Array 1 341248-340163 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014926.1 Prevotella intermedia strain 17-2 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 341247 36 100.0 29 .................................... TAGCGTTTGCGTCTACGTTTTCCATAGCC 341182 36 100.0 29 .................................... ACATCAACTACAAAGCGATAATCTAATAA 341117 36 100.0 30 .................................... TTCTTAATAGTTCTATTCTTGCTCCTGTAT 341051 36 97.2 30 ....T............................... AATTCTTGATATAGTTCTATTATAGTATCT 340985 36 97.2 30 ....T............................... ACCTTAAGGTCCTTTACGCTCTTAGCACCA 340919 36 97.2 30 ....T............................... ACTCTGGCAAGAACAAGTTCGTAACCATAC 340853 36 97.2 30 ....T............................... CAAGAGTACGTTAGCAATGAAAGTAGTAAG 340787 36 97.2 30 ....T............................... ATTACATGTGGTTAACTCATCTAAGAACAA 340721 36 97.2 28 ....T............................... TTATTTGTTTTGTGGCACAATTGACCTA 340657 36 100.0 29 .................................... TTGTTGGCAATGAGCTCGTTCACTTTACC 340592 36 100.0 30 .................................... GATTTTAATTTTTCCTCAATATTTGTTTCT 340526 36 100.0 30 .................................... TCACTCCAATCTTTAACAGTGTGATAATAA 340460 36 100.0 29 .................................... TCCTTAACAATACGTGAAAGTAGATAAAA 340395 36 100.0 29 .................................... CCTATGGTAATGTACTCTTTTAGAACACA 340330 36 100.0 30 .................................... TCAGCGAGAATTTTAGCTTCAAACTCAGCT 340264 36 97.2 30 ................................T... AGCATTCCAATAGCGGAAGGACTGATTTTT 340198 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.5 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAAATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGCTGCTTACTGCGAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTAGATAATAAGAAGGGGAAAAAATGGTGTTGGAAAAGAAAGAAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCGAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCAATGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAGGTGTAGAGGTTGTGGCGTGGGTTTGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGAAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCATATCGTTATC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGTATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 543314-540350 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014925.1 Prevotella intermedia strain 17-2 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 543313 47 100.0 29 ............................................... ATAAAATTTAAAATTATGCAAACTTTTTT 543237 47 100.0 29 ............................................... GGACAACTTCAAAAAGTTATCTTTCAGCG 543161 47 100.0 30 ............................................... CGCCCTATCGTCATTTCAATGCCACCGAGT 543084 47 100.0 29 ............................................... CAAAAGCGGTCGTAAGGGCTTTTATCCCG 543008 47 100.0 29 ............................................... TGGTGCAACCAAGTGGAGCGTATATTGTA 542932 47 100.0 30 ............................................... TATCAAATACAGGCGCATACTCCTTGTACA 542855 47 100.0 30 ............................................... TTTCTTCAAATAATTTCCTGTGCCTACGTT 542778 47 100.0 29 ............................................... TTTTTCGTTTCGTTCACACGTTGATATTC 542702 47 100.0 30 ............................................... CCTGCTCTACTTGTTGTATAGTTTCGTTCT 542625 47 100.0 30 ............................................... AGGAAAGAATAAACAGTGCTTGGAAATAAT 542548 47 100.0 30 ............................................... CGCCTCAACATTGCCAATATCCTCTCTCTA 542471 47 100.0 30 ............................................... CTTAGGTATGTTAGTTAGTGGTGCTGTTGG 542394 47 100.0 29 ............................................... GGCTATGCGCTCGATGCATATAATACTAA 542318 47 100.0 30 ............................................... CACAGACACATCAATAATAGTAACTTTCTC 542241 47 100.0 30 ............................................... GCGGGTGCAGCACTTGCCTACTTATACACA 542164 47 100.0 30 ............................................... TTGAAAATTATTGACATTAAAGGAAAGGGC 542087 47 100.0 30 ............................................... ATTTAATCTAAAAACTTTCATATTTATTTA 542010 47 100.0 30 ............................................... CACGTGTAACGATAGCACAGTTTCCGTCCT 541933 47 100.0 30 ............................................... CTGCCACCGTAACAACGTTTGAGCCATTAA 541856 47 100.0 30 ............................................... AATAAACTGTAATACTTCTTTTAGGTCTAC 541779 47 100.0 30 ............................................... TATACGACCAAATATTGAAGCAGAACCTTA 541702 47 100.0 30 ............................................... TGACGCTATGGGTTACGAACTTACCCCAAT 541625 47 100.0 30 ............................................... GGAAAGATGTTGTTGTATTGCTTGCTGCAG 541548 47 100.0 30 ............................................... CAACAACGTTAAAAAGTGGCAACCCATTTA 541471 47 100.0 30 ............................................... GCCCGTCAAATACTCGGCTTAGCTTATCAA 541394 47 100.0 30 ............................................... CCACTCGAAAAAGGTAGTATCGGACGAAGA 541317 47 100.0 30 ............................................... AAGCTCAAAGCCTTTACAATGCTGCTATTA 541240 47 100.0 30 ............................................... AGGGGATTTAATAATGACATACCACTAGGT 541163 47 100.0 29 ............................................... CGATTGTTTTCTCGTCGCCTTTCACGAGT 541087 47 100.0 30 ............................................... GGAAACATAAAACCTAAATTCATATCCTTT 541010 47 100.0 30 ............................................... TGTCAGCCTTTCCGTATTTGTCCTTTGGCA 540933 47 100.0 30 ............................................... TTCTATTTGGTCTGATAATTTAAATTATGG 540856 47 100.0 30 ............................................... GGTTATTCTCTCGACCCTAATTGTCAGAAT 540779 47 100.0 30 ............................................... ATGCCGAAGATGTAAGTAATGGTAGTGCCA 540702 47 100.0 30 ............................................... TAAAAATTTATATTGAAAAGATATGATAAA 540625 47 100.0 30 ............................................... AAACAGTCTTTGAAAATCTTGTGAAAATGC 540548 47 100.0 29 ............................................... GACTATGGTATCTTCGTTATCGTCTACTT 540472 47 97.9 30 .........A..................................... AACCTCCGAGCACATTACGAAATGCCTACT 540395 46 91.5 0 .........A...............C....C......-......... | ========== ====== ====== ====== =============================================== ============================== ================== 39 47 99.7 30 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGAAAGCTTATAGATTTAGTCAATATAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAACCAAATGCACCAGGAGCACAGTTAGAACTCTTTTAATCCTCCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAATACTGATGTTCATTACTTTAATCTACTTGA # Right flank : TAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGAAAAGGGGAAAATAGAGAAAAAGAGAGCTGGAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGACGGAGCGCAAAATATAGCCTATATACGAATAAAAGTGTTCGTTTTACAACGTAAAAGGTATAATTTCATTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACAAAGCACTTATGGTAGCACGTAAATAATGGCGTTATTTGCAAATAAATAATTTAAAGTGCAGAAAAGTACCCGTAATTCCGAAGTTGAGGCTCTGAATTTTAACAATCCCGGAGTCGTTTTAACAAATATTCAAACTTTAAGGAATAAAGGTATGCAACCACTGAAAATAAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //