Array 1 163391-164467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051206.1 Dolichospermum flos-aquae CCAP 1403/13F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 163391 37 100.0 36 ..................................... AAAAAATCGCCGCTGACTTGGGCGTTATCCCCACAT 163464 37 100.0 38 ..................................... TCAAGTTCTTTGAGTGCTGAGGCAACAGCATCTTTACC 163539 37 100.0 35 ..................................... CCTACATCTAATCCTGCGTTAGACCAGTGTGCCAA 163611 37 100.0 36 ..................................... TCAAGTTGGTTGTCTGAGTGTAAGACTAATCCGATT 163684 37 100.0 34 ..................................... CCTTGAAGAAAATGTTAAAATAGCTATCAATAAC 163755 37 100.0 35 ..................................... TTTGAGGCTGTAGGGTACAAGAACGATATTATTAA 163827 37 100.0 36 ..................................... AAAGAAGGTGGTCGCGTGCCGATTATTTACGGTGTG 163900 37 100.0 41 ..................................... GAATATTTCAGGAATCGTCAAAGCCGGTGATTTAGCCTACG 163978 37 100.0 41 ..................................... TAAATAATCTAAATCAACCAGATAAACAATTAGTATTGCAA 164056 37 100.0 36 ..................................... AATCTACCAATAGGGGAAACTCTTAGCTTTGCAACT 164129 37 100.0 39 ..................................... ATTATACGGGGCAAATATTATTATGGACAAATTCATTAA 164205 37 100.0 36 ..................................... AAACCCAACAAAGAAGCCCAAGCACTTCAAGACTGG 164278 37 100.0 44 ..................................... ACAACTGCACATACAGCGGCAACCAATAGCACTTATGTTGGCGT 164359 37 100.0 35 ..................................... AATAGGGTTTTAAAAGAAAGTGTCCGTACACTCTA 164431 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 100.0 37 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTATTTCTTACGATATTTCTGACGATAAACGGCGGACTAAAATCCATAGTATTCTCAAATCCTATGGCCAATGGGTACAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAGTTAAGATCGCGTCTTAATAAACTCATTAAACCTGAAACCGACAGCATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATTGGTGGTCAAGAACCCCCTGATCAGACGATTTTCTTCGCTTAATGCGCGGATGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCCACACAACGTTTTCATGGAGTTCATGGAGTTCATCCATCCGCGCACCTTGCACAGCAAGGGTTTCAGCTATTTTACTCCTTGACACTTTTTCTGAAATGGATTATTATAAGACTATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCCGTCCGCT # Right flank : CCATTGCAACTAACAAATTGCGGGTAATAATTGCTTACCCAATTTGGTTAATTCGTCTTTAATTTCTACATACTTGGTGAAGTACCGGGGGGATACTTTTCGCAGGTTGATCAGGACGTTAAAACCGTCTTTATCTTGTGGCAGTTCACAAGCAACCATGAGTTTTTTAGTCTTACTCCAGTGGGTATCGCTGCATCTTTTCCCGATCAATGTTTCATAGATAATTCGTGTCTGTTCCATAGGGTGCAATAGGTATTTATTCGTTATTACGTTTTTGCATATAATCGCTGCAAAGTTGCCACATCCCACCTATGGAATTGGTTCATATTGCATTTATTGGGGTGCTACGAGTGCAGCTAGATTAAATATGCAGTATCGTGTTAGCTTGACAAGCTTAGTAAATTAACCTTTATCCTTTGCTCACAAGACTTACAAGGATGCAATGCCTTTACATAACCTGTCTCTACAGTTCCATGATAGCACTATTTTTAATGCTGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 1520892-1521111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051206.1 Dolichospermum flos-aquae CCAP 1403/13F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 1520892 24 100.0 50 ........................ TTGGGGATATGGGATGTACCATTTTTGGGGATATGGGAATGCGATAGCGT 1520966 24 95.8 46 ...T.................... GTTTTAGGGTAGGGGATGTGAGGGGATGTGGGAGGTGCGATAGCGT 1521036 24 100.0 28 ........................ GTTGTAGGGGATGTTGGATGCAATAGCG Deletion [1521088] 1521088 24 95.8 0 .....T.................. | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 97.9 42 AAGCGCTGCTGCAAGCAGTTCGCT # Left flank : CACATTTAAAGACTAAAGCCACCACCAGTAATTTAGCAGAAAGGGAGAAATGGAAATGGATATTAATTAGAGGACTTTATGACCGGGGCTTCACAAAAGAGAAAGTTATTAAGTTATTTAAAATCATCGACACAATGATGACTTTACCTAAACAATTACAAGCAGGATTGGTTACTAAAATTAAACATTTCGAGGAGGAAAGAAAAATGCCTTTAATTAGCCCAACAGAACAACTAGCTATGGAACGGGGAGAGCAACAGCTAATTATACGACAAATAAATCGGCGAGTTGGTGAAATTGAATTATCCTTGATTGACTCAATTCGTAGATTAACAATTGATAAATTAGAATTATTGGGTGAGGCTCTGTTAGATTTTTCTTCTGTTACTGATTTAGAACAATGGTTACAAAATAACCCAGATGCTTGAGATTAATCATATTTATTAAATAGAGCGATCGCTCCTGGGAAACCGTTTTGTGAATATGAGAGGGCGATAGCG # Right flank : TGTTTGGGATGATGGGAGTGCGATAGCGAAGCGCTCCGCAGGAATCGCTTCATGAAGAGTACAATTTTCTACGCACAGGAGCAAAGGGAATTTCTTTACCCTTTTGTTGATAATCTTCCTTCACTAACTCCCAGGCTAATTTTAGTTCTTGCAAAGCTTCTTCAGGAGTATCACCAAAAGCTGAAATGTTAGGTATTTCTTGGAAATGTGCTAACCAATCTCCTTGTTCATCAATATATAAATTAATTGTAAAGCCATTAAAATTATAATTATTTAAAGTCATTACTGATTTCCCTCTTGATATTCAAAAAACTGCTGAATTTGATAGAGTTTTGCTTTTCCATCTTTACGAGGTTGAATTGGTAAAGGTTGTCCATTCGGTGAATACCATAAACGATGACTTCCTTTTTGACGACTAAATTCCCACCCATTCTGAATGAGGAGAGTTTCAAATTCATCAAAAGTTAGATTTTCTGGACTATTGTTAGCTTTTTGCCATA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGCGCTGCTGCAAGCAGTTCGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //