Array 1 65878-64200 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFV01000029.1 Escherichia coli strain M44 M44_BDMS190049487-1a_1.clean_(paired)_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65877 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 65816 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 65754 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 65693 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 65632 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 65571 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 65510 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 65449 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 65388 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 65327 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 65265 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 65204 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 65143 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 65082 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 65021 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 64960 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 64899 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 64838 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 64777 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 64716 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 64655 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 64594 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 64533 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 64472 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 64411 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 64350 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 64289 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 64228 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82445-81379 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJFV01000029.1 Escherichia coli strain M44 M44_BDMS190049487-1a_1.clean_(paired)_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82444 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 82383 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 82322 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 82261 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 82200 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 82139 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 82078 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 82017 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 81956 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 81895 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 81834 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 81773 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 81712 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 81651 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 81590 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 81529 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 81468 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 81407 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //