Array 1 79362-77694 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOIR01000003.1 Kocuria sp. 257 NODE_3_length_445957_cov_47.5328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 79361 36 100.0 41 .................................... GCCCAAGAACATCGCCAGAGATCGTGTTACTTGTCCTGGAA 79284 36 100.0 41 .................................... GGGGGCTGGCAGCAAATCCATGACCAGTTCGGATCACAGTC 79207 36 100.0 37 .................................... GGGTACAACTCGATCACGGTCAATAACCACGACGCTA 79134 36 100.0 36 .................................... AAGCATGTGGGGCGTGTGTCTCGTGTGGTGACGGCT 79062 36 100.0 39 .................................... CGCAAAGCACGCAAACAGTTCCTCGCCCAGTGCGCAGAA 78987 36 100.0 38 .................................... GCGGACCCTACCGGGGACCAAGCAGCCGCACGCGCAGA 78913 36 97.2 42 ...................T................ AGATTCGGGAATGACTACGACTCTTACCGGCATACGGCACCG 78835 36 97.2 36 ...................................T CGGGGAATGACTGTTCAGCCATTAGTTTGTCTCCCT 78763 36 100.0 38 .................................... TGGGATGCTGATGGCCGCCCTGTGGGTAAGCCGTGGTC 78689 36 100.0 39 .................................... GCAGTCTGAGGCTGATTTGTCGAACGGTGAAGCTTTCAT 78614 36 100.0 34 .................................... GGAGAGCGAAGAGGTCACTGCCGAAATCCTCGAC 78544 36 100.0 37 .................................... TGTGAGAGTCATAACCACCTCCTTCCTTTCTAGTACC 78471 36 100.0 37 .................................... CAATGCCAATCCTTCGGGTTCTTCGCCCGATGAATCG 78398 36 100.0 38 .................................... TGGCCGGAATCGCAGAAGAACCGCCCAGCTTCGCCCAG 78324 36 100.0 41 .................................... AGGTCGATCCTCTCGGCAGGCGAGCGGTCCTCGGTCCTCAT 78247 36 100.0 39 .................................... ATGCAGGCTTGTGGGGAGTTCTTTGATGCGGTGATGACG 78172 36 100.0 39 .................................... GGGAATAAGGCGCATGCTGACGCGGATGCCTTGTTCACG 78097 36 100.0 36 .................................... TAACCGCAGGTACGACCCCGGAAACCGGTACCCGAC 78025 36 100.0 40 .................................... CTGGAAAGAGCCGCCCGGTTGGACGGCTCGTTGTGTTCGG 77949 36 100.0 37 .................................... AAGGCGGGGAATGCGAACCAAGAAGGTTCGCATTCAA 77876 36 100.0 36 .................................... CAGACTCGCCCCGACCGTAACAAGGACGCTTCCTAA 77804 36 100.0 39 .................................... AAGTGTGTGCCTGTCCTGCCTGTACTTCATTGACAGACG 77729 36 94.4 0 ...............................A.A.. | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.5 38 GTCGCCTCACCTTCTAGGTGGGGCCTTCGTTGAGGG # Left flank : ATAGTTACTCGATGAGCCGAGATGATGCTAGGCGTTTCCTGGTTACCTACGATATTCCGAGTGATAAGAGGCGAGCTCGAGTCGCAACTGAGCTGGGCCATTATGGTGATCGGGTCCAATACAGCGTATTTCTCTTCGACATATCCCCAGCCGCGATGACACGCCTCAAGTCGGGGATTCTTGAGATGATCAATTCGTCTGAAGACTCCGTATTGGTATGTGATCTTGGCCTTGTCAAAAAACTGTCTGACCAGACCTTTCAATATCTCGGCATTGAAAGGGAGGACCGAGATGACTCGCTGATGATATATTGACCCACCCCGTCGTGCGAGGGCTTCATTGATGCGAGATCTTCGGCGAGCCGTCGCGAAGAAAACTACTAGTCACACGCTAGTTTCAAAAGACTCACCCGGAATCGTGCTCTTCTACACTGTCAATTACACCGAGCCCTCGCATACCGACGCGTATGCCCATATGGCTGTATAGTAATAAAGCCTGCT # Right flank : ATCGGGAGTCCGTCCTGCGCCAGTCTATAGCCCCGTTGCCTGCGGGCCTGTGCGGCCTGAGAGTGGTGGTGTTAGAGATGGGCCGGGCCCACCCGGTTGTTGCCCGGTGAATCCGTGGTTACTAACGGAACTAGCACCCGCATAGGACACGTAACAGGTCAGCAAGAGCCCGAATCACTGATGCGATGCCGATCAGGGTCCGCACCAGGGTCGGGCTTTTTGCTTCCCTCCAGTCCTGTGCTCAGGTGTATGGCCCATGAGCCTGTCACCTCCGTATCTGACCCCCGCTCTCCCCGGCGCAGGTCTTGGTTAAGTCCCGCAGAGTAGTCGCCTAAAAGGTGACCACCATAAAAGCGCCCCGTCACCCCAGGCTTCCCAGCCCGAAGACCCCCAGGGCCAAGACGAAACCGACGACGCCTATCAACGTCTCCATCACGGTCCAGACCTTGAGCGTAGTGATTTCGTCCATGTCGAGCAGATTCCCGACGAGCCAGAAACCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCACCTTCTAGGTGGGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 176896-178429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOIR01000003.1 Kocuria sp. 257 NODE_3_length_445957_cov_47.5328, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 176896 36 100.0 37 .................................... CCATTGCTCGCAATGTCAGCGCGGCCCCAGGCGGTAG 176969 36 100.0 35 .................................... GACGCTGTGAGGGGTTATGCGGCCCTTTTGGGTGA 177040 36 100.0 33 .................................... CCCAATATATCACGCACGTACCGTGGGTTCGCT 177109 36 100.0 34 .................................... GACGACATTTCCGTGCCTGCGCCTTGCCTCAGGT 177179 36 100.0 36 .................................... TAGCTTAACTGAGGTGTTGGTCATCAGCGCAGACCG 177251 36 100.0 36 .................................... ACGAGAGAACGAAAACAATGGGTAGAATCAGAGCGG 177323 36 100.0 35 .................................... GCCGCCAGGGCCAGAGAGACCTGATCGTCTCCGGA 177394 36 100.0 35 .................................... CGATCTGGTGTTCATCCGCGGAGGCCGCGAACACC 177465 36 100.0 34 .................................... ATGCAACTGACTGTGGACGGTGATGAGGTGAAAT 177535 36 100.0 38 .................................... CTCCCCGGCCCCTCCTACTCAATGGACTTGGTCAGTGT 177609 36 100.0 35 .................................... TCGGCAGGTAGCGGCCGAATTGGTCACCGATCAGT 177680 36 100.0 35 .................................... CTGTTCCTGACGGAGGATGTGCGGGACTTGTTCTA 177751 36 100.0 35 .................................... ACGATGATCGAGGATTACACGTCACCTAATCAGTC 177822 36 100.0 36 .................................... TGCCGTCCACGCCGGGGCTCTGTACTGGTTCCAGTA 177894 36 100.0 35 .................................... CCATCCCGGCGACCGGGTGCTGACCCGAAACAACA 177965 36 100.0 36 .................................... CGGAAACGGCGGCGACCAGGCTTCCTGCAACTCCGG 178037 36 100.0 35 .................................... GCTGTTTACAACCTTATATGTCGCAAGATTTTATG 178108 36 100.0 36 .................................... CGGCGGCTTGGGCGATGCCGGTCCCGCCAATGAGGA 178180 36 100.0 34 .................................... GGGTGCGATCAGCGGTGTCCGTAGCGGCGTCCGG 178250 36 97.2 37 ....................G............... CGGAACGTTGTCTGCCACGCCGAGAGGCGTGAGCTAA 178323 36 100.0 35 .................................... TCCACACTCATTCGCCGCCCTGATATCCGCACGGC 178394 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 22 36 99.9 35 ATCGCCTCGCCTTCTTGGTGAGGCCTTCGTTGAGGG # Left flank : GGATTGTTACCCGATGAGCCGCGACGACGCCAGACGGTTCCTAATAACGTATGACGTCCCCAGCGACAAGAGACGCACACGCATTGCAGACGAGCTGAGTCATTATGGTGACCGCATCCAGTACAGCGTGTTTTTATTCGATGTGTCCCCGGCAGCAATGACACGCCTCAAGTGCGAGTTGCTTGAATTGATGGACTCGTCCGAAGACTCTGTACTGATCTGTGACCTTGGACTGACCACAAGAGTATCCGACAAAAATTTTCAGTACCTCGGTGTCCAGAAGGAAGATCGAGACGACTCCATCATGATCTACTAGCCCGGCCCGCGCGAGAGCTCCAGCGCTGTAGATTTACCGGCGAGCCGTCGCGGAACATTTTCACTAGTCAGGAGCGCTTTTTGGGTGGTTGATCTGTTTTCGAGACCGTGCAGGCAGGTGCTTTGGACGAGCCCTCGCGGGCCAGTCCGGGTTCGTCGGTCTCCGTAGGGTAATATTGACCAGT # Right flank : GCCCAAGATACTTACGTATCTACCCCAGAGGGGGGCGGAAGATGACGGATTGGTCAGGAACCATGCAGGTGGTAACGCCGCCGGCGCAGTACTCCAACCGGTGTATTGTGCCGTGCGGGCGTGGGATCTTCTCATTGCGGCGGTCTGCCATGTCCCTGATCGACTCCCTTGCCAAGGGTCGGTGGAGCGATAGTCGCGTTCCGTGGTGGGGGACCTGTCATCGTACAATGCCGCATATGAAATCGGGGAGGCGTCTCCTGCCGGAACGAGTTGAGCCCTGCACATAATGTGATGCCCTGTGCAATGACATCACATCATATTGTGCACCATTGATAACGCTGATGGATGGGTCAGTGGGTCGCCCAGTCAGGACTCTTTGAAGCTACGCAGATCCCGATAGAGCGGGGTCATCTGATATCCCCCAAATACTCTTTGATCCGATTCTTGTTGATTCGCCAATAATCTTCATGATGTGGGGTCCTTTCCATGCGATATCGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCCTCGCCTTCTTGGTGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //