Array 1 16923-16162 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000054.1 Streptomyces sp. NWU339 Contig_114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16922 29 100.0 32 ............................. GCGCGCAAGGGACAGACGTCGGGCGCGCGTCC 16861 29 100.0 32 ............................. ACCCGGGCCCGACTCCCGCCGCGTATCGGCCA 16800 29 100.0 32 ............................. AGGCCCCCGGCATCGTCGTCGTCACCGGTGTC 16739 29 100.0 32 ............................. TTGTACATGCGCTGGTCGCCCACCTTCAGCTC 16678 29 100.0 32 ............................. TGTACATGAATGTCCAGGGGAGTACCTTGGAG 16617 29 100.0 32 ............................. GCGACCGAGGGCGGCCGGGACGAGATCGTCAC 16556 29 100.0 32 ............................. TATCACTGGCTGTACATCAGGCGGTCCGATCG 16495 29 100.0 32 ............................. TCTTTCAGGTCGTCCGTCGCCCACCGGAACGG 16434 29 100.0 32 ............................. GAACTGCGCGGCGACGCGGACGGTCTGCCCGG 16373 29 100.0 32 ............................. ATCACGACGGCGAAGGAGTTGGCCAAGGACGC 16312 29 96.6 32 ......................G...... TGCCAGCACGCCCCGGAGTGCACCATCGTCAT 16251 29 96.6 32 .......T..................... CGTGCCGCCCGCTCCCAGGCGATCTTGGCCCA 16190 28 75.9 0 ...A.TC....-.......G....TT... | C [16176] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCACCCACGACTACCTGCGCGGCGGCACCACCACCCTGTTCGCCGCGTTGAACGTGGCCACCGGGGAGGTGATCGGCCAGCTGCACCGCCGCCACCGGGCCACGGAGTTCAAGAAGTTCCTCGCCCGCATCGACAAGGAGGTGCCCGAGGGGCTGGAGGTGCACCTGATCTGCGATAACTACGCTACGCACAAGACACCGGCGATACAGCGCTGGCTCGCGGCGCACCCGCGCTTCCACATGCACTTCACCCCCACCTACTCCTCCTGGCTCAACCAGGTCGAGCGGTGGTTCGGACTGCTGACCGAGCGGCAGGTACGCCGCGGCGTCCACAAGAACGTCCAGGCCCTGGAACGCGACATCCGGGCCTGGATCAAGCTGTGGAACGAAGATCCGCGGCCGTTCGCCTGGGTGAAGACCGCGGACGAGATCCTCGAACGCCTCGCCGGATATCTTCAGCGAATCAAAGACTCAGCACACTAGAACCCCAGGTCAGGAAGA # Right flank : ACCCCGGAGTTCTCCCGCATGAACCCGAACACGTCCTCGTCCCGGGTGGCCGACGGCCAAGCCGCCGGCCACCCGGCGGGCTATGCGGCCGGCTCGTACGTCACGCTCTGGCCCGGGCAGCCGGCCGCCGTCTCGTGCAGGGCCGCTACCTCGGCTTCGTCGGCCGTCAAACTCCAGCGGAGTTTCGTGGCAACCCACTCGGCAACGTACCGGCAGTGCACCCCGGCAGCGGGCGGCAGCCACTCGGCGGGGTCCTGGTCGGCCTTGGACCGGTTCGAGCGGGCGGTGACGGCGACCAGGCTGGCGTCGGCGCCCTGGTCGTTGGCGTACGCCTCGCGGCGCTGCGCCGTCCACGCGGATGCGCCGCTGTCCCAGCTCTCCGCGAGGGGCACCATGTGGTCGATGTCCAGGCCGGAGGCCGACGTCACCCACACCTGGTCGTAGTAGGACCACCAGCGCCCGCCCGACAAGCGGCACCGGGGCCCGACCACAGGGGGCTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2963-2263 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000137.1 Streptomyces sp. NWU339 Contig_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2962 29 100.0 32 ............................. CACGCCGAACTGGACGCGATGAGAGCGGCACG 2901 29 96.6 32 ................C............ CCCGCCAGCCAGTAGCCCATCGACGCGCCGCC 2840 29 96.6 32 ............................A CGCGACCTGCGTTTCGTGCGCGACCCCGCCCA 2779 29 100.0 32 ............................. CTCAAGGTGCCCGCCGCAGCAACCCCCGCCGC 2718 29 100.0 32 ............................. GCCGACCGCACGCTGCGCACCGTGCAGGACGC 2657 29 96.6 32 ....................A........ GCGGCAGACCGGCTGCCCGGCCAGTGGTGGGA 2596 29 100.0 32 ............................. GTGCAGGCCTACCTCGACGACGTGCTGCCGCA 2535 29 86.2 32 .........G..A...C........C... GCGCGCACGGAGTGGGAGCGGGCCTGGCGGCA 2474 29 86.2 32 ..G......G......C.......A.... TACGGAGCTGGACTGATCGCCCTGTATCTGGT 2413 29 82.8 32 .........G.T....C.......C.T.. ATCACCGCCACCCAGAAGGGCGCCGCCGAGAC 2352 29 86.2 32 ......T..T......C.......A.... CTGGACCCGCAGCCCGAGATGACCTGACGGGC 2291 29 89.7 0 .........G......C.......C.... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 93.4 32 GTCCTCCCCACCGACGTGGGGGTGTTCCG # Left flank : CACCTGAGTAAACCGGCACCCTTCACGGAAGGTTGCCACACCAGTCGAAGCGGCGGCGGTCGCCGGGGAAGGCGGAACACCCTCACGTCGGCGGGGAGGACTCCTGCTCCGTGCCCCAGTCCTCGGCTGTTTTCGGAACACCCCCGCGTCGGCGGGGAGGACGGGCGCGTCCGGGGCGGACCAGCGCGGGTCGGCGGAACACCCCCGCGTCGGCGGGGAGGACGTCCGCAGCGCATCGAGGATCTGGTCGAGCGCCGGAACACCCCCGCGTCGGCGGGGAGGACTTACGGGCGAGGACGATCGGCTCGTGGGTGGGCGGAACACCCCCGCGTCGGCGGGGAGGACCGATCCGGACTGGTGGGTAATGCGAGGGCGAATGGAACACCCCCGCGTCGGCGGGGAGGACGAGAGGTCCAGTTTCCGCTGCCCGCCGATGGTCGGAACACCCCCGCGTCGGCGGGGAGGACCTCAGCGCCGCGAGCCCGTCCTCCCAGGCGCGC # Right flank : GTGCCGCGTCATCCTCAAACCTGTATGCGCCGGTGCTGTTGCTGACGGCCGGCGACGTCGAGTGGCCGGGCCTGCTCGGCTACATCAAAGGCCTGCGGTTCATCCATCTTGAGGCGTTCGACACCGACGCCGCGGTCACCGCCACCGAGCTGCTGCGCTCCGGGCACTCCTGGGCCGCCGTCCACTCCATCCACGCCACCCGGCCCTGCGCCGCCCACCCCATCGGACGCTTTCTGCTCACCCTGACGTCCAAGGCGTACGCGGGCGCCGGCGTCCAGGCCGTCCACCCCGGCCAGTAGTTGCTGCGGCATCCCACGACGGTCTGCGGCCACCGCATGATCTCCATGAGATCACCAGAGGATGCCGTGCTGGTCCGGAAAGCTGTTCGGGTGACTGGTCTACCATCTGACGGGACGAGACGTACAGGGGGGCGCATGCGGCCAAAGCGGCTGAACGTCAAGATCACCATTCCGTTCCTGGGGGAGATCGGCGGTGAGTGG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGACGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCAACGTGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 2996-3394 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000137.1 Streptomyces sp. NWU339 Contig_115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 2996 33 97.0 28 .............................A... TCGGCGGGCAGCGGAAACTGGACCTCTC 3057 33 87.9 28 ............................ATT.G CCCTCGCATTACCCACCAGTCCGGATCG 3118 33 100.0 28 ................................. CCCACGAGCCGATCGTCCTCGCCCGTAA 3179 33 90.9 28 .............................G.GC TCGACCAGATCCTCGATGCGCTGCGGAC 3240 33 97.0 28 ...............................G. CCCGCGCTGGTCCGCCCCGGACGCGCCC 3301 33 90.9 28 .............................AAA. CAGCCGAGGACTGGGGCACGGAGCAGGA 3362 33 87.9 0 ................T.A............TT | ========== ====== ====== ====== ================================= ============================ ================== 7 33 93.1 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCA # Left flank : TCCGTGCGCGCCGGGACACCCCCGCGTTGGCGGGGAGGACTGCGGCAGCACGTCGTCGAGGTAGGCCTGCACCGGAACACCCCCACGTCGGTGGGGAGGACTCCCACCACTGGCCGGGCAGCCGGTCTGCCGCCGGAACACTCCCACGTCGGTGGGGAGGACGCGTCCTGCACGGTGCGCAGCGTGCGGTCGGCCGGAACACCCCCACGTCGGTGGGGAGGACGCGGCGGGGGTTGCTGCGGCGGGCACCTTGAGCGGAACACCCCCACGTCGGTGGGGAGGACTGGGCGGGGTCGCGCACGAAACGCAGGTCGCGTGGAACACCCCCACGTCGGTGGGGAGGACGGCGGCGCGTCGATGGGCTACTGGCTGGCGGGCGGAACACCCCCGCGTCGGTGGGGAGGACCGTGCCGCTCTCATCGCGTCCAGTTCGGCGTGCGGAACACCCCCACGTCGGTGGGGAGGACGCGCGCCTGGGAGGACGGGCTCGCGGCGCTGAG # Right flank : TCCCCGGCGACCGCCGCCGCTTCGACTGGTGTGGCAACCTTCCGTGAAGGGTGCCGGTTTACTCAGGTGCGGTCCAGCAGGGAGTGCAGCAGGGCAATGACTGCGATGCCGACGAAAAGGGCGGCCCCTGCTAAAGGGTGGATCAGGGCGAGGTAGGTGGCGCCCGCCCCGGCGAGTAACAGGACGGTGGTGCGCAGGTCGAGTTGGCCGTTCATCCGGGGTCCTTCGTTCGGGGCGGGTTGTTCCTGTCAGGCCCCGCCGCAGAGGGTGTCATCTCCGTTTCGATGGCTGCTGTCAGTGCCGACCCTTACCATTCGCGCAGATACCTCCACTTGGAGTAAGGAACGCCGATGCCCAAGCGCGTGTTCGTCAGTTTCGACTATGACTACGACAAGAGCCTCAAAGAATTCCTGATCGGGCAGGCCAAGAACCCTGACTCGCCCTTCGAGGTACATGACTGGTCGATCAAGAAGGCGTCGTCTGACTGGAAGGTCAAGGCC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33730-33580 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000061.1 Streptomyces sp. NWU339 Contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33729 28 100.0 33 ............................ CAAACCGGACCCGTGCGCATACGAGGCCGCCCT 33668 28 96.4 33 ...........G................ CGGCACCAGGGCCGGGTCGGTGCGCACGTTGCC 33607 28 92.9 0 .......T.................G.. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 34 GTGCTCCCCACACGCGTGGGGGTCTTTC # Left flank : TCCACGGCCCGCCACAGGTGCCGCTGCACGCCGTTGATCTTGACGAACACCTCGTCCAGGTGCCACTTGTCACCAGGCCCCGGACGGCGCCGACGTAGCGCAGCGGCATAAGCCGGACCGAACCGGCGCGTCCACTGGTGGACTGTCTCGTGGCTGACCTCGATGCCGCGCTCGAGCATCAGCTCCTCGATGTCGCGCAGGCTCAGGTTGAAGCGGTGGTACAGCCACACGCAGTGGGAGATGACCTCCGGAGGGAAGCGGAAACCCCGGTACGACGGCGTCACCACGGACAGTCCCTCCAGCGATTCGGCAAGACGGATGATCATGCCGCCCGAGAAGGCCACCACTCAACCTGACAACGCCGGTAGGGCAACTCACCACACTGCGCTTGAGCCTCTCACTCACTCGAAGCCATAGAACACAGCGCCGTCAGCACCGCCAACTCGGCTATACTGAGCAGAAATCGGCCTGCTGATCTTCAAAACTGCAGCTGAACGAGG # Right flank : GGAGTAGTGGAACCCGGCGACCACCCGAGGCGACACTCGGGCCACCGGCCTGTCCACCCTCAGCCCAGCACACGAAACGGTCCGCCGACTCCGTCGGCGGACCGTCACGAAACATCGAGGTTAAGAGCTCGCGCAGATAGGCGCGCGGTCATGGCCGGTGGGCGGGTCGGTTGTCCCAGCGGTGGGTGCTCCAGGCGCGGCAGATGAGGCTACGCACGGTGATGACGGTGTCGGCGAGGTCGAAGAAGGCGTTGCTGACGTTGATGCGGCGTTCGTAGCAGCGCGCGAGCCGGTGGAAGGCGTTCTGCCGCGCCTAACTGCGCGAGCTCTAACGGGGTGGGGAAAAATATCCGTCCAACCGCAACACCAGCTCGTCGATCTCCGCTCCCCGCGCGTTCGCGAAGCCCCGGTCCTCACCGACGACCTTGAAGCCGCACTTCTCCAGGACCCGCACCGATCCGGTGTTGTCCGCCGCCGCCCGGGCGAGCAGCGGGCGTTCG # Questionable array : NO Score: 3.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACACGCGTGGGGGTCTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 6870-5564 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000082.1 Streptomyces sp. NWU339 Contig_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6869 28 100.0 33 ............................ GCTGCACACCGACCGCGCCCAGGCCCTCCTCAT 6808 28 100.0 33 ............................ CGGGACTTCCTGCGGTACGGGGCGGAGCTGCAC 6747 28 100.0 33 ............................ CCGGTTCTTCGGCTCGTCGTCGTCGGCCGCGGC 6686 28 100.0 33 ............................ CAGGAGCTTCCAGGTGAGCGGGCCGGGCAAACC 6625 28 100.0 33 ............................ ACCCGTCCAGCAGCCTCGGGTGCTCGCCCAGGT 6564 28 100.0 33 ............................ GATCACCGGGCGGCCCAGGATGGTCATCGGCGG 6503 28 100.0 33 ............................ TCCTTTGGATGCGTGCTGGCTTCTCCTCTGCCG 6442 28 100.0 32 ............................ GTCCAGCCGTCGCGGACCTGAACCCCTTCGAT 6382 28 100.0 33 ............................ GCTCGTCGAGAACATCCGCAGCGACGTCGCAGC 6321 28 92.9 33 ...........A..C............. CGCGAACGCGTCACCCTGGTCGATGAGGAGGTC 6260 28 92.9 33 ...........A..C............. CACCTTGGGCAGGTTCATGAACTTGCGCCGCAC 6199 28 92.9 33 ...........A..C............. CCCGTTCGCTGCGCTGCTGATCGGGGTGGGTGC 6138 28 92.9 33 ...........A..C............. CCTCACGTTCGATGACGTCGTGAACCCCGCCGG 6077 28 92.9 33 ...........A..C............. CTCGGCGGCGTCGCCGTGCGGCTGGGTGTGCCG 6016 28 92.9 33 ...........A..C............. CGCGAGCGGGACGAGCTGCTCGCGCAGGACGAG 5955 28 89.3 32 ...........A..C............T CCGATGACCAACACCCCGTGGACGGGCCCTTC 5895 28 85.7 33 ...........A..C........A..C. CAGGGCGTGTCACGCGGCGAACGTCGGCAGGGG 5834 28 100.0 33 ............................ CTGCGCGACCGCATCACCGCCGGCGCCGACGGA 5773 28 96.4 33 ..............C............. CCGCCCCAGTCCTTCGCCTTGACCGACCGCGGG 5712 28 96.4 33 ..............C............. CCGACGATCTACGGCATGGAGCTCAACCCGGGC 5651 27 89.3 34 .....................A.G.-.. CCTCCTCACAGCGGGAGTCCGGGCACAAGGGGGA 5590 27 82.1 0 ..-.C.........C........G..C. | ========== ====== ====== ====== ============================ ================================== ================== 22 28 95.3 33 GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Left flank : CCGGTCGGCCGGCAGCCGCCCCCACGTCAGCCCCGCCGCCAGCACCGGCGCCGCCTCGGCCGCATCCACCGCCTGGAACGCCGGGCACGCCTTCCCGCAGTCGTGAATCCCGCAGATCCACATGAACCACAACCGGCCCCGGCCACCACTGACCTCGTCCATCCGCCGACGGAACCCAGCCGACAGGTAGTGGTCCCACATCACCCCCGCCACCGCCGCCGTGTCCAGCAGGTGACCGAGCAGCACATGCGTCCGCCCACCGTTGCGCGCCGCCGACTTCCCCCACAGCCGCGACACCCGCGCGATAGCCTCCGGCGACAGCCCCATCGCCCTCATCAGCTCAACGATCGAGCACTCACCGTCCACCGAACCCCCCAAGCATTTGGTGCCATCGGCACGATAAGCCCCGCCACTGACAATCACCCGGGGCGAGGAATCAGAGCCGAACCCAGGGGAATGAAAAACCTGGCTCTTGCTAGCATCACCGCAGCTCAACACGT # Right flank : CGACTTCCACCGGGTAGGGCGTGTGCCGGATCTCGGGCTTGGCCAGCGCTTTGCTGCGCTGCCCGCCGTGAGAGCGTGGGACGAGAAAAGGCCCGCACCGGATCGGTGCGGGCCAAGTAGGACAGCCTGCCCAGCACTGACGCTCAGCAGGGTGCGAAATCCTGATGGCTTAAGACGGAATGACTTCGCCGAACCAGGGCGCCCCACAAGGCGCCTACCGAGACGCCTCACAGGACGTTCTGCAGGGCGCCTCATCCGGTGCCGGACACCGACCTTGGTCAAGGAGTCTGACCTGCTGGTCAAGGGGTCCGGTCAAGGGAGCCCCGGACGCCGACAACTTCCCTACGACACCCCTTCCGGTGTCACCGCGATGCCCGGCCCGAGGTTCCGCCGGCCTTTCCGGCCGGCCACGTCCTGGTGCTCGGCTTCCCCCAAGAGTGCACCCGGCTCGGCTCGTTCGACGGGCAGAAGCCGCAGGCTCGTGTCCGTCGTCGGTGTGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTTGCTC # Alternate repeat : GTCGTCCCCGCACCCGCGGGGGTTGCTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17362-19341 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000082.1 Streptomyces sp. NWU339 Contig_213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17362 28 100.0 33 ............................ CGGCCAGTGCCGCTCTACCCGCTGCTCGAAACG 17423 28 100.0 33 ............................ CGGGGCGGGGGCGGCTCTGGTGGGGGCGCGGCC 17484 28 100.0 33 ............................ CTCTTGCCCCGAGGTGATCAGTCCGCTTTGGCT 17545 28 100.0 33 ............................ CCGGTACTGGCCGGGCTTGCCCTGCTGCACCAG 17606 28 100.0 33 ............................ CGCGCACCCGGGTCGGGGTTTCGCAGCAGGATG 17667 28 100.0 33 ............................ CGCCTGACCCCTGTGGGCTCGTGCCGTCCGGTG 17728 28 100.0 33 ............................ TCAACCCGGCGGAGCGGTACTACCGGCGCGGTA 17789 28 100.0 33 ............................ CCGCTGCCCCACACCCGCTTGGGCACCTTCACC 17850 28 100.0 33 ............................ TGCAGCCCCTTGGAATGCGCTTCCCACGCATTC 17911 28 100.0 33 ............................ TCGACTGGTCGACCAACGCGACGAGCGACCCAA 17972 28 100.0 33 ............................ GAGCTGGGGTTCGAGATCAGAGGGTGACCATGC 18033 28 100.0 33 ............................ CCGCTCGGCCCGCGCCTCGGACTGCTGAGAGAT 18094 28 100.0 33 ............................ CTCCAGCAGGCGCACAGCGTTGTCCGGCGCAGG 18155 28 100.0 33 ............................ CCCGGCTCCCGGGCTATCTCCGCCCGAGAGAGC 18216 28 100.0 33 ............................ GACCCTGGGGGAAACCCTCACGCCGGTCATCGG 18277 28 100.0 33 ............................ CGCGGCAGCACTCCTGCGGCAGCTCTCCACCTA 18338 28 100.0 33 ............................ CGGGGCCCCGACCTGCGGAAACGGAAGGGGCCC 18399 28 100.0 33 ............................ CCCCGAGGCGCTCATCCGGGAGGGGCGCGACTG 18460 28 100.0 33 ............................ CTCGCCCGACCCCGAGGCGTCGGTGGCCGCGTT 18521 28 100.0 34 ............................ CCTCGGCTTCGGCTGCGGCGCGCAGCTCGGCCGG 18583 28 100.0 33 ............................ CGCGCCGATCATCACCGCGGCCCCGTCCTGAGT 18644 28 100.0 33 ............................ CCTGGGCCAGCAGATCGACGGACTCACCCGCGC 18705 28 100.0 33 ............................ CACACCCTGCGCTACGGGCCGCGCGGCATCTAC 18766 28 100.0 33 ............................ CGCCTCCCGGTACGCCGGCCGACCCGCTCCGCG 18827 28 100.0 33 ............................ CGAGGACGCGGTGCGGCTCTGGCAGGAGTTCGA 18888 28 96.4 33 ........T................... CAACGACGACGGCGTGATGGTCGCCCTCGTCCC 18949 28 100.0 33 ............................ GCGCAGCCACGGCAAGACCATCGGATACCGAAC 19010 28 100.0 33 ............................ CTGCGCGCCCACCAGGAGCAGCAGCAGGCCGAC 19071 28 100.0 33 ............................ GTACCGCAGGATCGGCGGCGGTGCGGACATGGT 19132 27 96.4 33 .....................-...... CCTGACCATCCTCGACCTCATCTCGCGCGGCCA 19192 28 100.0 33 ............................ GGAGGGGTACCGCATCTACAAGGCGCAGGGGTG 19253 28 100.0 33 ............................ GACGTACCACCCCGTACATGAGGCCATCCGGCT 19314 28 92.9 0 ...................A......C. | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.6 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CTGCCGGACGAGGACCTCGGCGCCCTCTGGGACGACGGCGACACCATCGTCAGCGGCGGCCGCAACTGGAGCGCCACACACCACCTCGACGTCATCCCGGAACCCACCGACCCCACCCCCGCGGGGACGGCCCCGTGAGCGCCGGGACGACCGTGGTCGTGCTCATCGCGGCCCCACCTGGGCTCCGGGGACACCTCACCCGCTGGTTCGTCGAAGTGGCCGCCGGCGTCTACGTCGGCAACCCCAATCCCCGGATCCGTGAACGCCTTTGGAGCGTCCTCGCCGAGCGCATCCACGACGGCCAGGCCGTCATGATCGAACCGGCGGCCACGGAACAGGGCTGGTCCGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATAGCCCGTCCGCGCCAGAGCGGACAGCCCTGGCGGCCCGCGAACGAGGTGAAGCAAAATGGCATGATCACCTGACAACACCGCAGGTCACGAAGT # Right flank : CACCCCTGCCGGAGTCCGGTCAAGGGGGCGCCGGGGATCTGGTGGGGATCGCGGCGACCGAGCGACACGGCGGTAGCCGCCTCACCAAGATCACCACCCGGCTTTTCCCTGCGATGTGTCGGGTTTGTGTCAGTGGAGTGGTCGGCAGTCGTCGGCGGCTGCTTTCCGCCGTCTTTGTGCTGGTCATGGTGGGGATGAGTGACGGTCCGCTGCTGACACGGGCAGCGGGGTTCACTGACACGAGGCCGAGATATCGCACGTCGGGCCCCGGTGCCCGGGTCACCGTCCGGTGAGCTGCCGGGTGAGCCACGCGTTTGCCTGACGTCCGCTGCGGAGCCGTACGACGTGGACGCCCAGAGCGGCCGTCTCGGCGACCTGCCGGGCGTAACGGGGGCGGCCGACGACCTGTTGCGACAGGCCGTGGATAAGCGCGCGGCAGTTCACTGACGACCTCAAGCGCGGCCGCATCCCCCGCCAGGAACTCACCCGCAGCCTCGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 251-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000045.1 Streptomyces sp. NWU339 Contig_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 251 28 100.0 33 ............................ GGCTGCGCGGGAGCGTCGTACGGGGCGCTCGTC 312 28 100.0 33 ............................ GCTCTGCGGCCGGTCGGTTGGCCTTCGCCCTGC 373 28 100.0 33 ............................ GGAGGCGAGTGTTCGTGCTCATCGCGGGTCTCC 434 28 100.0 33 ............................ GGGGAGGGGTCCACCCATGGCCCGGAAGCTGAA 495 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : CCGGCGCACCGMTCGGCAGATCTCCGATCACCGACAGCACCGTCTTGACCCCGTTCGGCACATTCCGGTTGACCTGCACCGCACCGTCGTCCTCGACCACGGCGATCTGCGAACGCTTGCGGTGCACGTCGATACCGACGTAGACAGACATTGAGGGCCTCCTTCCCGAGCCCGTACATACCCGGACAGTAGGTACCGCCGGGCTGAGCAGGGAAGGGGGCCCGGCCCTCATAGGGTCAGGTCAGAAAGGG # Right flank : CGAACATCCGGGCCGCGATGGGTCTCAAGGGCTAGTCCCATCCTCCGCACATGACCGGTTCGGATGAACTGATGATGTGGCCGGTACTTCTGTGGGGACGGGTCGTTGGGTAGAGCGTGCCGATATCTCGTTCGCGCCGTTCCCGGGTCCAGCGTCCTCGCATGGCGGTGGAGTTGGCTTCCGTGGTGGAGAGGCGTCTGGGCGCTCTGCCTGCCTCTGCCGAGTTTCTGCGCCGGCTGGACGTGGCCGGGATCATCGACGAGCTGTGTCCCGTACGGGATGTGGCGCATCTGACACACGGGCAGGTCATCGAGGTGCTGGTCGCCAACCGGCTGTCCTCGCCGGCCTCGATGGTCCGCGTGGAGAACTGGGCCCGGACATGGGCTGTGGAGGAGGTCTTCGGCGTAGAGCCCGAACTGCTGAACGACGACCGGCTCGCCCGCGCGCTGGACGCGATCGCTCCGCGTCTGGAAGAGATCACCGGATCGGTCGGCGCGCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2329-2785 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000045.1 Streptomyces sp. NWU339 Contig_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 2329 28 100.0 32 ............................ GTGAAGGCGCTGCGGCAGAAGGCCGCCGACTC 2389 28 100.0 33 ............................ GCTCACGCCCCTCACGGCGGCCGCGCCGTTCAC 2450 28 100.0 33 ............................ GTCGGCTCGGTCCCAGCCTTGGGTGGTCACGAG 2511 28 100.0 36 ............................ GCTCACGCCCCTCACGATGCGAGAGGCCCGGGAAGC 2575 28 100.0 33 ............................ GTGACAGTCTGATCGCACGCCGGGACGCATCGG 2636 28 96.4 33 ..................A......... GTGGAGCACGTAGGACGTGGTGCCGTCCTGCCA 2697 28 92.9 33 .........A.....A............ GTTGATCTCGGGATAGATACACACGTAGCCGGA 2758 28 96.4 0 .C.......................... | ========== ====== ====== ====== ============================ ==================================== ================== 8 28 98.2 33 GTCTTCCCCGCCGACGCGGGGGTGTTCC # Left flank : GACATCCTGGACGCCCAGGCCGCCGCCGACGGCTGGTACGCCCTGGTCACCCGCCTTACCCCCGAGCAGGCCGACGCCGCCGAGGTCCTGCGCCGCTACAAGGGCCAAGGCGTGGTCGAACGCCGCTACCACGACTTCAAAGGCCCCCTCGCGGTCGCGCCGGTCTTCCTGGAACACAACCGGCGCATCGCCGCCCTGATCACCGTGATCTGTCTGGCCCTGCTGGTGTTCTGCCTGATCGAACGGCAGGTACGCCAGGCCCTGGGCCCCGAACCGACCATGCACGGCCTCTACCCCGACAACCGCAGGGTCCGCCCCACCGGCCGCATGATCCTCTACCACCTCGACAGCCTCACGCTCCGCCCCGGCACCGCCACCGACCCGCCCGCCATCCTCGTCAGCCGAGGAATCCAGGCACACCTGCTCGAACTCCTCGGCATCGACGAAACCCGACCCCGCTGGCTGGAGACCTAAAACCCCATGTGCGAAGTCACCGGCTA # Right flank : CGTGAGTCAGCGGCTACGCATCAGGCAGTCGGGGAACCGGGCCCCTTGAGGGTGCTGAGGAAGGCGGTCCAGGCGGTGGTGGGGAAGCGGAGGACCGGGCCGTGCGGGGTCTTGCTGTCGCGGACGGGGACAACGGCGGGGAGGCCATGGGCAACCTCGACGCAGTTGTCTGCTCCTCCGTCGCTGTAGCTCGACTTGCGCCAGTTAACGGCACCAAGATCGGTTGTACGGCTCATGACCGGAGCTCCTCCAGGACGCGCTCGATGAACATCACCGAGTCCTGTGGCGTCAACGCCACATCTCGCACCCGATCGTAGGCCAAACGGAACTTATGGATATCGTCAGGCTCTTCGAGCAGTTCGCCGGACGTGTTGCCTTCCAAGTAGGCAACAGAGGTTCCGTCAGGTTGCCACAACAGGTGGAGTGAGCCCCTGTTGAGCGGGTGAACCCCCGCGCTGAACGGCAGTACCTGGATGGTGATCGTGGGTTGGGCTGCCGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCGACGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 156367-156029 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000014.1 Streptomyces sp. NWU339 Contig_173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 156366 33 93.9 28 ..............................A.A CACGCCGCGCCGTGTCGTCCTCGAGCCC 156305 33 90.9 28 .............................GAC. CGGCGGTACGCCCACTGGTCCAGCTCGG 156244 33 93.9 28 .............................G..C CGGCGCCCGCCGAGACCGCGCTGACGTG 156183 33 90.9 28 .............................CAC. ATGAGATCGCCCACGATCCGCAGTTTGC 156122 33 100.0 28 ................................. GCAAGGCGTTCGAGGACGGGCGCCTCGA 156061 33 87.9 0 ...........................G.TC.C | ========== ====== ====== ====== ================================= ============================ ================== 6 33 92.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGATGG # Left flank : GTCCTGGAGGGCGGAACACCCCCACGTCGGTGGGGAGGACGCGCGGGCAAGGTGAAAAAGCGCTATGTCTACAGGAACACCCCCACGTCGGTGGGGAGGACGTCGAGTAGGGCGGCGAGGTCGCGGCGGTCGGCGGAACACCCCCACGTCGGTGGGGAGGACGGCCCGGTCGGGGACGGGGAGTTTGTCGAGGTCGGAACACCCCCACGTCGGTGGGGAGGACGCATCGAGCACCGCGCCCAGGTCCCGGCGCAGCGGAACACCCCCACGTCGGTGGGGAGGACGTTTTCTCGGCGGACGCCCGCAGCTACCCGACCGGAACACCCCCACGTCGGTGGGGAGGACGAGAACCGCTCGAGCCGCTCGAGCGGGCTCGGGGGAACACCCCCACGTCGGTGGGGAGGACGCCTCGGCCAGCAGCGGCCGGGACGCGGTCGACGGAACACCCCCACGTCGGTGGGGAGGACGCTTCCCGAGCCCGCGTCCGAGGCCGCCGTCGT # Right flank : TTCTCGAATCTCTGTGGAAACCGGCACCCGATCGGAGGGGGCCCCGGTCTGTGCGTCGGTCTGCTGCCAGAGACGGCGGCCAGGGACGATACGGAGCATGAGCACCTCTCGCCCCCTTGCTGACCCAGCGGGAAGCCGCTGCCGCGTGTGGCGTGAGCCGTACGACGATCCGGCGCCGCCGGGAAGCCGGCGAACTGCCCGGGGCCGTGCTCGACGACGACCGCGGCTGGCTCATCCCGCTGGAGGACCTGCTCGCCGCCGGCTTCCGGCTCAACGCCCCCTTCCCACCCGATGAGAAGGGAGTCGGCGACCCGGCGCCGGCCCAGGCGCAGCAGGACCCGGTCGGCACGGACGCGCTGCGGGCCGAGCTGGACCGGCTGCGCCACGAGCATGCCCTGGCGCTCGCCGGCGAACGCACCGCCCGCGCCCTCGCCGAGGCCAGGCACTGCAAGGCGCGCCTGGACGAACGCGCCGCCTCGCATCGAGGACCTGCAGCTTCC # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGATGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 156400-157708 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000014.1 Streptomyces sp. NWU339 Contig_173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156400 29 100.0 32 ............................. TCGACCGCGTCCCGGCCGCTGCTGGCCGAGGC 156461 29 96.6 32 ............................C CCGAGCCCGCTCGAGCGGCTCGAGCGGTTCTC 156522 29 100.0 32 ............................. GTCGGGTAGCTGCGGGCGTCCGCCGAGAAAAC 156583 29 100.0 32 ............................. CTGCGCCGGGACCTGGGCGCGGTGCTCGATGC 156644 29 100.0 32 ............................. ACCTCGACAAACTCCCCGTCCCCGACCGGGCC 156705 29 100.0 32 ............................. CCGACCGCCGCGACCTCGCCGCCCTACTCGAC 156766 29 96.6 32 ............................T GTAGACATAGCGCTTTTTCACCTTGCCCGCGC 156827 29 100.0 32 ............................. CCCTCCAGGACAAGAAGAGGGCCGAGGCCGAG 156888 29 100.0 32 ............................. CTATGTCGAATCTGTACCCGGAGACGGGTACC 156949 29 89.7 32 .........G......C.......C.... GACCCGGTCGAGCAGAGCGCGGCGGCTGTCGC 157010 29 86.2 32 ........TG......C.......C.... ATCTGGGATGCCTCGGTCTCCGGCAACCCGGG 157071 29 93.1 32 .........G......C............ CCGACCGTGGACCTGTCCCGGCTCGTCGCCGC 157132 29 93.1 32 .........G......C............ CCATGTCCGCCGCGGCCAAGTCCCAGGACGAG 157193 29 89.7 30 ...T.....G......C............ GCCACCGATGCGGTCAGTGCCTCGCAGTCC 157252 29 89.7 32 C.G......G................... CAGCCGGTCTGGGACCAGGAACCGGTGCGTGC T [157258] 157314 29 96.6 32 ...............A............. CTGTTGCCGCCGTACTTGGCCTTGGCCTTCTC 157375 29 100.0 32 ............................. CTGACCAGCTCGAGGAGGCGTTCCCGGGCGGT 157436 29 100.0 32 ............................. GTCACCTCGTCCACCACACCGATGCCCAGCAG 157497 29 82.8 32 ...T.....G......C....A..A.... ATGGCGTCCTGGTCGTCCGGCGCAGCGCGTAT 157558 29 75.9 32 .........G....T.CA..AA..A.... ATGAGTCGGGGCGAGGTGCACCTGTCGCCCGG 157619 29 89.7 32 ...T.....G......C............ GGCGGGTATCCGCGGGCCAAGGTGCCCAAGGC 157680 29 89.7 0 ...T.....G......C............ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 94.1 32 GTCCTCCCCACCGACGTGGGGGTGTTCCG # Left flank : GCTGGGTCAGCAAGGGGGCGAGAGGTGCTCATGCTCCGTATCGTCCCTGGCCGCCGTCTCTGGCAGCAGACCGACGCACAGACCGGGGCCCCCTCCGATCGGGTGCCGGTTTCCACAGAGATTCGAGAAGCGACCGAACACCCCCGCGTCGGCGGGGAGGACTCGAGGCGCCCGTCCTCGAACGCCTTGCCCATCGGAACACCCCCGCGTCGGCGGGGAGGACGCAAACTGCGGATCGTGGGCGATCTCATCGTGCGGAACACCCCCGCGTCGGCGGGGAGGACCACGTCAGCGCGGTCTCGGCGGGCGCCGGCACCGGAACACCCCCGCGTCGGCGGGGAGGACCCGAGCTGGACCAGTGGGCGTACCGCCGCGTCCGGAACACCCCCGCGTCGGCGGGGAGGACGGGCTCGAGGACGACACGGCGCGGCGTGTCTTCGGAACACCCCCGCGTCGGCGGGGAGGACACGACGGCGGCCTCGGACGCGGGCTCGGGAAGC # Right flank : GGAGTCACCTCCTGTCCTGCTGGGCGCACGAGAAAACCTCACTGACAACCGACCCGGCGCCCGGGGTGCCCTGGACATGCTCAATCGAACGAGTCACCATCGTCGGCTTCCCACATGTAGAAGTGGCTGTCGTCTTTGTGCTTCCACTCAGGCCAGAGATTGCGTGTGTCCTCAACCCTGGCGCTTCGTGCGGGCAGTTCCTCGTCTCGGAGAAAGGCACCGAGGCAGGCGATGGCGTCGGCGCACAGTTCGATGATGGCGACCCGCCGTTCGCCTCCTGTCCGCCTGTCGTCGGGCGGGGAGAGAGGCATGTAGAACGTGTCTTCCCTGACGCGGGTACGTAGCTTGGTGTCCGGGATGCTGTGTAGCAGGACTTGCACCTTCGCAATGCGGTCGTGCAGCGAGCGGAGGCGTTGTTGCCACTCATCCCCGTCGGGCGTCCTGGCCTTCCGGAAATCGCGGTGGATCTCCAGCAGTTCAGCCAGTGCGGCTTCTGCGGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGACGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACCAACGTGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 9765-11014 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFRK01000057.1 Streptomyces sp. NWU339 Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 9765 29 100.0 32 ............................. GCCGGCGCCCCGGCCCACCGGAAGGACCGACC 9826 29 100.0 32 ............................. GTCAGGGAGCTGGACCAGGCCGCGCAGATCAT 9887 29 100.0 32 ............................. CTCGCCGGGATGGGCTACGGCGACCTCGCCGC 9948 29 100.0 34 ............................. CGCCGACACCGGCCCCCCCCCGCATAGGTGGGAG 10011 29 96.6 32 ............T................ GAGACGGCCGGCTGTGTGTCGCGGGGGTCCTT 10072 29 100.0 32 ............................. CCGCACGGGCCGACGTCGCGACCTGTTACCTG 10133 29 100.0 32 ............................. TTCCGCACCACGTCTGCGAAGCGCCGGGTGAA 10194 29 100.0 32 ............................. GTCAGGGAGCTGGACCAGGCCGCGCAGATCAT 10255 29 100.0 32 ............................. TCCGGGAACTCCAAGCAGGCCGCCGCCCAGTA 10316 29 100.0 32 ............................. AACAGACGGGGCGTCGCCCCGGGACACGACGA 10377 29 100.0 32 ............................. GCGCTCATGGACGCGCAGCGCGCCCACAACTC 10438 29 100.0 32 ............................. CGGTTCGAGCGAGTGCAGGCCGACGCCGAGCT 10499 29 100.0 32 ............................. TACGGCGCCCGCCGCGATGAGACCGGCCACCG 10560 29 100.0 32 ............................. TGGCTGGCCATCAGCCTGTCCGACGGGTCCTG 10621 29 100.0 32 ............................. ACTCGTGCTGCTCTTGAGAAGCAGATGGGTGC 10682 29 100.0 32 ............................. TCGCGGACAGCCTGCCTGCGGGCGGCGGTCAG 10743 29 100.0 32 ............................. CCCCGGAACCGTGAGGCTCCGGGGCTTGTGGT 10804 29 100.0 32 ............................. CGACCCAGGACGTCGTACATGTTCATGAAGCC 10865 29 100.0 32 ............................. CGGTACCTCCGAGGTGTTCTGCTGAAGGCGAG 10926 29 100.0 32 ............................. CGTCGGAGGACCCCAGTCCCCGACGTCTGGAA 10987 28 89.7 0 ............T............-..T | ========== ====== ====== ====== ============================= ================================== ================== 21 29 99.3 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGTCCACGACATCCAAGAACTCCTCGACCCCCACGGCGACCGCGAGGCCCCCGACCCCGAGGAACAACTCGTCGACCTCTGGGACCCGATCGCCGGCCCCCTCCCCGGCGGAGCCAACCACGGAGCCGGCTCATGACGACCCACCACAGTCGCTCGGAGGTACAGCCGCCGTGGCCTCAATGATCGTCCTGTCCACCACTGCCGTCCCGGACCACCTGCGCGGCGCTCTCACCCGCTGGCTCCTCGAGGTCACCCCCGAGCTCTACGTCGGCACAGTCTCCGCCCGGATCCGCGATGAACTCTGGGACTCCGTGGCCGCCTGCGCGGGAGACGGCACGGCGGTGCTGGCGTACCCCAGCGACAACGAGCAGGGCTTCGAACTCCGCACGGCGGGTGCGCGGCGTCGTACGCCCGTGGACTTCGACGGATTGACGCTGATTGCCTTCGGAAGAGAAAGTAAAGGTGCGGCAAAGCTGCTCTAACGCTGCAGGTCGGGAAGT # Right flank : TCCCCTGTCTTCCCCTGGCTGATTCCCTGTCCGTTCCTGTACGGGTATACCGGCTGGGAGTCGGCCGAAGAAGGCCTCAGGCTCCGCAAGTATGTGTACCGGCTCCCGGACAGAACGGGCTGAAGCCCGGGCCACGAAAGCGGCGCCCATCTGGGCGCCGCTTTCGTACCTCTGTTGTCTGGGGGTTGTTCTTCAGGGCCTTGTGCCGGGCTTGTTGTCGGGTGGGGTGCGATCTCTCGGTTTCGGGACAGTGGGGTGAGGGACAGTGGGGTCTGGGTGTGTTGTTGCTGGTGGGTGGCGGTTTCGGGGTGTGGGTTCACTGTCATGAGGGTGATATTTCCGGGGGGTATCGCTGTCGTGGGGGTGTTATCGCGTGCGGGGTGACGCTGTCTCAGTTTTGTGAGTTCTGATCCGCTGGCCGGTGGGTGGTTGGTGTGCTCGGGGTGTGGATCAGGAAGTGGAGCGCCCGGTTTCTGAGGAGTCGGGCCGAGCGGCTGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //