Array 1 35217-35446 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBA01000122.1 Nocardia amamiensis NBRC 102102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 35217 31 100.0 36 ............................... CGAAATGTGCGCCTGGGCGGCACGCCTGGACGCCCG 35284 31 100.0 36 ............................... GCCCGAACTGCTTGCGCTGGTGCAGGTCTGCGACGA 35351 31 100.0 34 ............................... CGGGCCCCCAGGAGGTTTGCGAACCGGCTGTCCC 35416 31 93.5 0 ........................C.....G | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 98.4 36 GTCCTCATCGCCCCTGCGAGGGTTGGCAACA # Left flank : TGTGCTCGCGCCGCGCTGGGATCAAACATCTCCTGAAACGGCCCGACGAACGACCCCCCGAGCCCGCGGTGCTTCGCCCGAATAGCCGCCCACCCGAACAGTGCCAACGGGGCGATGGTGGCGATCAGCAGTAACAAGTCCCCGCCCATACCCACGAGCGTACCAATGAGATCCTTCACTCAGCTTAGGAGAGAAGGGGCCAGCTTTCTGTTGGTCACCGAACCACATGGCCTCCGTCATGAGAGATACCGGCTTCCGAAACATCGCTACGACATGGCATGAACCAGTGAAGGTGCCCCAGTACCCCAGGGGTAAGTGTTCGCCGAGCGGAACGCTCGACCGTAGGCAGGCACTACTGCCCTGTCGGGCCAGTTCCTGCAGGGTCTCGACCAAGATCGATCAGCGACACGCCGCACTTTTAAGCGCTACCGGAGGTCTGCTGCAAACCCCGTATCCTGCCACCCGCGAAGAAGGCCTCCCACCAGCAGATTTACCCTGGG # Right flank : GCGTTGAACGCCTGCCCGGTGCCGGTGTACTGGATGTCCTCATCGCAAACACCACCGACGACACCGCGCTGGTGTGGCCGGTGAGAACGGCGGGCGACGGGGCGGGGTGGATGTGTGGGTGAGGGCGATCCCCGCTACCGCGGCGGTGACGGTTAGGGGGATGGCAACCGCGCCGCCGATCAGTAGTCGGCGGCGACCGATCCGCCGGACAGTGGAGGGCAATGTGGAACGCGGCGCGGTCCCGGTTCGACCATCGCTTTCGGTCCTTCCTGTCAGGAGGGCATCGACCGAGAGGTCGGCCGATACCGGCGCGGCGCTTTGTTTATCGGCACCGGGCCTTCTGAATGCGGGACCGAAGGTTTGGGCTTCGTCGGCAGGAAGCGGGTGATCTGTGTCGGCTGGCGGGGGTCTGCGGGCGAGTGCTAGGTTTCCGATGGTACGGGTGTTGCGTTGTTCTGGCTGCGGAAATCCCTTGGACGGCAATGCCTTTGCCAGGTGTT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9548-8986 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBA01000032.1 Nocardia amamiensis NBRC 102102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 9547 30 100.0 35 .............................. AGTCCTACTTCACATGGAAAGAGCTGTCATGAGCG 9482 30 96.7 36 ......................C....... TCGGTGGCGAAGTCGATTTGTGGTGTGGGTGTGGAC 9416 30 100.0 39 .............................. GCGTTCACACCGCTTCGCGAGCAGCTCGGCTCGGCCGCG 9347 30 100.0 36 .............................. ACCGTGAACCGGCCTCGGGTGATCGGGACGGTTTCA 9281 30 100.0 34 .............................. GCGAGACCGGCTCCGTGGTGAGTTCGCCCGGCAG 9217 30 100.0 36 .............................. TCGTTGTGGACGAGTTCGATGCCGCGGCCGCACAAA 9151 30 100.0 36 .............................. CCGGGCGGCGACGTGTACGAGGCCATCGCCCTGCTG 9085 30 100.0 38 .............................. GCGCCGGTCGGGAAGTCGCCGTGGACAACGGTGAGCGT 9017 30 83.3 0 ..TG........G...............GG | G,G [8988,9002] ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.8 36 GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Left flank : CAATGGATTCGCAGTCCACGGCTTCTTGAGCTGTTCGACCAGCTTCAGAAACGTCCTGTTCCATGCTCTCACCAGCGTCGACGCAACAGAGGGCCGAACACCACGGATACTGTCGGATTCGGGCATATGCGAGGAGATTGCGATGAAAACAGGCAGTAAATGGACACCTTCGCGAGGAAGCTTGCGTGGTTACGCGCCGAGCCAGTGGCCGCGTGGCCTTGGATAGTGGAGCCGCAGTGCTGTATGCGCGGCGACGCCATCGAATCCTCGATCAGCAAGCGATGGGGTAGGCGTGCGGGTGCGTAAACACCTTTAGTCCGAGCACCCGCTACTTCGGCCACCCGCAACAGCTCAATGGAATCCTCCAAACCCGCACATTCGACTCTCGACCAAGATCGATCAGCGACACGCCGTACTTTCAAGCGCTACCAGAGGTCCGCTGCAACCCCCGTATCTTGCCACCCGCGAAGAAGGCCTCCCACCAGCAGCTTTACCCTGGG # Right flank : CGCGGACGGAGTCGGAAATCCGCAATACGTTCCTGTCTCCCACGAGGATGTTTAGGCGATTGCGCGCAAGGCCTTGGCCCGGAGAAATCGCAAGACCAAAGAGTGAAGCCGAGAATATCCAACTGACCGGTATCCAAATGTGGGGGTGGGCGTATAACCAACTGAAGGTTGGTTTCTAATCGCGGCTCGGTTTGTCGGTGGGTGCCGGTACGGTTGCGCGTGCTGCTTCACGCTGGGGAATGGAGGTTTCGTGAGGCTCAGAGTTGGGGTATCCACATCGGCGCGAGAAGTGCCGTGGGACAAGGTTCTTGAACCCGGGCGTGCGGTTTATTCGTTGTTGTCTGCTGCTGCACCGGCGTTGGCGCGACGTCTTCATGAGCACGGTTGGAGTCGGCACGGGATGGTGCCGTTCGGCTATTCCGGTCCTGTCTTTCCGCACGCCGGGAAGTGGCGCGGGGTGTACTCCGCGGGTGGCCGGGGGTATCTGGAGTTGGGCAGTC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 70632-70903 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBA01000004.1 Nocardia amamiensis NBRC 102102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70632 28 96.4 33 ..............A............. CCCTACCGGCTTCTTCTTCAACCGCGACGTTCC 70693 28 100.0 33 ............................ CTCACGACCGCGCGAGCGGAGGTGTGGAATTCA 70754 28 100.0 33 ............................ CGCTTCAGGACCGGACTTCTCCGGCCAACTGCT 70815 28 85.7 33 ....G.....A..GA............. CTGGCCGAGGTCGTCGTCGATCACACCGCGCGT 70876 28 92.9 0 .............GA............. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : AGGAGTTCTCATGATGTCCAGTGAAAGCCAGCGGCAGGCACCCATGCATGGGATGCCGAACTGACCGCCGCCTTCGACATCCTGCTCGGCGGAAAGCGGCCGACGACGGCTCTGATCGGCACCCAACTGCGGATGCCCGCGCTGCTGGAGGTAGTGGTGATGGTGCGGCAGATCGGGCACGGCGCGGCGCCACACCGCATTCAGCGGCCCGTGCGCCGCGCGTGGGCATGGCGACGAGGTACACGCACTGGGACGGCACGAACTGTTCGAGGGTGAACCGTTCGGGCAGCGGCTCGATGCCGGGGCGGCTGTCTGCGCGGCGGGGGTAGTGCAGCCCGTCGTCGGAGACGAGGCGTGTCAATGTGCGACAGGAAGGCTTACGGCTGGATGGCGTAGCAACACTCGATACAACCGGGCGGCTAACAGCAGTACCATCAACGGTCGAACCGAAAGTGAATGAAAATGACCCGATCTGCTGAAGAATCCGCAGGTTAGGAAGT # Right flank : CCTCGATCACCACGTGGGCCCGGGCGTGAGTTCCAGGCGCAATCCGGGCCGCCAGCCCAGTTCGGTGAAGGCGTGCTTGTCCACGACACGGCCCGTCTCGCCGACGGTGCACATGCCGTAGATGATGCTCTGGTCAGCGGTCCGCACAACGGGTGTCGCGGAGAGCTGTGCCTGCAACCGCGACTGCGGTGGAACGACAGGCGCGATCACCGGCAATCACCCCGCCAGCAAACATTTTCGAGGCCGCCGAAGCGGCGGGATCCGGCAGATACGCCAAAGATCGGCGCAGGTCAGAGGAACGATTCACTGGTGATCCTGCGTGTGTTCGAGTGCACTCGCACACACGGCACCGATAGTCCAACAGTTCCGTTGGGACTCTGTGCGCGAGAGGGGACTTGGTTACCGATTCGGGCCACCGATGGGGTGGATCCGTGCGGAAGACACCTCTAAGATAGATCGCTGACTGGTAACCGTCAACTTGGATCTTCGGCCTGTATGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2034-3474 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBA01000364.1 Nocardia amamiensis NBRC 102102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================== ================== 2034 30 93.3 34 .........G.........A.......... CGTACCCAACCCAGAGAAGCCGCGTCCATGAACC 2098 30 100.0 39 .............................. CTGGCACTCGGCTGAGGAGGCGGTCGCGGCCGGGCTCGC 2167 30 96.7 39 ........T..................... GGCTCGTGCCGAAGCGGAACTGAACGCCGCGTTGGGTCT 2236 30 100.0 38 .............................. GCGGTTCGCGTCCAGGGTCTTGGTGCCGAACAGGATGT 2304 30 100.0 35 .............................. CTCGCCGGTTGGCAGGCCGCACAGGGCAAGTCCTT 2369 30 96.7 37 ............A................. CGGTGAGGACTCCGTTCGGATGGCGGGACAAGTCCGC 2436 30 100.0 36 .............................. CCCGACCGCGTGTCCGGCTGACGTGCACGAGTGGAC 2502 30 100.0 38 .............................. CCGCCGTGCTCCCGATCCTTCCGCAACGCTTCATCCCA 2570 30 96.7 39 .................A............ CTGTCACCAACACCCGGCTACCCGCAGGCTGCCAGGACT 2639 30 100.0 38 .............................. GTCCAGCCAGCCCTGCGCGACCGCGGTGCTCGATACCA 2707 30 100.0 36 .............................. CCTGACGCGCCGCGCGGTGGCCGGGTGGCAGGCCGA 2773 30 100.0 38 .............................. CTGCCGAGCACTATCGACACCTCCGCGCTGGGCTACAA 2841 29 96.7 35 ................-............. CTGACCTTCCGCACGGTCGCCTGTGCCCAGCGCAG 2905 30 100.0 39 .............................. GGGGGTGCTGTGCCACCACACCGCCGGAGGCGGCAGCCA 2974 30 100.0 37 .............................. CGGCGATTCCGACCGCGCGGGACTGCGTGCCCGGCGG 3041 30 96.7 39 ...................C.......... ATTGATGGATTACACCGTCATCGCGGCACGTGGCGGCAT 3110 30 100.0 36 .............................. TCGGTAGACGCCGTTGTTGCAAGTGGAGCAATGCAT 3176 30 100.0 38 .............................. TGGGCCTCGCTCATGCGGGACGTGCGTGTGGTGATCAT 3244 30 90.0 102 .............A.....C......A... AGGGATCACCGATCACCGGGCCGTGCAGGTGTCCAGTCTGTTGCGAACCCTCGGGTCGATGAGAACCAGCCTCACCCACAACATCACTTGATCGACTGAGAT 3376 30 86.7 38 ...........GG...C......C...... ACCGGTCCGCGGCGGGAGGCGGAGATCTACAGCTACAC G [3402] 3445 30 86.7 0 ...A.A............A....C...... | ========== ====== ====== ====== ============================== ====================================================================================================== ================== 21 30 97.2 41 GTTGCGAACCCTCGCAGGGGCGATGAGGAC # Left flank : CGGGACTTGGCGCCGGTGCGATTCGCCCGGCCAGGTACCCGGCGAGTTCAACGGCCATGACTTCCCGCGTCGCCGTGTTGATCGCGTCGACCACCGCGCGGACAAGTGCCTGTTGGTCGGCGGGTCATCAGCTCGCCGTCGGCAGTCATTCCTTGCTCTGGGTGGCGTCGCTGTAGATGCGCAGGCCCTCGGCAAGCTTTCGCGCCATGATCTCCAGCTGTTCCGGCGTGACGAACTTGCCGAATGCAGCGGCGTCGAGCAGTTGGCGGCGCACGTCCTCTACCTGCATCTTGGCGAAATCGAGTCGACTTAACTCGGGCATAGCCCGACCCTACCGCCAATCGAACAACTGTTCTAGCTCGACGCGAGCTTCCGCTGCCTCTCCATCCCCTGGCGTGCGTGATCGGCGGCGATCCGCTGCAGTGCAGATGTAACGTTATTCCACTCAACGCCTCGAAGGCGTCGACGGCCAACTATCTCGGATTCCGCCCGCTGGTCGC # Right flank : GCGAGCGCGGCAGCGGCTACCTCACCCTGCACACCCCGTTGCGAACCCTCGCATGGGCGAT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGCAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //