Array 1 2815-72 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJNI01000007.1 Brumimicrobium salinarum strain LHR20 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 2814 47 100.0 30 ............................................... GGTGGCCACTTTTACGAAATAAGTATCTGC 2737 47 100.0 30 ............................................... GAACTTTAAAATCTTCACCGTACATGATAT 2660 47 100.0 30 ............................................... TGGGGCCAACTAATTTTAGTTTTTGAAACA 2583 47 100.0 30 ............................................... GAACTTTCAAATCTTCACCGTACATGATAT 2506 47 97.9 30 .............C................................. GGTCATCAAGATTGAAAGGCGTATCTAAGA 2429 47 100.0 30 ............................................... GTCAATCGTTGACAAGTCACCATCAACTTT 2352 47 100.0 30 ............................................... CTACGCCATTATAAAGTCTACAGTCGTAAA 2275 47 100.0 30 ............................................... TATAGCTTCTAAATTTGCTCTAGGCCCTAT 2198 47 100.0 31 ............................................... AAGTTCTTTGTTTCCAGCAAGGATTTCACTA 2120 47 100.0 30 ............................................... GCACATCTATATACTTCACTGTTACATTGT 2043 47 100.0 30 ............................................... TATAGCTTCTAAATTTGCTCTAGGCCCTAT 1966 47 97.9 30 .........T..................................... TCTAGCTTCTAAATTTGCTCTAGGCCCTAT 1889 47 97.9 30 .........T..................................... AGTATAGACTATTACCAATCAACACACAAC 1812 47 100.0 30 ............................................... AGATTTTGGAAGATCCACAAGAAAGGAAAA 1735 47 100.0 30 ............................................... GGGCTTTCACTCCCACTTCGTCAAACACCT 1658 47 97.9 30 ............................C.................. AATACCTAATCGCTCTACTTAAAAACCAAG 1581 47 97.9 30 .............G................................. AATACCTAAACGCACTACTTAAAAGCCAAG 1504 47 100.0 30 ............................................... ACATGTATTCCTCTTGCTTCATCCCTTTAT 1427 47 100.0 30 ............................................... GTAATGCGTGGTTTTCTATTTTATCGAGTG 1350 47 97.9 30 .............................C................. AATACCTAATCGCACTACTTAAAAACCAAG 1273 47 97.9 30 ....C.......................................... AGATTTTGTTTCCTTTACCTGAAAGATACA 1196 47 100.0 30 ............................................... AACTTTATGATAAACCAAAAGAATTTTTAA 1119 47 100.0 30 ............................................... AGCTTAACCGTTATTAAAATGTATGGATCG 1042 47 100.0 30 ............................................... GGTTTCTTTCCAACAAAGAAATGAAGTCCT 965 47 97.9 30 .............................C................. GCATACAACCTACACACTTATTCATCCAAG 888 47 97.9 30 ..................G............................ ACTCCTGCAGTTGCTAAGAAAGTAAGGTAA 811 47 100.0 30 ............................................... GGCAATGTATTACAAGACAGGAGGTGCGGT 734 47 100.0 30 ............................................... GCATACAACGTACACAGTTATTCATCCAAG 657 47 97.9 30 .............G................................. GGCAATGTATTACCAGACAGGAGGTGCGGT 580 47 100.0 30 ............................................... TACGGATCATCTTCATCTTTAAAATCTTTG 503 47 100.0 30 ............................................... GGCTTTATAAGTTTTAACAACTGAAATGCT 426 47 97.9 30 ...C........................................... GGCTTTATAAGTTTTAACAACTGAAATGCT 349 47 100.0 30 ............................................... CGCAATAGAGATGCAGTTCTTTTTTCTATT 272 47 100.0 30 ............................................... TGGCTCTAATCATGAGACATGGAAAGAAAC 195 47 100.0 30 ............................................... TGAACTTGGAGCAAACGCAAGAGCGAACGC 118 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 36 47 99.4 30 CTTGTGAATCCTCACGTAAAAGTATCAAAATGAAATCAATTCACAAC # Left flank : CCAAAGATTCTTTTTTAATGGTTGAGAAGCTTCAAGTTGATAGCGCAGTCTTTCATTGTATTCTGAATGACCACTCAATGGAGAAATTAAACTTAATGGTAAATGTTGTTGATTACAACACACTATTGCTGCATTTTGATAAGTCAGTTTTTCAATAAGGTGATTTGTGAAAGTGATTTGTTGATGTTCCAAAACCATCATCCCGATATCTTCAATTGGGACAGTTTTTGTTTGTTCCGTTTCAATTAGCCTAACCACCAATTGATTATTTTTCGTACTCAGGTAAGCGGGGTTTTCAAAAAACAAGGTGCGTTTGATCATAAGCTTAAGTATTGATTTCTAAACTACTATTACGCCATATTCAAAAAAAGGTTTCAAAATCAACAATTTAGAAATAAAAAAGTAGAGGAATAAAGCTAGAATCTAATCAAACCCAATGCATATTTTCATTTCTAATAAACTCTTAAAACACAAAAAGACCGCTCGTTTGAGAGCGGTCT # Right flank : CTGAACTTGGAGCAAAAGCAAGAGCGAACGCCTTGTGAATCCTCACGTAAAAGTATCAAAATGAAATCAATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTGAATCCTCACGTAAAAGTATCAAAATGAAATCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3363-5101 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJNI01000006.1 Brumimicrobium salinarum strain LHR20 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3363 47 95.7 30 T..A........................................... CCGTTGCTGTAATTGGTAACACAAAGCCAA C [3365] 3441 47 100.0 30 ............................................... CCGTTGCTGTATTTGGTAACACAAAGCCAA 3518 47 100.0 30 ............................................... TGTACTTTAATCATTTGCGTTGCATAACTC 3595 47 100.0 30 ............................................... ATTATATTTTATTATTTGGGCCTCTTTAGT 3672 47 100.0 30 ............................................... AACTGTTTTGGTTATCGCAATTATTTACAT 3749 47 100.0 30 ............................................... AGGTATTAACCAAGAAAAAATCGACTCGTT 3826 47 100.0 30 ............................................... ATCCTTCTGCTGGTCCTGAAGCGAGATATC 3903 47 100.0 30 ............................................... ATAGCTTAGTTTTTGAACGTGACAACGCTC 3980 47 95.7 30 ......................TG....................... AAGCTTATCCATGTACTTTTGGTGCTGTTT 4057 47 100.0 30 ............................................... ATAGCTTAGTTTTTGAACTTGACAACGCTC 4134 47 100.0 30 ............................................... AAGCTTATCCATGTACCTTTGGTGCTGTTT 4211 47 97.9 30 ...................C........................... CAGCACCCACCGAACAAATAGTATAGAACC 4288 47 95.7 30 ....G..................................G....... AAGCTTACCCATGTACTTTTGGTGCTGTTT 4365 47 100.0 30 ............................................... TAGCACCCACCGAACAAATAGTATAGAACC 4442 47 100.0 30 ............................................... AGGACCAAAAGAAAATAGTTGCAATCAACC 4519 47 100.0 30 ............................................... CAGCACCCACCGAACAAATAGTATAGAACC 4596 47 100.0 30 ............................................... AGAACCAAAAGAAAATAGTTGCAATCAACC 4673 47 100.0 30 ............................................... ACCATTCAATAAATTTGTTGGCGTTGCTTG 4750 47 100.0 30 ............................................... ACCATTCAATAAATTTGTTGGCGTTGCTTG 4827 47 100.0 30 ............................................... TAGTATCAATATACAACTCGCAGTCATCGT 4904 47 100.0 30 ............................................... GAACTTCGAGGATATTTGTTCTTCGTATTT 4981 47 100.0 30 ............................................... ACGAATATGAAAGTAATGTTATCGTTATAA 5058 44 93.6 0 ............................................--- | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.1 30 GTTGTGAATTGATTTCATTTTGATACTTTTACGTGAGGATTCACAAG # Left flank : AAAGTTTAATTCTTAACATAGATTTCTAAACATAAAATGTATTTTGGTTGTTTTAGAAAAAACTTCAAAGTATGCTTTATAACATTTCATTTAAAGATAAAGACATTGAAAAAAAGATAAATGATCTTGTTGGTGAGCCATATCATCTTGGAGAGGTTGTTTTTAAAAAGAAAGGAATAATTGGATCTTCTCGAATGGAAATTGTTGAACATAGTTTGCTCTTTGAAGACATTATGAAAAAGAGCAAACAAGCGATTTTTGCAAGTATTTCCCTTAGACCAAATGGCATTCTAGTTCTCTTCAACCTCCGGCAAACTACCTATGCTTGGCCTATTCCTTATCATTATTTGTCTGTTTTTAAAACTCAATTATTGGTTATACACGGACAAGGTCAATTTCTAAAATTGAAAATCAAGAAAACACAAAACAAAACTTTTATAAAGAAAATGCTGGCCTTGAAGTCTGAACATAATGGAGATGAATATTATGGATGAGATTAG # Right flank : | # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGATTTCATTTTGATACTTTTACGTGAGGATTCACAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //