Array 1 61791-62025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLO01000002.1 Porphyromonas gingivalis strain WW3102 NODE_2_length_170437_cov_31.5274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 61791 37 100.0 29 ..................................... AAAATAATCACACTTATATAATATGGCAG 61857 37 100.0 29 ..................................... TGCTACCGTTCGGGCTTGGGGCAGTGCTA 61923 37 97.3 29 C.................................... CATTGGCGGAATATGTGTTGGAGGATCTC 61989 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 TGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGAATGCAAGCTGATTTGATATAAATCGGACACCTCGAAAGACCTTTAAGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCGATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCA # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATTCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCGCTGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 114406-115036 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLO01000003.1 Porphyromonas gingivalis strain WW3102 NODE_3_length_124878_cov_30.1732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 114406 37 100.0 29 ..................................... TAATAATCATCGCTGTTCTACTTGCATAT 114472 37 100.0 29 ..................................... TAAAAGATGAAAAGTTTAAGATCTCCCGA 114538 37 100.0 29 ..................................... ATCCTTTGATGCGGAGAGCAGGGCTTGAG 114604 37 100.0 29 ..................................... CCTTAGACCTGAAGACCCTGGAAGGAATA 114670 37 100.0 29 ..................................... AAAGAACTAATGCAAAAGATAATGTTTAA 114736 37 97.3 29 C.................................... TGTATTAAACTTATAGATCCTATAGAATT 114802 37 100.0 29 ..................................... TTAGCAGAATTTGCTAATAATGAAGTCGA 114868 37 100.0 29 ..................................... TAGCCATCGAAACATCGCTGTTATGCACC 114934 37 97.3 29 C.................................... ACTAAAAAAGATCTTGGTGTTAATGATGC 115000 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 99.5 29 AGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Left flank : ACTCCCTCCACAATAGAAACATCGGCTTCACTGCCGTAGCGATCATAGAGTCGGGCGATATGCTCCCGGCTCATCATGAAAGCATCCAGATTCACCGTTTCCGTTCCGCATGCAAGGCGGTGATACTTAGGATCGATATAGTCGGGACCGCATTTGAAAGGCTGCACTTTGAGACCGCGCCTTCGAAGCAATCGTAGCAATCCGAGCGTGAAAGTAGTCTTTCCACCACCCGATGAAGCAGCACTGATAAGGAGATGAGAGCGTTTGATAGGAACAGACAATTATATGAGTTAAAAGAATCGAGATTTACAGACAAAAGCCAAGGAAGAGAACGAAAGGCCTCCCAATCGAATGGATAGCTGCACACAAACACTGTCGGCTACAACCCTCTCCTCCGAACACGATCCCCCTATCCATTTTCCATCACTTTAGCGATCGCTAATTTAGGAATACTTCTCCATCAACAGCACAACTGCCCCTCTTTCTCCTTTCGGAATAAT # Right flank : CCGACCCTTTATAAGTCATTGATAGGTTGAGACATATTATTCAAAAGCTTTCCAAAAAATCTATTTTCATGGTCGAGAATCGGAAGAATTTTCCGAATTATCATTTCGTATTTTTTCCATAATGAATCTACCAGAGAACTACCTTCCGGCAGATCTTTGGCAGAAGATCCCTCAATGCTACCGACCTTTGCACTCACATCTCGGTAAATAAGAGGCATTTCTGCAGCGCAGGGAAATTGGTTGTGAGCAGCCTTGTTGCGAATCAGAATCAGGTATTGGCTTTCGTCAGGAGTCAGACAGCCTTTCTTCTCCACCAGCATCTTCACCAGTGTAGAATGCTCTCCGCTCTTACCCTCCCTGCTCGACGACTCGTGCAAATACGGCTTCAAGTCGCGATCAGACATGATGGCTCCTTCGAGTGCAAATGCCCAATCGAAGATTTTGATGCGGCAGCGATCATATTCGCCCAACAAAGTCTTGACTTCATCCAACGTAGCTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Alternate repeat : CGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 18453-15982 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLO01000034.1 Porphyromonas gingivalis strain WW3102 NODE_34_length_18639_cov_33.2593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18452 30 96.7 35 A............................. CGAATGGAAGACCGAGGGGAACCTGTTGTCGAACG 18387 30 100.0 35 .............................. AAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCT 18322 30 100.0 36 .............................. TTCCATAAGAGGCATATTCCCCATAACATCTTCTAT 18256 30 100.0 35 .............................. CGCGCTTCCGCCAGTCCCTTGATGTCCTCCTCGGT 18191 30 100.0 36 .............................. CAGACGGTACCGAATTAGAAAAATTTCGTTGGTTAG 18125 30 100.0 35 .............................. ACAAGCCTCCACGGTTGCGTTGTCACAAGCCTCCA 18060 30 100.0 37 .............................. TTTATTAAGTTGATTACTGTCTATCTTATTTCTTTTA 17993 30 100.0 37 .............................. CGTCCAGCCCACGCATCGCAAACGTTCTGAAAAAATG 17926 30 100.0 36 .............................. CTGTCACGTTCCACTTGACGGTGCCCAACACAGTTT 17860 30 100.0 35 .............................. AAGATTGCACTCGAGCGCGGCGGGAGATATTCTGA 17795 30 100.0 37 .............................. TAACGCGGATACCGTTGTGCAATTTTTAGAGCTTTCT 17728 30 100.0 36 .............................. AATAGAGGAATTAGTTGAGTTTAAGGCAGACATGTT 17662 30 100.0 37 .............................. CCACAAGCCTCCACCGTTGCACTGCCACAAGCCCGAA 17595 30 100.0 37 .............................. ACTACTTTTGGGCACAAACGCTAGAGGAGGATAGCGG 17528 30 100.0 38 .............................. TAAGAGACACAGTAAGCACTTCATTTTCTACGCACCAA 17460 30 100.0 36 .............................. GCGTTTCTTTCGATTAGTTCCTTTCTCGTCATCAGG 17394 30 100.0 35 .............................. TTTTCAGCATTATTCCTACCGCCGCTTTCGCGAAT 17329 30 100.0 37 .............................. TGGGGCAACGCAACGGTGGAGGCTTGTGGCAACGCAA 17262 30 100.0 37 .............................. ACGCCCACGCTCAGCATTTCAGCGGGGTACGGGTCAC 17195 30 100.0 35 .............................. CAGACCCTCCTCGAGGATGTCGCCGGCCTGCTCAG 17130 30 100.0 35 .............................. AGCGTACTGTTTCGCCGCCGTTGTCTTTCCGCACC 17065 30 100.0 35 .............................. ATAACCCGCTGAAAGATAAAATAGTAAGCCTTAAG 17000 30 100.0 36 .............................. TCTACACCAATCCCCAACTAAACCTTCTTTCTCTAA 16934 30 100.0 36 .............................. GTCTTTTTTCACGAGATACATTGTTGTAAACTATTG 16868 30 100.0 34 .............................. TCAGCTCTGTTATGTAGTTCTCTTTGTAGCTGTA 16804 30 100.0 37 .............................. ACCGATGATTTCGATAGCACTACCACCGAACCCGTCG 16737 30 100.0 36 .............................. GGGGCGAGCCAGAGCCGACGTGTATAAAAAGTACCT 16671 30 100.0 36 .............................. ACATTAGCTTCATTTCTTTTGTGTCTGCAACGCCAT 16605 30 100.0 36 .............................. ATCTCCTTGCCGTTTCGGTCTTTCAGACCAGAGTAT 16539 30 100.0 36 .............................. AACTCAGATACTACTGTTCAATTTTTAGAGCTGTCT 16473 30 100.0 36 .............................. CGAAAATCATCAGTTTTTTATCATAATACCAAAATT 16407 30 100.0 36 .............................. AATCTTTGCCATCGAATCATCCACGTATCCCATCTC 16341 30 100.0 35 .............................. ATACTGTTAGCAGATGAAGATGATTATTGTATGAA 16276 30 100.0 36 .............................. CACAGATCGCTTGCGTACACAGATAGAGATAAACAT 16210 30 100.0 36 .............................. TAGAGGAGAAAGTAAATCTTAATATACTATCCTCCT 16144 30 100.0 36 .............................. TTTTGAATGATACAACTACTTGCATGCTGATGTTCT 16078 30 100.0 37 .............................. AGACATCTAATGTTTATCATAATTCCAAAATTTGGTT 16011 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 38 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //