Array 1 317384-319191 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWC01000002.1 Salinivibrio sp. VYel7 NODE_2_length_588681_cov_104.718350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 317384 28 100.0 32 ............................ AATACGCCAGAGGCCAGCGCCGCCGCCGTCAA 317444 28 100.0 32 ............................ TCAAGCGAGTTGATAAAAATCCTATACTACCT 317504 28 100.0 32 ............................ GCTGCCACCTGTGGCGATTGACGAGATGGCCA 317564 28 100.0 32 ............................ GCGAGGGTGAGCCATTTAAGGAAACCTATCAG 317624 28 100.0 32 ............................ GCTAACGGTAACGCAATCGAGGTCGCCAACTT 317684 28 100.0 32 ............................ CAACCGTGTTCGTTACGTGCTTTTTGTTTATC 317744 28 100.0 32 ............................ GGATTTGCGGATAAGATGACGCAATTCTCGGA 317804 28 100.0 32 ............................ ATATCGCTATGGAAAGACCGCTCAAGGATGTA 317864 28 100.0 32 ............................ AAAGCGCAAGCGAAACGCTTGCAGGAAGTCGC 317924 28 96.4 32 ....T....................... TAGATAAGAGATAAAGGTCCGTGCGTACGATG 317984 28 85.7 146 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTT 318158 27 89.3 32 ....T..-A................... AATTCGGCTGGCCGTCGATGTTAGCCATGATG A [318160] 318218 28 100.0 32 ............................ AGAAGATAACCGCACACCAGAGCCAGCACAAA 318278 28 92.9 32 ...........T.T.............. TGCCAGCGTTTTTTGTGTGCGCTTGTATTCCG 318338 28 92.9 32 ...........T.T.............. TTGCGAGGGGCCAGCACTTCGTCACGGATTTG 318398 28 92.9 32 ...........T.T.............. GCTCGGGCGGGTTTTTTATTGCTTGCGGTGTT 318458 28 92.9 32 ...........T.T.............. ATCAAAAAATCAAGCAGATTCAAGACGCCGGT 318518 28 96.4 32 .............T.............. CGCAACTAGCCGAGGGCGAAACGCCAGCGGCT 318578 28 92.9 32 ....T........T.............. TGAGTCAAATTGCTTCATTCCTCGGATTGTTT 318638 28 96.4 32 ...........T................ GTCAGCAACACGCCTCACCGCGTTTTAGTTGT 318698 28 100.0 32 ............................ GACGCACGGGCGCATGAAATACCAATCTATTC 318758 28 100.0 32 ............................ AATCCAAATCATCGGGGTCTAGGTCGAACAGG 318818 28 100.0 32 ............................ TTTTCCACATAGTAGAAATCAAATCTCAAGCC 318878 28 100.0 32 ............................ TAAAGCCAACGGTTAAAACCGACCTGAATGCT 318938 28 100.0 33 ............................ AGTTGAAACCGCGGTATCGAGCGCGATCACGCC 318999 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCAATGGCGCTT 319163 28 67.9 0 ..C...CTA.......A....G...GTG | G [319167] ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 27 28 95.5 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCTTTGAACGCAGGGCCGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCATTGAAGTTGGATACATAAAACCCCTTTGTAACCCTTCTTTTGGGGAGGTTTAAAAATAATCATTAAATACAAAGAGTTGTGGAAGGCCATTTTAAACAAGGGTAAAAGAGCATTTTTATCCTAACAGCCTGTTGTTCCGAGCTATTATTACGTTATTCTATT # Right flank : GACACAAGCCCCAGCACTATGTTGGATAGGTGACATTGCTAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACTGTCGATGAGCCGGTAAACTTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGCAGCGATG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 321115-321982 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWC01000002.1 Salinivibrio sp. VYel7 NODE_2_length_588681_cov_104.718350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 321115 28 100.0 32 ............................ TCCCAGCCGTGGCCGTGAAAAGCCTGCCGTCA 321175 28 100.0 32 ............................ TCAGTCGCAGAAACTAAACACAGTTTTGAAGC 321235 28 100.0 32 ............................ GGAACACTAAACACCGAAAAACACGCAAAAAA 321295 28 100.0 32 ............................ TCTAGTGTCAGCAAGTGCGCGATCAAGTTAAG 321355 28 100.0 32 ............................ TATGAAGAAGTGCGGCAGAAAGCGGAACAGGC 321415 28 100.0 32 ............................ TGCGCGTCACGCCTTACGTGTTCAACAAAGAC 321475 28 100.0 32 ............................ GCAAACTGTTTGCACTGATGCAGGACTATGCA 321535 28 100.0 32 ............................ TAGCGGTTTCACTCCTTTGGCCACTTGCTTGT 321595 28 100.0 32 ............................ CGCTCAAATCACACAGGCACTCAGACATTGAG 321655 28 100.0 32 ............................ AGCAACGTAAAAAAATCCTGAAGGTTGTGCTT 321715 28 100.0 32 ............................ CAGTGAAAATCACCATCGGCATCATGCTGAAC 321775 28 100.0 32 ............................ AACGGTATCAGCTTTGCTCCGCTCGACGTCAT 321835 28 100.0 32 ............................ GTTAGCGCGAATGACATAGAAGAACACATCAC 321895 28 100.0 32 ............................ TTCAGTCGCAGCGTAGTACCGTGTGATGTTCG 321955 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCTACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTGCGTGATCATTGGAAAGCCCTGCACGAGAACTTCACCATTGATTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGACTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGACTATTAAGTTATTCTATT # Right flank : GACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 332760-333733 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWC01000002.1 Salinivibrio sp. VYel7 NODE_2_length_588681_cov_104.718350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 332760 28 100.0 32 ............................ TTGTTGCTTTAAAGTCCTTAACTAATCGCTTA 332820 28 100.0 32 ............................ AACATCCAGGGCAAAACCCTCGACCAGTTTTT 332880 28 100.0 32 ............................ ATCAATATTGCAGGCAGGCCAACCGACTTACG 332940 28 100.0 32 ............................ TCCATTAGCTAGAGGCATAATAGTCTGGTGCT 333000 28 100.0 32 ............................ TGACACATCGTCAACAGGGTCGCCATTGGCGT 333060 28 100.0 32 ............................ AACTACGGGGGGCACATTCCTTTGTTGTTCTT 333120 28 100.0 32 ............................ ATAAGGGTGTCGGCACTCCATACTTGTTTTTT 333180 28 100.0 32 ............................ TCGCCTAGAGCAAGCAGTGGATAGTCTAGCGT 333240 28 100.0 32 ............................ TACAAGACCTTGCTGATATTGTTGACGGCGGT 333300 28 100.0 32 ............................ ACGACTGTATGTTCTGATCGATATCGGCAAGA 333360 28 96.4 32 .............T.............. GCTTAGATGCAGACGATATGGCGAAAGGGGCT 333420 28 92.9 33 .............T....C......... ATCTAATCGCCCCCTCAAGAAACCAAGTCTTTG 333481 28 78.6 136 ...G.........T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTT 333645 28 85.7 32 ..C...CTA................... AAGCTGGATATGGGTGATATTGACGGTCTTAC G [333649] 333706 27 85.7 0 .....................-G...TG | C [333730] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 15 28 96.0 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAAACTCGATCGGCGAGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATAAACCGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTGTTACGTTATTCTATA # Right flank : GACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATTGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCACTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGATCTACGCACAGGCAGCGACGATGACACAAGCCCCAGCACGGTGTTGGATAGGTGCACATTGCTAACGGGCGCCTGTCACGATCGAGGTGAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTACGCACAGGCAGCTTAGAAAAATTCGGCTGGCCGTCGATGTTAGCCATGATGGTTCACTGCCGCATAGGCAGCGTGGGTGACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //