Array 1 28461-30857 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIE01000053.1 Phocaeicola dorei strain CFPLTA003_2B NODE_53_length_31665_cov_83.391908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 28461 33 97.0 33 ................................G TATACCTGTCTTCTGTCCCTGAATTTATAAACC 28527 33 100.0 32 ................................. CAAGATGCTATCCCTGTAATGGGTGCTAATTT 28592 33 100.0 33 ................................. ACGGACAAAAGATGCGTTTTTCAATGCAACAGA 28658 33 100.0 32 ................................. AAACGCTATAAATGATATAAACGAACTGGTAA 28723 33 97.0 32 ................................G GAGAATTACACATGGAGGTCTTTATTGAGATA 28788 33 97.0 32 ................................C TCCATACCACCCCTTTACAAATGTGATAAATT 28853 33 100.0 32 ................................. TCGTCATTTAAAGCGGAAATAAACCAATTGAA 28918 33 97.0 36 ................................C GGAGCAATTTACGCAACCTTATAAGCCTACACCGGA 28987 33 100.0 33 ................................. CGGTTTTGTATGACAATTCTATGGTTAGTAAGA 29053 33 100.0 33 ................................. TGAGATAAGACTGTATAAGGATTTTGGAGATGC 29119 33 97.0 33 ................................T CTTTGTAGATATGTTTTACAGGTCTACAACTGA 29185 33 97.0 33 ................................G GAAAACCAGCAGAAGCCCTATACTACTTTATGG 29251 33 97.0 32 ................................T GAAAACATACTGTACGATTTTCTACTATCTTA 29316 33 100.0 32 ................................. GCTATGAGAAAGAAATACGCTAAAAAACAATT 29381 33 97.0 32 ................................G ATGAAATACTTGAAGCTAACAGGGATGTGCTT 29446 33 100.0 32 ................................. TGTCAAACACGCCTGTAAACCATTCTACAATA 29511 33 100.0 35 ................................. GCAGCTTTGCTGTTTCCAATGTTACAAGTTCTTCG 29579 33 100.0 31 ................................. AATCAGGTATATGGATATCCAGATTATCCGG 29643 33 97.0 33 ................................T TTTGATTTTATCTGTTGATCTAAACCTCCTATA 29709 33 97.0 32 ................................T ATTTCATTTGCACCGTTGGATAATTTTGTAGG 29774 33 100.0 33 ................................. TGTCTGCCTTGCTTATTTCGGTTGCCAGATTGG 29840 33 97.0 33 ................................G TAGACTGATTGAAATCTTCACCGATAAGGGTGA 29906 33 97.0 32 ................................C GTCCTCCGGAACAACTGGAGGGTGAAGCCTTT 29971 33 97.0 33 ................................C AACAGTTGGGGGTGTCCGTAATGGGGCGTTCCG 30037 33 97.0 33 ................................T CTGACAGTAATATAGATACTTTAGCAGTAGATA 30103 33 97.0 33 ................................T CATGATGCGATACCGTATCAGTGATATGGCGGA 30169 33 100.0 33 ................................. AAAATGGTCTTACAACAACAATCTTATAGGATG 30235 33 100.0 32 ................................. TTATGCCGTTATGTTTAATGATTTTAAGCCAT 30300 33 97.0 32 ................................T CCCGAATATCTGACATATTATGCTGTGATATC 30365 33 97.0 31 ................................C CTTGAAAAGAGAAGATATCATGTTGCTGTTC 30429 33 97.0 33 ................................T TACTGGGAGATGATATCCGATCTGGAGAACGGA 30495 33 97.0 33 ................................T TTATTAGAATGATACACAACAACCAGCAAGAAG 30561 33 97.0 32 ................................C ATGACGACCCAAAGCATAATAATCTTAACTTA 30626 33 97.0 32 ................................T CTCCTCCGTGTATAGTTGCATTTATATCTATT 30691 33 93.9 33 .............................G..T CGAAATAGCGTAGCGATCCTTGCTCATCACAAG 30757 33 100.0 33 ................................. CGCAATCCACCACTATCATAGCTCGGATGAACT 30823 33 93.9 0 ....................A.........G.. | TA [30842] ========== ====== ====== ====== ================================= ==================================== ================== 37 33 98.0 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTACTATACTATCCCTTGTTGCTTATTTGTTATGTTATTGATTATTAATGTATTGTTATCTGTTTGTATCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGGATGAACCGCAAAAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //