Array 1 109335-106196 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVSR01000005.1 Serratia marcescens EGD-HP20 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109334 29 96.6 32 ................T............ GCGTCCGGGTTGTGATCTTGCCAGGTGTCCAC 109273 29 96.6 32 ................T............ TCGCGGAAGGCTTCGAGGATTGCATCTTTGCT 109212 29 96.6 32 ................T............ ACCCCGGCTCAGGTTCTTGAACTTGCGCTGCG 109151 29 96.6 32 ................T............ AAACTGATCCACGACGCCAGGGCAAAAGTAGC 109090 29 96.6 32 ................T............ CATACCCACGACGAACGGCTCGCGCAATTGAG 109029 29 96.6 32 ................T............ GTTCGAGGTACTCCACCATTGCAGCAAAGTCA 108968 29 96.6 32 ................T............ TCCAGACCGCCAAAACACTCTTCCCCTTTCAG 108907 29 96.6 32 ................T............ TAATCTATACGAAGGCGAAAGCGAACTATTCA 108846 29 100.0 32 ............................. CGTCGATCCGGTTTGGTGTGGAGGGCTTCAGA 108785 29 100.0 32 ............................. GTGCTCGCATCCTTGATCTTGGCCTTCATCTT 108724 29 100.0 32 ............................. CAGGTGACGATAGCCACGAATCAGGAACGCTG 108663 29 100.0 32 ............................. CATCAGCGGTGCGTTTTATCACGTATTGAAAG 108602 29 100.0 32 ............................. GTAGAGGACTACACCCTTGATGGAGTGAAGGA 108541 29 100.0 32 ............................. ACCGAGCTGGCAACGTAGTCCCGAACGCAACG 108480 29 100.0 32 ............................. ATGGCGGTCACCGCGGCATCCACCGCAGCAAT 108419 29 100.0 32 ............................. GGCGAGCCGTGGCGCATTATTCTTGATAGGGA 108358 29 100.0 32 ............................. AACATGGCAGAGCAGGACGGCGGTAGCTTGGT 108297 29 100.0 32 ............................. TAGCGATGAGCCGATCACCCCACGATTGTTTA 108236 29 100.0 32 ............................. GTCACAGACTTTTCAAAGATGCTCACCAGCAC 108175 29 100.0 32 ............................. CAGCTGTCCTATAGTATCCATCAAGCAGTAAC 108114 29 100.0 32 ............................. CGATGATGGCCCAGCTGCAACTGCAGAGCCTC 108053 29 100.0 32 ............................. ATTTGCCGGCCGGCGAGGGTGATGCTGCCCAT 107992 29 100.0 32 ............................. CTAATTGCATCTTGTCGTCGTCGTCCGGCCAA 107931 29 100.0 32 ............................. CCGACAGTTTTAAACATGGTGCTTTCTCCTTG 107870 29 96.6 32 ............................A AAAACTTGGTCTTGTTCAGCAGTCCATCGCGG 107809 29 100.0 32 ............................. CTGTAGAAGTGGTTTAATAGGCTGCGGCTATG 107748 29 100.0 32 ............................. ATGTGAAGCATTTCCCGCGTTACCGGACAGTT 107687 29 100.0 32 ............................. GCAGTACCACATACGAACGTTTGGACGTACCC 107626 29 100.0 32 ............................. CCGGCATTGCATCATTGTTCTCTAAATGAGAC 107565 29 100.0 32 ............................. TGAGAAACCGACCAACCACGCCACCAACGGAA 107504 29 100.0 32 ............................. GATGGCACATCGCGATCACTTCAGACAGGGAT 107443 29 100.0 32 ............................. GATTGGTTCGAGCCATCCCGAACCGTTGAAAA 107382 29 100.0 32 ............................. AATCAGTATTGACGCCGCGGCGGGTATATTTC 107321 29 100.0 32 ............................. AAGTTGCGCGCACTGTGACCGATAGGCCGGAA 107260 29 100.0 32 ............................. CGCTTGGAAGAAGAGCGCGCTGCCTGGATGAC 107199 29 100.0 32 ............................. CCCAGGGAACCTCTCTGGGCTCTAAAATTTAA 107138 29 100.0 32 ............................. GTAGAGAAAATTTTCACGTGCTGGGTTTGGGA 107077 29 100.0 32 ............................. AGCAAAACGATTTGCTTACTCGCGGCCTGATT 107016 29 100.0 32 ............................. CTGGTTCCGTCCGGGTTCTTTATCCTCAATCC 106955 29 100.0 32 ............................. GTATCTTCAGCCATCGCCTTGCCGACTTTTGC 106894 29 100.0 32 ............................. TGCCGTATCGCGCTGTGGTATGCCGCGTGCGC 106833 29 100.0 31 ............................. GTCAACAATTGAGTCCTCGATGGCTTGGGGG 106773 29 100.0 32 ............................. CCATCGCGGATGCCCGTGCGTTGCTGGCGTCT 106712 29 100.0 32 ............................. TAAACCGCGCACGCGGCGCCGCAGATCAGATG 106651 29 100.0 32 ............................. AACAGGCTAACTTCACCGTGCTCAACACAGTA 106590 29 100.0 32 ............................. CATGTTGCATAGATAGTGCTTGACTTTGTTTT 106529 29 100.0 32 ............................. AGCGTCGCAAAGGCGACGGATGTTCTTCAGTG 106468 29 100.0 32 ............................. GGCATGTGGGAGTTTCCGCGTATTAACCAGGG 106407 29 100.0 32 ............................. CGCTCGGTGATTGGGTTCATCTCGATGGTGCC 106346 29 100.0 32 ............................. CCATCCAGGCAGAGACAGTGCTGTATGAGGCC 106285 29 96.6 32 .............T............... TAACCCCAATGCCACTGCGGATCCGCCAAACA 106224 29 86.2 0 ...............A........G..TC | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCTGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAACAGGTTTTAGTTTTTAATGTATTGATAATTAAATTCTATTTGGTGAACGGGAAATTCGCCAAGAATGTGTTTTGAAATTTGATTATAAATCAATTGGTTGTGTTTTCTAGAGAGTCGAAATTATTTGGTAGAATTTGAGGTCTTTAAAAATACATTTTAATTCAATAACATACTCTAAGA # Right flank : CAGAGCTTCACTGCCGCACAGGCAGTTCGAATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGTAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGATACCAGTGGGGTAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAGATGACATCAGGCCGCCATAGCTAAGCGCGGCATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCCGTCTTGACGATAAGGGATTATTTTACACCCACGGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114186-113729 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVSR01000005.1 Serratia marcescens EGD-HP20 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114185 29 100.0 32 ............................. CGTTTCAGCTCGATTTATTACGAACCAGGCGG 114124 29 100.0 33 ............................. GTAAGAGCGTTGATCAGCGCCTTCCATGTACCC 114062 29 100.0 32 ............................. ACGTCGGCGCGTCGCTGGCGAACCAGAAGAAC 114001 29 100.0 32 ............................. CAGTTCCAAAACATCCCGCGGATCAGCTGTAA 113940 29 100.0 32 ............................. CCGCGGTTGTCGGTCATCTCCAGCGACAAGAC 113879 29 100.0 32 ............................. CTGATCGTCACCAGGCGTGGCGAGGTATTGAC 113818 29 96.6 32 ............T................ CGGCCCTGACGGCCCGCTAACGCGGAGATACG 113757 29 86.2 0 ..........T.TT............T.. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAAGTATTGGCAGCAGGAGAGATTGCAGTACCACCACCTTTCGAGGATGCGCAGCCGCCGGCGATTCCCGAGCCTGTCGGATTTGGTGATGTTGGTCACAGGAGCCGCAGTTGATGGCGATGCTCGTAGTGATAACGGAACAGGTTCCTCCCAGACTGCGTGGCCGCTTGGCGGTCTGGTTGCTGGAGATCCGTGCGGGGGTTTATGTAGGCGATGCATCGCGTAAAGTCCGCGAGATGATTTGGCAACAGGTTACTGCGTTGTCAGATGAAGGGAATGTTGTTATGGCCTGGGCGACGAATAATGAATCAGGATTTGATTTTCAAACCTGGGGGGAAAACCGGCGTGAGCCGGTGGATCTGGATGGACTGAGGTTAGTCTCTTTTTACCCTATGGAAAATCAATAAGTTACCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGGTTGGTAAAAAAATAAATTATTACAATTGGTTATGTTTATA # Right flank : TCTTTTATTGGCGGGGTGCGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGTGCTGTCGCTGAATGAGGTGTGGGGCGACGTCGCCATGATGCTGGTGCTCGGCGTGGTCTATACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGCGTAGGGGATAAATAAAGGCGCCATTTTCGGCGCCTTTATTATTTCGTATTATTGATATGTTTAAGGTGATTTATTTAGCGGGACGTCTACTCTTGTTTTTAATTTGATTTGTTATGTTGACTTTGGTAGTTGTAATTGTCGACCTGCTTAGGAAATTGATGGTTGGCGTTAACTTTATCTATAACATGTTATTTAAAGGATGGAATAATATGTCAACAATAAGAGCGCTTGATTTTGATGAGATGAAATTGATTGGCGGTTGTGGCGATGGAAATAACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 124820-123080 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVSR01000005.1 Serratia marcescens EGD-HP20 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124819 29 100.0 32 ............................. CCGATTGATTACCAGGATGAGCCGCTCAAAAA 124758 29 100.0 32 ............................. CTTCTAGGTTACTAGGGCTTAGATAGCTTAGA 124697 29 100.0 32 ............................. GTATGGGCGGTATCGACCATCAACGGCAAAGA 124636 29 100.0 32 ............................. TCGACGGGTATAACCCTTTCGACAATGATGCG 124575 29 100.0 32 ............................. GTGGCGCACAAACACGTGCACCGCTGGGTGAA 124514 29 100.0 32 ............................. TGCGCTGTACGCAATTGTCAGCTCCAACATGA 124453 29 100.0 32 ............................. ATATCTCAATCACCCGTAACTTCTCATATCCG 124392 29 100.0 32 ............................. CCAGTCCTTCACGTCCTCGGCGTGGATGTGCT 124331 29 100.0 32 ............................. GCCGGAGACTATGCGCGGATCCTCACCGGCAA 124270 29 100.0 32 ............................. CCGTTGGCGTTATACAGCTCGCGCGGCTCCAG 124209 29 100.0 32 ............................. GTCAGCTTCACGTTGCTTCTCCAGCTTCGCAC 124148 29 100.0 32 ............................. GTCTTCTCGGCATCGTGTTTTCTGAATCGGTG 124087 29 100.0 32 ............................. AAGTTCCGCGTACCGCGTGGAGTGCAACGCCT 124026 29 100.0 33 ............................. CCGTTAACCGGGCTGGCGCCGGCATCGGAGTTA 123964 29 100.0 32 ............................. TACACGCAGAGCGCAGATGTGATGACCGTTTG 123903 29 96.6 32 ...........A................. ATCGATTCACATCTTAAATGGCAGATGCCTGA 123842 29 100.0 32 ............................. CTCAGTTTGGCGATTGCGGGCGCCAGCCTTTT 123781 29 100.0 33 ............................. CATCGGCTTTTGTTTACCGCGCAATACATGTGC 123719 29 100.0 32 ............................. TACAAGGCCGAGAAAGAGGCCGGGCTGATTCA 123658 29 100.0 32 ............................. AATTCGAGCCAATCCCCCTGCCAGCACAAGCA 123597 29 100.0 32 ............................. GCCAACAAGAGCCGCACGATTGATGCCGGGTT 123536 29 100.0 32 ............................. AACTGGGGTTTCATCGCTGAGCAGAATATCGC 123475 29 100.0 32 ............................. ATGTGAAAGCCCGGATAATGGGCGGTAAAGCT 123414 29 100.0 32 ............................. AAAGCGTCCGACGGTAGCATTTTTATCGCGTA 123353 29 100.0 32 ............................. TACGGCGTGATCCAGACGGCAAAGCAGCACGT 123292 29 93.1 32 ..........T............G..... GTGTTTGCGCTGGATGTGGTGGCACGGCACCA 123231 29 93.1 32 .......T....................C CAACTGATGGGTAGTTGGCCGGTCAAGATATG G [123209] 123169 29 82.8 32 A........ATAT................ GGCGCGACAACGAAGCCTACAGCAGCATTAGC 123108 29 69.0 0 A.......TA..TA..T........G.AA | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACTATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAGGTGTGGGGCGACGTCGCCATGATGCTGATACTCGGTGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAGGCGGCGGGCGTAGGGGATGTATCTTGTTGTTATAGCGTGAAAATTCGGTAATTCTGCTTTATTTCTATAGATGGATTTTTTATTTATTAAATTTCAAAGGGTTATGTGGTTTCCCGGATGCTTAGATCGCGGTGAAATTTCGTAGATGTTGAAAATTCATTTAATTCAACTAGATATATTTAGA # Right flank : ACCAATAAAAAGAGATAATATCAACCACAAAAAAGTATCATGCTAATTATATCAATTGGTATAAGCTTTTTTTTGTCTTATTTAAGAGAATATATGAAATTTAAATTAATCTTTTTTTGCTTTGGCTTTACTGTGTGAGCTTAACTGGTTTTTTGTGTTTCCGAATAATTTATAAGTACCCTTAATCTGATAGAGATGCTAAAAGTATAAAGCGTTATTTATATCTAAACGGGATTTTTTATGGGAAGCGATATCCCTGACTATATGCGCTACTGGGGAAAGGCCAAAAAGGTAGACTTACCAGAGGGGGATGATTACCACCTGCTAGCTTATCACTGTCTGGATGTGGCGGCGTGTGGATATCAAATGGTTATTGATAATCGTTTCCATGCCGCTGACATTTTTGCAGAGATCGGATTTTCTCGAGATGATGGCGCATACTGGTTTGCTTATTTCCTGACGTTACACGATATCGGTAAATTTGCGCGAGGTTTCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //