Array 1 1256131-1257139 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053482.1 Thiothrix subterranea strain Ku-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1256131 36 100.0 33 .................................... GCTTTTCAGTCGCCTTATTGCGCCCCATGCTGG 1256200 36 100.0 35 .................................... TCACGAATTGGTTTCGCACTTCGGTTTTTACTGAT 1256271 36 100.0 34 .................................... AGTAAACAATGCACGGGTATACAATACGCGGGTT 1256341 36 100.0 33 .................................... GGATTGCCGTTGTGTGCTTGCTTTGCGAGATTA 1256410 36 100.0 32 .................................... AGCTCAAATTGGGTGCGCCACGCATATACTTG 1256478 36 100.0 35 .................................... TCCGCAACCCTGTTGCGAATTGCCCAATCAAGGGC 1256549 36 100.0 35 .................................... AATTTCGCTGCGCAGATTGTCTAAAATACCCATAA 1256620 36 100.0 34 .................................... TTCTGCCGATTTCCCTAGCAGGGGGAGAGAATAC 1256690 36 100.0 31 .................................... GACTAGATACTCTGTACCCGCTACATTGTTG 1256757 36 100.0 32 .................................... TCATGTTTCAAGTATGAATCCACTTGTCCCTT 1256825 36 100.0 32 .................................... ATAACTGTCTCGACAAAATTAAAATAATCTTG 1256893 36 100.0 34 .................................... TTTTGAACAGACTACAGTCATTAGTCTGGCAAGT 1256963 36 100.0 36 .................................... TATACCGCTACAGGCTTATTCCTGCTTAGGTGTCTA 1257035 36 100.0 33 .................................... CTTAGCAGCTTGATTGCATCAGGAAATTCCTCT 1257104 36 97.2 0 .........................T.......... | ========== ====== ====== ====== ==================================== ==================================== ================== 15 36 99.8 34 TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : CGGTGCGTGGCAAGCGCCAGATTAGTTTGGATAGTGACCCGCCACCGGATTTGGCGGTGGAAATCGACATTTATTCGCCGACAGATCGGGCGTTGTATGCGGCGTTGGGTGTGCCGGAGTTGTGGATATACGATGGTAAACAGTTGGTGATTTGGGTATTGCGGGCGGGTGAATATCATGCCGCTGAATTTAGCCCGCATTTTCCGGGGTTGGCGGTGCGGGAAAAAATCCCTGCGTTGCTGAACTTGGCGGAACGTGAGGGGCGCATGGTGGCGATGAAGGCGTTTCGCGCTTGGGTGGATGAAAATCCCCCCTGCCTCCCTTTTGCAAAGGGGGGTTAAGAGGTGTAATATTGACCTACTCACACAGACAGAGGGCTGTGTTGCTTGCTTAAAAACCTAACTTGATCAGTTTTTTCTCAAGACAACTTTTTATACAGTGAATTTTCTGCTAAGGGTCTCTATAACGCATTGATTCAAAAGGCTGATTCGACACGAGCC # Right flank : CTTCTGATTCATCACACCCGACATCTTTTATGTCTGAACCATGATTTTTAGGATTAAAGGATTACCATGATAAGAGCACGTGCAGTAATCCTACTAATCCTTTAATCCTAAAAATTCCAGTTCAAGACAAAAACAATACAGAAAACCTCATTAAAAACAATTAGAGACACTATTCATTACCAATATATTAAGTCTAAAAACGTAAATAAAAGTAGTCAGACTATATTTATTTTATAAACAATAGTGATAGCTCAACACCAAACAATAATTAATCGAGTCTGCCCCCTTGATTTATGCTTAAAATCCCCGATAGCTTGCGATTAACGCCGGATAGCCAAGGGGTTTACAAGGCAGCGTTGCACGATGCGTGGGAATTGGCTGCTTGCCATTGTGATGCGGCGATACGGGTATTTTGCGATGAGAATCAAGAGCGTATGAAAGATTTATTGAGCATCCGCAACCATTCGATTCTCGCGCACGGTTTTGCGCCCATTACCGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1258875-1260021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053482.1 Thiothrix subterranea strain Ku-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1258875 36 100.0 32 .................................... TGTTGTAACGTTTTAAGCAGCGTTCCAATTCG 1258943 36 100.0 32 .................................... ACGATGCATACAGCAGCCCGCGCATCTCCGAA 1259011 36 100.0 31 .................................... GGTGCGACTGAAGAAGCCCTTCTTGCTGGGA 1259078 36 100.0 33 .................................... AATTGGGGCTTGCAAGATGCGGGATAGAAACTT 1259147 36 100.0 34 .................................... GTGTGCGGTCTTCGTTATTAAGCTCGATAGCATC 1259217 36 100.0 35 .................................... TCGGATTCAGGGATGTCAACCCAGATCACATCAGT 1259288 36 100.0 35 .................................... GAGGAAGAAAGAAAGCAGGCGTAAGAAAGAAAGCA 1259359 36 100.0 34 .................................... ACAGGGCTTTCTCTGCTCGTTCGAGTTTTGCGGT 1259429 36 100.0 35 .................................... ATAAATAACTCTTGTTTATACGCTTTCTCATCCCA 1259500 36 100.0 34 .................................... GGCGGATTGAGCTTGTTGCGGTAAAAAGAGGGGT 1259570 36 100.0 31 .................................... TAGAGCCCCCCTGCCCTTCCGGGAACAACCC 1259637 36 100.0 34 .................................... GGAAGGGGGGTGTTTCAGCAGCGGGGAAGGGCGC 1259707 36 100.0 32 .................................... TTATTTCCTTCACCTTATTCTTGCACTGCTTG 1259775 36 100.0 33 .................................... TACCTTCTCGTAATGCTCCCGCGTGCGCCTGAT 1259844 36 100.0 35 .................................... GTGTTTTGTTTTCGGGTTGTGTGTTCATGATCAGC 1259915 36 100.0 35 .................................... TTGGCGGCGTTTGTTGCTTATGCGTTTGAACGTAT 1259986 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== =================================== ================== 17 36 99.8 34 TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : AGTCATGGATCAAATTTGGCGCTTTCATGCCGCTCATGCAACTTGTACAAGTCATATCATATCAATGGTGTCGACCCTGAAACCCAACATAAGGTTCGTTTGTTTAATCCACGCGATGATGAATGGAGTGAACATTTCATGGTAAATACAAAAACTGCGGAAATCATTGGATTGACGGAAAATGGCAGAACAACCGTCCTTCAATTAAAAATGAACAAGCCTTCCCAGCTTGCCGCCAGAAAGCAGTGGATGCTGTTGGAACTTTTTCCGTGACTTGTATGCTTAATTTGCGATAACAATATCAACAGAACTGCTGAATATTTATTCATTTTTCAAAAAATCATTGTAAAATCAGCACACTAACACGCAAAACCTGAGCGTATCGCTTCTTTAAAAACTTATCTTGTCGCATTTTCGCCCAAGGCAACTTTTTATACAGTGAATTTCCTGCTAAGGGCCTCTGTAACCCATTGATTAAAAAGGCTGATTAGACACGAGCC # Right flank : CTCTTTCATTACAAAATCTTTTAGTCCGAACTAAGATTTTCAGGATTAAAAGATTTCCAAGATGCCCACTTACATCCCACTAATCCTTTAATCCTAAAAATCCCAGTTCAAGACAAAAATCAAAGAGAATATTTATGATTAACATATTAAGTCTAAAAAACGCAGGAGATTCATAGCCTTTAACTAACTGGAGAAAAGGTTATGGGGTATCTCAAAAAACCCAAAACACACAGTGAAGCAAAACTGTATTTTGATGCCATTGATCAAGATGTTAAACCTCGCGCCAAGCGCTGCCCTAAAGGTCTTGCTAATGCGTGGGATGACAAAATCAAGGCGTGTTATCACCATAAATGCTGGAAACGTCACCGTGTGACGCAATACAAATAGTGATGCGCTGCATCTCCCTTCGGAGGTGCAGTTTCACCACCTGCTATTTTTAAAGCATTAGCTTGCTGATAATAATGGGTGTGATGTGTGGCGGAAACTTGATCCGGTCATCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1268814-1269480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053482.1 Thiothrix subterranea strain Ku-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1268814 36 100.0 32 .................................... GCTGCCGTCGGCGTGGATATTGGTTGTGGGAT 1268882 36 100.0 33 .................................... CCGTGTGAATCGCACGATTGATTTAAGACGTAC 1268951 36 100.0 34 .................................... TCAGGTTTAAACAAATCATACATCGCATTAGTGA 1269021 36 100.0 33 .................................... CCGTGTGAATCGCACGATTGATTTAAGACGTAC 1269090 36 100.0 32 .................................... AAGGCTAATTTTGCAGCATTGAACGGTGTATT 1269158 36 100.0 36 .................................... TTCTTGCTTTCCGCGCCATACGCTACCGCTTCCATT 1269230 36 100.0 36 .................................... TTCTTGCTTTCCGCGCCATACGCTACCGCTTCCATT 1269302 36 100.0 34 .................................... ATAAAACCTTCTGGAATTTCATCAATTGATGTAT 1269372 36 100.0 33 .................................... CCCGCTGTTACTGAGAGTTTGCCGTTGATGCAT 1269441 36 86.1 0 .....................T..CCC.C....... | CC,G,G [1269465,1269473,1269476] ========== ====== ====== ====== ==================================== ==================================== ================== 10 36 98.6 34 TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TAGGTTGTGAACGGGATGATGCTCATGCCTATTATCTGGAAAAACCGTGTTTGTTGGTGGAGGTAGATTCTAAAGCGACTGCGTGGAAAAACTTCACCGAAAAAGTCATTGCTTACCAGAAGCTGGCATCGTTGCAGGTTTACTTAATTGTGGCGCAAGATCAACCGTTGGTGACAATGTTTTACCGCGATGCAGAAACGGGTTGGGAAGTAGCGCGATTTGATGATCTGGAACAAGCACTAACCTTACCTTGCCCTAACTGCACATTGACACTGGCTGACATTTACGAAGGGATTGATTTTACCCAACCTGCTGAATAATCCTTCCATTAACGGCTAAATCATTGTAAAATCAACCCATTAACACGTAAAACCTGAGCGTGTCGCTTCTTTAAAAATTCATCTTGTTACATTTTCGCCCAAGACAACTTTTTATACAGTGAATTTCCTGCTAAGGGTCTCTGTAACCCACTGATTCAAAAGGCTGATTAGACACGAGCC # Right flank : CGCAAAATCTTGCGTCTCTACGACAGATGCGATTAGCACGATAGATTAAGATTTTCAGGATTAAAGAATTACCGTGATAATCCCACCATCATTCCTGCCCATCCTTTAATCCTGAGAATCCCAGTTCAAAACAAATTCCAAGCAAGTTTCGCCACTCCCCCTATACGCCCACATCCTCCCCTGCTATCATTAATTTAACTTATTAATAAAAACAGCACGGGGCTTCTCATGGCAACACGCATACACGCTACCATCGCCGGTTCGATCTTCGCGGGCATCGGCTTATTCTGGGTACTCGGCACCGCGATTGAAGCGTTTGGCATTTACCAAACCCTCGCCAGCATCGTGCTAACCCTCGCACTCGCGGTGTTCTACCGCATCGGCTACAGCGACGGTAAACACGCCTGCTACATGAACGCCAAACCCGGTGACACCACACAACCACGCGCCGAACCGCTGCGCCGCGAACCCCGAATGTAAACGCCCCCCAACACTGACAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 3173646-3177214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053482.1 Thiothrix subterranea strain Ku-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3173646 29 100.0 32 ............................. ATAACCGGAATATCAGCCGACTACGCCCTAGG 3173707 29 100.0 32 ............................. TTGAGGTGGCAGCATGAACAGCGTGATTGCAA 3173768 29 100.0 32 ............................. GCTATAGGATTGTTTTCGGGGCGCATGTAGAA 3173829 29 100.0 32 ............................. CCCGCGAAGATGATGCAAAGCTGTTGTCGGCA 3173890 29 100.0 32 ............................. ACTTTTTACGTCTTAACGAAATGATCGAAAAA 3173951 29 100.0 32 ............................. GTGTTCTAATGGCAGCACTGCAACAGCCTGAT 3174012 29 100.0 32 ............................. CATGAACCCGCTGGGTGCGCCTGAGTACCGCA 3174073 29 100.0 32 ............................. TTGGCACTACGTCCGTGCAATGTAAACAACGG 3174134 29 100.0 32 ............................. ACGTTTGCCGCCATCCAACAACCACATCTGCG 3174195 29 100.0 32 ............................. GCAGTGAGAGCGATATACCGCTGAATGCTACG 3174256 29 100.0 32 ............................. CAACAGAGACGCAGGATGCGCCTTGCTGCGGC 3174317 29 100.0 32 ............................. ACCTTGCTCAGCGGTATGTCGGTATTGGTGAG 3174378 29 100.0 32 ............................. CGCACGGATAGCGCACTATTCCGCTGATGCCG 3174439 29 100.0 32 ............................. GCTTCATTCCCACCACAACACTTCCCGACATT 3174500 29 100.0 32 ............................. CATGGTGGCTATGTCTGCCATTTTCAGCAATG 3174561 29 100.0 32 ............................. CATGATTCAATTCGCAGCTAGAAAGATGTGGA 3174622 29 100.0 33 ............................. GGGCTGTGGTGGAACGGCTTCGGCTGGATACCC 3174684 29 100.0 32 ............................. CACCCTATACCCCGCTGGACATTCATCATCAC 3174745 29 100.0 32 ............................. CCACATCCATCAGGTCTAACGGGCGACGTTCG 3174806 29 100.0 32 ............................. CGTCTTAGTGCTTACCGAATAATTGTCACTAA 3174867 29 100.0 32 ............................. TCGTGGCACTGCCTGATCGTGTGGGTGTCGCC 3174928 29 100.0 32 ............................. AAAATTACATGGTGACAACCAGCGGTAGCCCG 3174989 29 100.0 32 ............................. GGTATAGCTTTGATCGGTAAAGACACCGCCAA 3175050 29 100.0 32 ............................. GCCAACGCCCAAACTATCGTAATGCCAACGGG 3175111 29 100.0 32 ............................. CACTGGTACAGCAACGCGCTGAAGCCGACCTG 3175172 29 100.0 32 ............................. GCAGCAGACCGCGAAAGAATGCCACTATTGCC 3175233 29 100.0 32 ............................. GTTCTGGTGCGTAGCGCCACATCTTAAAACCC 3175294 29 100.0 32 ............................. TTAAACTGGCTCGATGCAACGAGCGCTTAAAA 3175355 29 100.0 32 ............................. CCTTTTAGATTTCCGCTAATGAGGGTTTGGGC 3175416 29 100.0 32 ............................. AGAGGTTAGCTTAAGAGTGGTTGGCTTACTAT 3175477 29 100.0 32 ............................. CCGTGTAAACCGTGTAAACGTCTGTATGGTTA 3175538 29 100.0 32 ............................. CCTCAGTGACACCATCCATCTCATACGGTGTT 3175599 29 100.0 32 ............................. TACGCCGGATGAGCGCACTTGCTCCAGAAAGG 3175660 29 100.0 32 ............................. TGTCCATTTACGCTCACCCGTCACAAACAAAT 3175721 29 100.0 32 ............................. TTTATGCCATAGATGATGATGAACCTGCTGGT 3175782 29 100.0 32 ............................. GTTTCAGCCGTACCGGTAGGTGACAAATGAAA 3175843 29 100.0 32 ............................. TCAGGCAGCCGCACCGCCGACGGTCGGGAAAT 3175904 29 100.0 32 ............................. CCGTCTACCAGACGGTCATTGGCTAGTTTGGG 3175965 29 100.0 32 ............................. CTGATTGGATAACGGTTGGTTTCGATGATGTG 3176026 29 100.0 32 ............................. CCCTTGTCAATTTCTGGGGATGTGATGAACTG 3176087 29 100.0 32 ............................. TCGGTGGGGAAATGCCCAACCTGTGGCGGGAA 3176148 29 100.0 32 ............................. CTTGGAGGCGATGGCAGTCAGGTTGTTTTCCA 3176209 29 100.0 32 ............................. CACTTTTGCGAAGCGAAACGCCAAAAAAACCC 3176270 29 100.0 32 ............................. ATAATTGCCCCAATAATTAACTGCGACGCTGA 3176331 29 100.0 32 ............................. GCGCAGGTCGACTGGGGCATAGGTGGTGAGAT 3176392 29 100.0 32 ............................. ACACAAATGTACTCAGTCGGCAAACGCTGTAT 3176453 29 100.0 32 ............................. GCTGATCCGATGATGAGCAAGGTGTATTTGCG 3176514 29 100.0 32 ............................. TTGTTGATTGCTGCCCGCGCTCAAATGAAATA 3176575 29 100.0 32 ............................. GTGGCGAGTTCCTGCATTGCCAGCACTATTGT 3176636 29 100.0 32 ............................. GCTCGTATTTCCGTCTCGATTTCGTGCATGAA 3176697 29 100.0 32 ............................. GCTCTTAGTCTTGCTGGAGCATACGCCTATGC 3176758 29 100.0 32 ............................. AAAGCTACCTCGCAACCGCCATTAACCGCACA 3176819 29 100.0 32 ............................. TGAAACTGCTGAGGTTGTGGGAATGACACCAA 3176880 29 100.0 32 ............................. TCAATTGCCTTAAATTCTTGACCGGGAGAAAA 3176941 29 100.0 32 ............................. CTGACATACGACAAGATGGGTCTTGTAAAAAA 3177002 29 100.0 32 ............................. TCAATTGCCTTAAATTCTTGACCGGGAGAAAA 3177063 29 100.0 32 ............................. TAATAACGCTGCCTGCCGGGGTAACGGGTTTC 3177124 29 100.0 33 ............................. AGTTGCACCGAAAGATTAAATCAGCCTGTGCTA 3177186 29 93.1 0 .................T.......G... | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.9 32 GTGTTCCCCGCGTCTGTGGGGATGAACCG # Left flank : AGTTTGCATTTTCTGCGTAAGGAATTGGGTGGTTCTTCTATTGCTGATACGGTCAAGTATTCGCTTGTGGTTGCGGCTCGTTTGCTGCAAGAGAAAAAGTCTCACGAAGGTGGCAAGATGAAGGCGTTGCTAGACAGTGATTTTATCGGTAGCGGTGAAGGGGCAGAGGATTTGTCCGTCAATTACAAAGAATACTTGTATCAAGGGTTGAAGGAACATTCGCGGTTGGCTACCAGCATTTTGCGCGGATAGATGCGCTAATGGGGAAGTATGCTGATTTGTCGATGGATTTGGCTGATGCTTCTTTGGTAATTTTGGCAGAGGAATTGGGGCATGGCAGAATTCTTTCGACTGATCAGCGTGATTTTAATGCATATCGGTGGAAAAATAGCCATCCCTTCACTAATTTGCTGTTTCAGGGTGGGTGAAAAGTGAGCGTTAAAATCGGTAGAATTGAGAAGTCCATTTTTTGTTTTGTGAATCAATGAAATAGAAATGGT # Right flank : GTTGTCCTTACCAGATTGTTAAACCGCCAAACCACAAGGCAATAAAATCCAATTCCTTCGCACTTACGTATCCTTCTGTGATGAGCAAGTTGCAGGTATGTGAATGCCGCGCTTGACTCCCTGTTTCCCAATTTCAATCACAATAGGTGGAGAATGAAGATGAATACGAAGTTTATCGCTTTTGCTTTTACCACCGCGCTGGCGGCTTCTGGTGTTGCCTTCGCTGCGGAGCAAGAAAAAATGGACATGGGCGATCTGTCGGTTTCCGCCAAAGATCAGGATACATCCGGCGGCACGGTAACGGCTGACAAAATCATGGCAGCGGCGAATGGCTGGCTGGTCGTGCACCGTACTGATGCTGAGATGAAGCCCGGCCCCGTCATTGCGTATGCTCCCTTGAAAAAAGGTGAAAACAACGAAGTGAGCGCAATCCTGACCGAGCGAGTCGCAAAAGGCGACAAGTTGATGTTCATGCTGCACGGTGAAGAGGGTGGCATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //