 100.0 35 ................................. ACAACTTCCAACGACTGGAAATCAAGAAGGATATT 13215 33 100.0 34 ................................. AACTGATATGAATACTGTTTTAACTGATGGGTTT 13282 33 100.0 34 ................................. TTGTGTCCTTTAACCGCATAAGAACTGAAAGTAC 13349 33 100.0 37 ................................. AAAGAAATTACAGATGTGTTCAATTGGCTTAATAATG 13419 33 100.0 33 ................................. ATATAATCCATCACTTGCTAGATGAATTATACG 13485 33 100.0 33 ................................. AGGCTACCAAGTCTAAACATTATCGTTATGGCC 13551 33 100.0 36 ................................. AATTAATGTTGGGGCTTCAGTTATTGAAGGGCAGAC 13620 33 100.0 35 ................................. TAGGAGGCTTTAAGGAGTTGACAGACTCACTAGAC 13688 33 100.0 34 ................................. TCATACCCTTGACGATTACGAGGAATTGCTTGTG 13755 33 100.0 34 ................................. TTGTGTCCTTTAACCGCATAAGAACTGAAAGTAC 13822 33 100.0 35 ................................. CCAATTACCAACAACTGGAAATCAGGAAGGGTACT 13890 33 100.0 34 ................................. AAAGTATTTGATACCGTTGGGGTTTACCATTTCT 13957 33 100.0 35 ................................. GACCACTTCTTCTTAAACGATACGACCGCATTCCC 14025 33 97.0 36 ..T.............................. AATATCAAATTCAGCAACTGAACTATGACCCGGCGT 14094 33 100.0 35 ................................. GGTAATTTATTCATCAAGTTATTGCTTTTATCTAC 14162 33 100.0 35 ................................. TAGATTAATTGATATAGTAATTGGATTACCTGAAT 14230 33 100.0 36 ................................. ATCAAGTAATTAAGCAACAAAAAACTAACCCTATCA 14299 33 100.0 34 ................................. GCAAAACCTTAGCCCAGAAAACGGCTGGCGGCGG 14366 33 100.0 34 ................................. GTGTCACCTGTGTACTTACTGTCACCGCTAAACT 14433 33 100.0 34 ................................. CTACTGCCTGCGTTAGGGTTGCTGCCGTATAACC 14500 33 100.0 34 ................................. CTGACTAGTTCCACTCAATTCTGGAATCGCCCGT 14567 33 100.0 35 ................................. ATCTTGTGGTCTTGCATATCTTGAGTTGCATTGGA 14635 33 100.0 0 ................................. | T [14648] ========== ====== ====== ====== ================================= ===================================== ================== 33 33 99.9 35 GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Left flank : TTCTCTACGGCACCGAATACGGTAGCAAATTATTTCCGTGTTATTGACTCAGAAACCACAAACGTTATCGTTCAATATAACACTGAAAGTATTCGTCTAGTTAGTGAGTTAATTTCAGAAAAAAGTAAATTTGAGAACATTTCAAAACTATTAAAGAAGGCTCAACCATATTGTGTTTCAGTATTTGGTGATCCAAATAATTCTAGAAGTGCGCTTGGTCAATTGCTGAGTACAGGCGATGTGCAATTTTATCCAGAGCAGGGTATATATGTAGCAGCTGATAACGCCTACAGTAAAGATTTAGGATTAGTGGGAACTGGAAATTTTGATTATTTAGACTATTAGTGCGAATACGAAGTACACATACTTTCTTTGGCTAATTCGCACCATAAAATTCAATAATTTTGATCAATTTTCTTAAAAGCTACTCTTTGTTTCATATGTTTCTGTACCGCCGCATATATGTAGTGTTTTATAGACGTATAGCACTATATATTGCG # Right flank : TAATTCAATTCGGTAAGTTGAATGCGGCTTAAAATTGTCACACTCTGTATGATAACTGCACTTGCATATTCAAATATATATATCACACTCTAATCTAAATCAGTATAATTCATCAAAGACTATTCCTACTGGTTTATATATTCTTGGCATATCGTAATGAAAACGTTTACACCGATGCATCTACTTGCTACTATTGAACTAACTACTAAGACAGTGAGATGATTCTCAATGGAATATAATGAAGACGATTTTCTAATGATTTCGGGAATCCAACATTTTCGTTTTTGCTCCCGCCAATGGGCTCTTATTCATATTGAGCAGGCGTGGAAGGATAACTTACTGACTTTTGATGGTCAAACTTTGCATACAAAAGCTGATCAACCACAAATTCGTGAAAAAAGAAAAGATAAGCTAATTGTTAGATCTCTTCCAGTTCATTCTAGGGAACTTGGACTTACTGGTATTTGTGATGTTGTTGAGTTCACAGAATCAAAATCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //