Array 1 38-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWD01000183.1 Klebsiella pneumoniae strain EN5226 NODE_183_length_225_cov_2.0102_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 99 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 160 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGCGCGCTGCGAATTTGTTGGTCGATTTCGATCTG # Right flank : CACGTCCGGAAACCACGGGTTATCCGTGTAATGTGTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 248976-251625 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYWD01000003.1 Klebsiella pneumoniae strain EN5226 NODE_3_length_431683_cov_26.2739_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248976 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 249037 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249098 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249159 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249221 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249282 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249343 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249404 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249465 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249526 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249587 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 249648 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 249709 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 249770 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 249831 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 249892 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 249953 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 250014 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 250075 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250136 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250197 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250258 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250319 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250380 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250441 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250502 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250563 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250624 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250685 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250746 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 250807 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 250868 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250929 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250990 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251051 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251112 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251173 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251234 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251295 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251356 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251417 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251478 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251539 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251597 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //