Array 1 169352-169807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038449.1 Aeromonas media strain R50-22 plasmid pAeme5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 169352 28 100.0 33 ............................ CATCAGGGCATGTCCGGCCCCGCGTTTTCCCGT 169413 28 100.0 33 ............................ TAACGGATGATTTTCCGCAGTTGGCGTAGAACC 169474 28 100.0 34 ............................ ATCTGCTGTTTGATCCATTTTTTGACTCCTGTAA 169536 28 100.0 33 ............................ GGATACGCCGGAGCTGATGGCCGGGCTGTAGAT 169597 28 92.9 33 ...C...............A........ GGCTAATGCTCAATGGAAGTTTTTCTTGGAATC 169658 28 100.0 33 ............................ GGGCTCCGAGGCCCGCGAGGAGCAAAAGCGTCT 169719 28 100.0 33 ............................ CGCCTGGCTATGCAGGCCAGCAAGCTGGCCGCC 169780 28 82.1 0 ...C...................ATTG. | ========== ====== ====== ====== ============================ ================================== ================== 8 28 96.9 33 GTCTCTCCCGTGCGCGGGAGGGTTAACG # Left flank : GGCTGCCTTTTTACATTCTACCCAGGGAGGTTATATGTCCAAGCAAGAGCCTTTGACGATAGAGGTTGCGGCAGAGCGGCTATCAGGCATTGTCAGTGCAGATTACAAGTGGCCGGAGTTGCTGCCGGGCTGGCAATTAGAGTTCATCGCGTACCCTGAAGGTGATCTCGATATGGATATGCTTCACCCGGTGGCCAGGGTGTTTTGGTCCGATGATAATGAGCCTTTGCCTCTTCCCTACAAGAGTGATGAAAGCCCGATAACAGTCTGGGATTTGATCGCCGTGAAGTTGCCGTACATGACCACGTTTGGCTATGCAACGGTTGTGGACAAGCCAAAAGACTCGCACCTCAGCCTTGTTCCCGGTGAGCAGGTGTAGGCCTTAATAGCCGACAGCCAGAGGTGATAGAGTTTCAGAAAAAGTGTCAGCACGAAAAATCAGAGCTTCAAACATCGCTGAATATGCTGACATCGTGCACCCATCTTCGTTATCATTAAGG # Right flank : GTGGGATCAGAGATCGCTCACCGTGGGTGAAAGATGTGGCTGAGGGCTGATATAAAAAAGGGGCAACCGACGATCTGGTTGCCCCTTTTGATTTTACCCCCTGCGAACAGGGGGACGGATTATGCGGTGATACTGGGGGGGCCACAAGAAAATAGCCGATAACCACCCGCGCACGGGTGGATGAAAGAGGATGTGATTAGCTGGCCTTCTTATTGAAAGAACTGGTCACGTCATCGCACCAGGCTTGATAGGCTTCCTTCAGAACATCCCCCTCAAGACGGAATCCATCCTGGTCAAACTCTACCTTACCGACGGTTACCGGCACCATCGACTTGGGCTGCCAAGTTTTGACTTCCCAAGACCCCGATACCAGTCCGCAGCCATGGGCGAGATGACCACCCATACGGGGGGAACGGGCAAACTCCAGCAGGGCGGCCAAGAAGAAGCCCAACTCGATCATGTTGACGCCCTTCAGACCGATCCGGTGCTCCATGACTGTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCGTGCGCGGGAGGGTTAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 180258-180650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038449.1 Aeromonas media strain R50-22 plasmid pAeme5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180258 29 100.0 32 ............................. CCTACGGCGGGGAAACCAGCGAGCTGGTCGAG 180319 29 100.0 32 ............................. GCGGCCAGTTCGGCAGCCAGGGAAGGATCGCG 180380 29 96.6 33 ..................C.......... AGTTGCTGGATTGTTTCGAGTTGGTCGTTATAG 180442 29 100.0 32 ............................. GCGCTGACCGCCGCACAGCGAGCTGCCCCCGC 180503 29 93.1 29 ..........CA................. ATCTCCCACCCAATTCTCACCGTGATAAA 180561 29 89.7 32 ..........CA................T CTATTTTGGTCACCGTTACCAAAAAGGATTCC 180622 29 82.8 0 ..........CA........A....C..A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 94.6 32 GTCTCTCCCGTGCGCGGGAGGGTTAACGG # Left flank : TATGTCCGGCTCAATGGCCAAGAGGTCCATATCGCCGAGACGGTCGCCAACGACAATCTCTGTGCGGCCAGTGATCAACGGATCCGTCGAGAAATAGCAACCCAGATGCGAGTGATGCAGCGTCAGGAACTGCGGCGGCAAGAGCGGATCTACAAAGGCCGCTCGCCGGGAGCGGGGGCTGGTGGCTATAACCGGGATCTGAGTAGCATCGAGCACAGGATTGATGATGCTCGGGTCAAAATTGACATCCTCAATGGAGAGCTTGTCCGGAGGCGTGGAAGTGAGCCCCACGGAGGTTGATGCCAGCCAGAGGAGCTGAACCGGCTGGTGGCTGGACTGGGCAAGCGGGAAGGTAAACCCGAAGGTGATCTCGATATGGACATGTTTCACTCGCTGTCAAACTGGATAGCGTTTCAGCGAGACTGTCAGTGCGAAAAATGAGAGTGTCAAACATCGCTGAATATGCTGACATCGTGCAATCATCTTCGTTATCATTAAGG # Right flank : AGACTGAACTTAAGCCCCCTTTGGCCGAACTGTCTCTCTCAGCGCGATGTGGGGGAGGACGTCAAGAGTAGATCTCGCCCAATGCCTTACGGGCCAACTCCGTGAACTGAATTTCGAGGTCACGACCGACCACCTTCAACTTCAACAGGTCGGTTGTGCAGGCTGTTTCGCCAGCCCGCATTGACAGCCAGAGCTTATGGCTGGCGATTTCCGTGGGATCCGGTGTAGGCAGACACAGCCATTGACGAAGGATCTGTTCCAGCTGGCCAATGAAGTGGAACTTCACCCGCTTGTCGGTGCCGATGAAGTTCTTCAGCCGCTCGGTTTCGTCGATGAGTTTGCAGTTGGCCAGCAGCGTCTTGAAGCCTTCCTTGAGCTCGCGCTGTAACAGATCCTTTGTAGCATCCTGCTCTGCTTGGCGCCCGGTCTCAATGAGCCGGGTATTGAGGAGCGCCTTGCGTTCCGCCTTCTCGATCACAATAGTCATCACGTTGTTGAGC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCGTGCGCGGGAGGGTTAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 189131-189586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038449.1 Aeromonas media strain R50-22 plasmid pAeme5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189131 29 100.0 32 ............................. GGCACGCGCCGCGCCCTGACCCACCTGCGGGC 189192 29 100.0 32 ............................. CCCGCCGACGAGGAGATCGCGACATTCCTCCA 189253 29 100.0 32 ............................. ACGGCACCGGCATCGATGCGCGACTCGGCGGT 189314 29 96.6 32 ...........T................. CCATCGGACTCGACCGCATCGGAGGCGCCCAC 189375 29 100.0 32 ............................. CCCAAGACGATCGCGCCCACGCCCACGACGGC 189436 29 96.6 32 ..A.......................... TACCAGCTCAAGATCAGAGGGCTTTCCTTGGC 189497 29 93.1 32 .C......T.................... TTCAACCCGGCATGTGAACGCCATAAGCTGAC 189558 29 82.8 0 ...C.............A......T..TT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTCTCTCCCGCACGCGGGAGGGTTAACGG # Left flank : CAGGAGGCGAAAATGACGACATGGAAACCGATACACTGCGCCCCGCATGATCGGGTTATCCTCACCGATGAGGGAACAGCTCGATATGTCAGCGCTAAGGAAGCCGGTGTCGCCGGAGCAAGTGGTTGGTATCTTTGCTATTCATGTGGCGACTTACCCCTACCACCAGCCAGCGACAGTCCCGACTCGTGCTCCGTGTCACCCAGAGTCTGGATCGATCTCCCAAAGCTGGGAATCCCCCAGCGGGACATCTCCATCACCCCTCGGCCTGCCGATCTGGGGGCGGGTTGGCAACTGAGGTTGCTGGAGCATGGAGAAGAGGTTGGGGGAGGTGTTTTTCCAGCGGGCCCCAGTCAGTTCGAGCAGGACAATGCCTATAACGAGGCCCTGGCGGAAGCCGATGAGTGGTTGGATAGTCTCTATGGCGACCACCAAAATGCCAGTGCATGAACACCTGCGAACATGGTGATATTGTGCTGCTATTTTCGTTATTATGAAGG # Right flank : TAACGGGCCGCCCGAATCAGAACATTGGAGTTCCCCCTACAGTTTTTTTTGCACTCAATTTGATGAATACCCCTCTCAAAAATCACCAAAAATGCATTAGCCTATCCTCACAGGGGTATTGTATATTTCTGGTGCCGAATACTGAGTGAGAGTGAAATCATGGGAGTCAGGAAAAAGGCGTACCCCCCCGTAGATGATGCCGATGTAGCGTTGCAGAATGAAGCGGGCCCCGTCGCTTTGCAAGAAACCCCTAAGCAGCATAGGTTCATGCTTCAGTTCGAGGCCTGCGTCATGGAGTTTGATAGTGCAACTGGTACCGCCGTTGGGCAGAGAAATCGCGTTCAGGAGCTGCTTTCTCTGGGAGCAATCCGGCAGCTTTATTGGAACCTTGTCGCGGATGGGGTTGTCGCAGAAGCGGCTACTGTGGCCAATTGGTGGAAGGAAAATCACTCGAAACATCAGTTGGGGGAGCTAATTCTATGAAAAATGTTGGCTCTCAT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCGCACGCGGGAGGGTTAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //