Array 1 4512273-4513764 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054897.1 Salmonella enterica strain FDAARGOS_717 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4512273 29 100.0 32 ............................. CCGGCTGATCCAAAGGCGCTGAACCAACTGGC 4512334 29 100.0 32 ............................. GTAGGGCAGATGCGCAGGGAGCGTGACGAGGG 4512395 29 100.0 32 ............................. AAATTTTAGCGGGGCCATAGCGCGCGCCTGCC 4512456 29 100.0 32 ............................. CCGCATTACACGTATTTAATTTATTGCATGAG 4512517 29 100.0 32 ............................. TGAGATCGGCAATTGCTCTCTGGAGTTGCCAT 4512578 29 100.0 32 ............................. GCCAGACAACAGCAGACACCTACGCAACTGCA 4512639 29 100.0 32 ............................. ACAACTTCAAACGGTGATAACCAGGAAATAAT 4512700 29 100.0 32 ............................. TTAGCCTCAACGTAAAATCCTGGGCTTTAGGC 4512761 29 100.0 32 ............................. ATCGCGTTTTCCCTGGCACTTAAGGAGGTTTA 4512822 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 4512883 29 100.0 32 ............................. ATTTTGCGGCTGTATACGTCCTGCCAGAACCA 4512944 29 100.0 32 ............................. CAGGTTTATTTTCCGCGCGGGCAGGCGCTGGA 4513005 29 100.0 32 ............................. TTATCAGCACATAACGGAGAGCGAGGCGCAGT 4513066 29 100.0 32 ............................. ACCTGCCCAGCGGGGAATACTGAATGCATATC 4513127 29 100.0 32 ............................. GGGTGCGCACTACTGAATACAAAATTAAAAAG 4513188 29 100.0 32 ............................. TGCCAGCTCATCAGCGCTCATAACGGGCTCCA 4513249 29 100.0 32 ............................. GCATGACTGTATGGCGTACAAACTGGATAGAT 4513310 29 100.0 32 ............................. GATCGTGATTACGCTAAATATTTAATGAGAGG 4513371 29 96.6 32 ............................T GCCGATTCAATAAAAACAGATAATCTGGCCGC 4513432 29 100.0 32 ............................. GCTGTTATCGCCAGTATGGGCGGCCTGTGGTT 4513493 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 4513554 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 4513615 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 4513676 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 4513737 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4530463-4532749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054897.1 Salmonella enterica strain FDAARGOS_717 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4530463 29 100.0 32 ............................. TTTTTTAATTCTGAGCCGTTTTTCATGGCATT 4530524 29 100.0 32 ............................. TCAGGGAGACGTCCCCACGACGCAGATTTGCA 4530585 29 100.0 32 ............................. AGGTACTATATCAGGTTATTAACTACGGAATA 4530646 29 100.0 32 ............................. ACGCAGACGCGGCGCCCGGTGAAGAGCGTCCG 4530707 29 100.0 32 ............................. CTGGTTTTGCAAATTTACATGATCAATAATAC 4530768 29 100.0 32 ............................. GCGGCGTCAGATTATTTTAACATTACGCTAAG 4530829 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 4530890 29 100.0 32 ............................. GCGTATTTACTAAATAATTTACGTGTGCGCCG 4530951 29 100.0 32 ............................. CGCGTGCCGCCTGGTTGCAGATCTTGACGTAT 4531012 29 100.0 32 ............................. AATACGTAGCTGAGTCACTTTCCCCTTACTAT 4531073 29 100.0 32 ............................. TTTTAGATATATTTCGCACGACGTCGAGTGAC 4531134 29 100.0 32 ............................. TTCGGGCCAAATCTCGGGCGCCCGCATGTTGA 4531195 29 100.0 32 ............................. CCGTTTGAGGGCTATTGCACTGGAAATAACGT 4531256 29 100.0 32 ............................. GAGTTTTCTCACATGCCACAGGCAGCACAACG 4531317 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 4531378 29 100.0 32 ............................. TTGAGCCTCAGTAGCTCCATTAATACGCGCAG 4531439 29 100.0 32 ............................. CTGGGCGAATGGATGCGCACCGACGATAACAT 4531500 29 100.0 32 ............................. TGAGCGTAGAGGGTTTTCACCCGGCTGGCGAT 4531561 29 100.0 32 ............................. CTGATTTGTGCGGGCGTGCCAGAAATTCCATG 4531622 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 4531683 29 100.0 32 ............................. GATTTAAAATTTTTAAGAGCGGCACCAAAGGT 4531744 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 4531805 29 100.0 32 ............................. CATGGCGGCGCGGCAGGCGCTCCACAGCTCAT 4531866 29 100.0 32 ............................. TGTCTACCGGCACGACCTATTCCAACAGCGCC 4531927 29 100.0 32 ............................. CCCACATCGTTACACCGAGATCATTCAGCTCG 4531988 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 4532049 29 100.0 32 ............................. GTGAAAACGACGGCGACGGAGCAGGGGAACGC 4532110 29 100.0 32 ............................. GTTATGGTGCGGGTGGTTCTGGTGGTGGTTCT 4532171 29 100.0 32 ............................. CGCATAAAATCTATGCGGTTTTACGCCATTAT 4532232 29 100.0 32 ............................. ATGCAGGAGGCCTGCATGTGGGCGTGTCGGGC 4532293 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 4532354 29 100.0 32 ............................. CAGCTCGCGCCCGAACTGCAACGGCTGGGATG 4532415 29 100.0 32 ............................. GGTTAGAGCTATCTTTGAAAACGTTTGAGAAC 4532476 29 100.0 32 ............................. GTCCGTGAATCAGGGGCGCGATAAATTTTTGT 4532537 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 4532598 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 4532659 29 96.6 32 .............T............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4532720 29 93.1 0 A...........T................ | A [4532746] ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATTGAAAATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCTGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACTGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //