Array 1 71-1868 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVQ01000064.1 Pectobacterium versatile strain NY1765A NODE_64_length_20286_cov_13.3128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71 29 100.0 32 ............................. CAAGCCAGTGAGACCGATCGGCGTTATTGAGG 132 29 100.0 32 ............................. GTCATTGCCTGCGGGGGTATTATGAATAAACC 193 29 100.0 32 ............................. CGAACGATCCCTCAAAACTCGCTGATGTGGAT 254 29 100.0 32 ............................. AGGCCAGGCTAAAGGCGGTGGAAAGCAAAAAG 315 29 100.0 32 ............................. CAAAACGCCATTAATTTTATCCGGCAGTTACC 376 29 100.0 32 ............................. CAGATGGTTGGTACCAAACCACCAGCCGCAAG 437 29 100.0 32 ............................. TGGCAGCCGGTCACAATATCACTGTCACAACG 498 29 100.0 32 ............................. TGACAGTAAGTCAGATTGAGCAAAAAACTGGC 559 29 100.0 32 ............................. TCTGATTTGTTCATGGAATTTACCCGTTAATG 620 29 100.0 32 ............................. TTTTTACCGTGGGTAAATATCCGTATATGTCA 681 29 100.0 32 ............................. GTTATCTCTGTAAAGCCGCTTAACGATTCAGG 742 29 100.0 32 ............................. CTGCGCGTCTGGCGCTGGCGTCATCCGCAAAC 803 29 100.0 32 ............................. CACAATGGCAATGAAACGCTATGGCGCTGACG 864 29 100.0 32 ............................. GTGTAGCGTATCATTTTGACCCCCGCTATCAT 925 29 100.0 32 ............................. AGGTCATCACACCTCGCCGCCTGCACGACGGA 986 29 100.0 32 ............................. CACTTCTTGCAGAATTTGCTGGCTGGTGTCCG 1047 29 100.0 32 ............................. TCAAATCGGCGCTGGCCGTCCAGCTCAACGCC 1108 29 100.0 32 ............................. TGCAAATGGTCTATTCGCAAGTTGAACGCGCC 1169 29 100.0 32 ............................. GCATTGATTGATGAATGCCTGGCGGATTGGGT 1230 29 100.0 32 ............................. CTGCGCCGGGCTTACATTTTCGGGCAGATGTC 1291 29 100.0 32 ............................. CCTGGCCATCATTACCGCTAAAGCACGTAGTG 1352 29 100.0 32 ............................. CGATATAGAAATTATAGGCCGCGTTTTTTGGT 1413 29 100.0 32 ............................. CTTATTAAACGATTTGAGGGCTGCGAACTGGC 1474 29 100.0 32 ............................. TATGGAAACCGGGCAAATGCCTGTTATCTGAG 1535 29 100.0 32 ............................. CCGTTGATCTATCAAGAGCGTAAGAAGCCCGA 1596 29 100.0 32 ............................. CCGTATGGCTCTAAATTCCCAACGTTGGAAGA 1657 29 96.6 32 .............C............... GGCGACTTACCGGCTTGCGATTCTCGGGGTGT 1718 29 96.6 32 .............C............... ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 1779 29 96.6 32 .............C............... TCGGGACGGCGTTTTTTCATCGCGCCCCCACT 1840 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGAG # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24104-25033 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVQ01000024.1 Pectobacterium versatile strain NY1765A NODE_24_length_70838_cov_13.2073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24104 28 100.0 32 ............................ CATAACACCATGCTCTATCAGGGTGTGAGCAA 24164 28 100.0 32 ............................ TTGGGCAATAAATCTTTTATGGGTGGCATTTT 24224 28 100.0 32 ............................ GCAGCGCGCTACCTGTTTGTCTTTGGCGTATT 24284 28 100.0 33 ............................ GTCAACGGGGTGCCAGCGCGAAAGCGAGTATCA 24345 28 100.0 32 ............................ TGACCGATGATCTGGCCCGGCAAGTCGGAGTT 24405 28 100.0 32 ............................ AGTTGAGATACATCTCAGCGGAATCAGGTTTA 24465 28 100.0 32 ............................ CGCTATCGTCCAAAGATTTTGGTGAATGAAGA 24525 28 100.0 32 ............................ ACGATTAAACAGATACTGAGCGGCTGGCGTTC 24585 28 100.0 32 ............................ ATAATGGCAACACATATCAAGTTGATGCCCGA 24645 28 100.0 32 ............................ GTCATGGATGGATAAAGACGAACCGGCCAAAT 24705 28 100.0 32 ............................ GGGGCCAGCCTCTGCGGAGTTGACGATAAAGT 24765 28 100.0 32 ............................ GCCAGCAGTTAACCCTAAAATATGAGCAACAT 24825 28 100.0 32 ............................ TGCTGATATTGTCAGGCTGCGTCAGCGACCGG 24885 28 100.0 32 ............................ GCAGGCTACGCAGTTGTCCGTTGTAGCGACGA 24945 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 25006 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGAATTTACTGCCGTGTAGGTAGCTTAACAAGTATCAGGACTTTCACTTCACCAGACATAATCCGCGATTATTTAACCCAATCTTCCAACGTCAGCCCCGGTACTCGCTCAAATTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCACTGATGGCATGACCCGCGATGGCCGTATCATTCGGGCCAATAGGCGTGCCTGCTGCGGCTAGCGCGATTTTAATTTTCGTCGTAGCGTCTACTGCGGCGCTATCCCAAGGTAACACCGCATCGAGCGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATAGTCGTAGCTCATTGATTTTTAATTTTGATTATCAGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTTGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33168-31458 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVQ01000024.1 Pectobacterium versatile strain NY1765A NODE_24_length_70838_cov_13.2073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33167 28 100.0 32 ............................ GCGCAACATTGCGCTGAATTACATCGTGAGAG 33107 28 100.0 32 ............................ TGCTAACGTTTTCACGCCTGAACTGAACAGCT 33047 28 100.0 32 ............................ TCGACCAGCTGGGCCGCTCCCAAACCGGTAAC 32987 28 100.0 32 ............................ GACTTCGGGCCTGTTGGTGAAGACGTTGTACA 32927 28 96.4 32 A........................... ATACACACGCGCCGCTACCGCCGCCAATGCTG 32867 28 100.0 32 ............................ TGAAACAGATTTGCCATCATGGTCAGGAATTG 32807 28 100.0 32 ............................ TAATGCCTACATCGTGGGCATTGTGAAATTAA 32747 28 100.0 32 ............................ TGCCAAGAATCACAGAGCGAACGGTAACAGAG 32687 28 100.0 32 ............................ TGTCGGTGGCGTGGTATTCTCTGGTGTTGGCG 32627 28 100.0 32 ............................ CAACCGACAGGTAATGACCGCAATCCCACTGT 32567 28 100.0 32 ............................ GGCGCGGGTAGCCCTGAAATCCAAGTCTGAAA 32507 28 100.0 33 ............................ GCAAAGGGAATAGCGCCATCGGCATGGGTCACA 32446 28 100.0 32 ............................ GTTTCTAAAACGGATTGATGAAGTACTGATCC 32386 28 100.0 32 ............................ AAAACCTGTCGCAGCGAAATCATCGCTCAGAC 32326 28 100.0 33 ............................ CTCGCGCTTCATGCGCGGGTCGTAATTAGCGAA 32265 28 100.0 32 ............................ GATCCTCCGTGGTCATACCGTGACAAAGCGAA 32205 28 100.0 32 ............................ TGTATCAAATCCTTTAGCGATGGCGCGCATGG 32145 28 100.0 32 ............................ GCCGTTACCAACGTAAACCCCGCATCGCTCGG 32085 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 32025 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 31965 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 31905 28 100.0 32 ............................ ATTAACGAAATCGGGCAAGTGATTGCACATGT 31845 28 100.0 32 ............................ GCGTAAGGCTGGCTGGTTTGCCGAAAGCAGGA 31785 28 100.0 32 ............................ CAGAACCAGTCACCTTTCTGAACCAGTCAATG 31725 28 100.0 32 ............................ GAGATATACAGATCGGTAAAGACGTGCATTCG 31665 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 31605 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 31545 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 31485 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGGGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATGAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGATGGCTGCAGAAAATATTACCCAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGCGTTACTTTTCTTGGAATGAAAAATTGCGGGTTGGGCATTATTACGATTTAAAAATCATCATTTTTCCGTTAAAGTGTTCTCACAGGGGAATAACACGTTGACTTAAGTCAAATTCAATGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCGATATTTGGCTGTACCGATCCTACTTCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 42125-42571 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVQ01000024.1 Pectobacterium versatile strain NY1765A NODE_24_length_70838_cov_13.2073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42125 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 42185 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 42245 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 42305 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 42365 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 42425 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 42485 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 42545 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : GCTTATCAGGATGCGTCGCTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACTGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCAGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3745-2130 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVQ01000108.1 Pectobacterium versatile strain NY1765A NODE_108_length_3814_cov_15.8026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3744 29 100.0 32 ............................. GCAGACGAGATTATAAATGGTAAGCGCGATGC 3683 29 100.0 32 ............................. GCATTCCACCAGCTCCAGTGGGAACAGAAATT 3622 29 100.0 32 ............................. ACCTCGTTGACTGTTCGGCTGAGTGGCCTAAC 3561 29 100.0 32 ............................. ATAATCCTGATGGCCCGATACGACTACTGAAA 3500 29 100.0 32 ............................. CGCGTGATGTCCAATCTGCGCGTTGCCATGCC 3439 29 100.0 32 ............................. CGATGACTTTACGGTGTACCTCCTTGCTAAAA 3378 29 100.0 32 ............................. CACGTATGCGTTACTGTCGTCAGGTGACGCAG 3317 29 100.0 32 ............................. AGCTAATGGCGAAAACGCCAATACGCCGCCGA 3256 29 100.0 32 ............................. TTAACATTGTCTGATTGGACTGCATTGATGAA 3195 29 100.0 32 ............................. TATACTACGGCGATGAAAAAGATTTCTGGTGT 3134 29 100.0 32 ............................. AGATGGTGTTGTAGTAGATTTTGATGAACATA 3073 29 100.0 32 ............................. TCTTATGTAGATCTTGCCATGTCGCAGCATCC 3012 29 100.0 32 ............................. TCAATGCCTCGATCAGAGTTGACTTACCGCCA 2951 29 100.0 32 ............................. CCTAGCGGTAACGTTCCCCTGTACCCACATCA 2890 29 100.0 32 ............................. AGCTCGAATCATGGGTAAACGATATGCTTCAG 2829 29 100.0 32 ............................. AATCAGATAATGCGTTTCGCGTTCGTCGCAAT 2768 29 100.0 32 ............................. TCATCATCCATCTTGTATCCCTTATTATAAAA 2707 29 100.0 32 ............................. GATAAATTATTTTTCTATGCAATACATGATCA 2646 29 100.0 32 ............................. CGGTCGATTAATTAACCCTGCGGCATCGACGC 2585 29 100.0 32 ............................. GAGTTATTTGGTGATTGCTCTAAATCGGTTGA 2524 29 100.0 32 ............................. ACTAAATGAGTCTTCCAACATTTCAGGTCTAC 2463 29 100.0 32 ............................. CTATTCTTGCTGAATCAGGTATCGAGGTTGCG 2402 29 100.0 32 ............................. GATATTCAATTGCGCTAGAAACGCAAAAGAAT 2341 29 100.0 32 ............................. GCTAGGATGATAGGCTTATCCATTATGCATCC 2280 29 100.0 32 ............................. CATGACGCAGTAGTTGTTATTAACAGGGGTAC 2219 29 100.0 32 ............................. ACATGGTGAGGTCTAAGCGATTCGATACCGGT 2158 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAG # Right flank : ATGTGAAATGTAAATTACACATGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //