Array 1 243516-241852 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSNK01000003.1 Salmonella enterica subsp. enterica strain SA882 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243515 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 243454 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 243393 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 243332 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 243265 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 243204 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 243143 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 243082 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 243021 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242960 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242899 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242838 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242777 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242716 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242655 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 242594 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242533 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242472 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242411 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242308 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 242247 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 242186 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 242125 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 242064 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 242003 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241942 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241881 29 96.6 0 A............................ | A [241854] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260900-259774 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSNK01000003.1 Salmonella enterica subsp. enterica strain SA882 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260899 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260838 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260777 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260716 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260655 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260594 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260533 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260472 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260411 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260350 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260289 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260228 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260167 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260106 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260045 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259984 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259923 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259862 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259801 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //