Array 1 62357-61368 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QZHM01000001.1 Moraxella catarrhalis strain COPD_M46 NODE_1_length_346876_cov_22.2097, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
     62356	    28	 100.0	    32	............................	ATGGGCGGAGACGGTGGTGGTCTTGATGATTT  	
     62296	    28	 100.0	    32	............................	AACCCCAATTTGGGGGCAAGTGTGGACATGGA  	
     62236	    28	 100.0	    32	............................	CATCGAATCGCAAAAACTCACTGTTGATCAAG  	
     62176	    28	 100.0	    32	............................	ATATCGCTAAAATCTGTGCCAAGCGTATCATA  	
     62116	    28	 100.0	    32	............................	GATAAGCTGTACGGGCTAAGCGATACCACTGT  	
     62056	    28	 100.0	    34	............................	CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC	
     61994	    28	 100.0	    32	............................	ACTGTCAATATAAGCCTGCGGAAATTCATAAA  	
     61934	    28	 100.0	    32	............................	GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC  	
     61874	    28	 100.0	    32	............................	GCACTTTCAATGCTTGGTATCTTGCTGTTAAC  	
     61814	    28	 100.0	    32	............................	ATCGGATTATGTTGTTCCAGTTTCAAAATATC  	
     61754	    28	 100.0	    32	............................	AAAATTATTACAAGATTTTTGGAAGTTAGCTT  	
     61694	    28	 100.0	    32	............................	AAGAATAATCAGTTTTAGCTAAGTCAAACAGA  	
     61634	    28	 100.0	    32	............................	AATGGGCGGTCAGCTCAGGCGTAAACACAGCA  	
     61574	    28	 100.0	    31	............................	ACCGAGCGTAACCGCATTACCGCGCCATCTT   	
     61515	    28	 100.0	    32	............................	TGAGTTGTACGCATAAAATGCCGTTTTGCTGT  	
     61455	    28	 100.0	    32	............................	ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA  	
     61395	    28	 100.0	     0	............................	|                                 	
==========	======	======	======	============================	==================================	==================
        17	    28	 100.0	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                  	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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