Array 1 98209-98416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJBO010000002.1 Providencia stuartii strain PRV00025 PRV00025_c0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 98209 28 100.0 32 ............................ ATATGCGCATCCCAAGCTTCTGGGGGGCATGT 98269 28 100.0 32 ............................ GCGTTTAGGCAGCATCATTTTGCCGTCAGCAT 98329 28 100.0 32 ............................ CATCGATTTAAGATATCGCTGAACTGCACATT 98389 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TACAAGCCGCCAATATCGCCAATTATTATGGCGTTATCAGATAAAGCAAAGTTTATCTCGGCGAGGTAATTGCTGGGATAATGCGCCGATGGAGCGATTTTTTCGAAGTTTAAAGACAGAATGGGTACCCATTTTAGGCTACCGTAATTCCATAGAAGCACAGCAAGAAATAACACGATATATCATCGGGTATTATAGTCAGCTTAGACCCCATCAATATAACGGTGGCTTAACACCCAATGAATCAGAACGATTGTATTGGGAAAACTCTAAAACGGTGACCAATTTTTGTTGACCACTCCAAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGCGCTTTCCAATAAGCTGTACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAATAATAAAATTAATCGGTGAGGCAGGATGAAGCTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAACATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGAAGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGTGAGATGATAGGCTGTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36764-36556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJBO010000029.1 Providencia stuartii strain PRV00025 PRV00025_c0029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36763 28 100.0 32 ............................ CAATCATTTGAGCTGATTGCGCACCGCAATTA 36703 28 100.0 32 ............................ GCCATTACCCTCTCTGACTTCGATAGCAAGTT 36643 28 100.0 32 ............................ TGTGTGAGGTTGATTTACTGGTGCTTGATGAC 36583 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTTTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGACTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTCTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTACCCTTTAAATTTTTAAAGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : TACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACATGGAGGTTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAATCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18366-18771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJBO010000013.1 Providencia stuartii strain PRV00025 PRV00025_c0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 18366 28 100.0 32 ............................ ATTAAACAGCACCCGAATTCCATCTGCATCAA 18426 28 100.0 32 ............................ TGCAAACATGGCATTTATCATTGTCATCTTTT 18486 28 100.0 32 ............................ TCTACGATGCGTACTGGTAAGACTGCTAGTGC 18546 28 100.0 33 ............................ ATCATCACGAATACACCAGGCTATCGAGTAAGG 18607 28 100.0 32 ............................ CAGAGCAAGCGAAAGCTAAAGAAGTTTATGAC 18667 28 96.4 49 ..............G............. TAAGACGCGGGTTCAACTCCCGCCAGCGCAGTAATAAAGGGAAAATAAA 18744 28 67.9 0 AC....ATTG.......A..A.....C. | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 94.9 35 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGTTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAACTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGCGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATAAGGCCAACGGCTTAGAAGGCCGTAGGTCACATACATAAACGTATAGGCAGTTATCCATTTATTAATATAGATTAAATAAACAAGTATTAACATGTACGTTTAAATACAATTAATAAGTTATTTTTGATAAAACGCTTTGCGATCAGCTTCCCAAAATCACCATGTACTCTTTACAAACAATGAACAGCTATAGACAACACTTAAGTTAAACTGTATTTAAATAGTCATATGATTTAACCAAGTCAATGGAAGGCTAATTCAACATGGATGACTTTTCTCCCGCTGATTTAAAAACTATCCTTCATTCCAAGCGCGCTAATATGTACTATTTAGAGCATTGCCGCGTTATGCAAAAAGATGGTCGAGTTCTCTACTTCACCGAAGCGAAAAATGAAAACCTCTATTTCAATATTCCCATTGCGAATACAACAGTTTTGCTATTAGGCACTGGCACCTCTATTACTCAAGCTGCGATGAGAATGCTTTCACAGGCTGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27738-28306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJBO010000013.1 Providencia stuartii strain PRV00025 PRV00025_c0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27738 28 100.0 32 ............................ TGACAAAGATTATTTTTTCAAGCCTTCATTTG 27798 28 100.0 33 ............................ ATCACGGAAGTGATTGACGCAAAGTTACGCTAC 27859 28 100.0 32 ............................ ACGATTTACATATAGTGATATCCGTCTAACAT 27919 28 100.0 32 ............................ GTCCGCATTTGCTATTGGAGTGTCATCAAGAA 27979 28 100.0 32 ............................ TTTAGTTGACCATTTCGAATATTGCATAAAGT 28039 28 100.0 32 ............................ TTAATAATAGGAGCTCTATCTAGCCATTGCCA 28099 28 100.0 32 ............................ CAGAGATATACCTGTTCCGCTCCCGTAAATGC 28159 28 100.0 32 ............................ TTGCTGAACCTCTTCATGCACTGAGTCTCGCC 28219 28 96.4 32 ...........T................ GTTGTTGTTCGTGTTGAACAAGGCGAAACCGA 28279 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAACTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGGCTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AAATGAAACATCTACTTGATTTTATAATATTTTTCAAGGTGACCATTTTGGCTTGTTCTATAAAATACAAAGGTAGCTTCTAATTCTTTATTTTCGTCCAAAGTCACCGCTAATAGAGGCGAGGATTTATCAATCGGCTTTGTAAATACAACTGGTTTATATGAGACACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGCTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTTAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTGTGCGTTGCGGCTTCTTTTCCGTCAGTTAGATGGCCCATTATCCGGAGGAGCGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTGTATTATCAACGATAGCCCTTGGTCAACCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 101006-101453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJBO010000013.1 Providencia stuartii strain PRV00025 PRV00025_c0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 101006 28 100.0 32 ............................ ATTAAACAAGGCATCAATAGCCATTTGCTCAT 101066 28 100.0 32 ............................ TGACTTCGGGGCGATGTGATCATGGTGCGAGT 101126 28 100.0 32 ............................ TTAAAGCAGGTGCGCGCTTCTATTTTCGCGCT 101186 28 100.0 32 ............................ ACTTAGCTCAGGAATTAGTAGTATTTATGTCA 101246 28 100.0 32 ............................ TATTGCCATGCCAGCTGACGCACCACCAAGAC 101306 28 100.0 32 ............................ ATACAAACAAGGCTCACAACCTGCCTCAACTG 101366 28 100.0 32 ............................ TCTATAAACACGTTTTGGATAGCAATTATCTT 101426 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAATTGCGTAATATGTAGGTCAGGCAGGGCGCTGTATAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGTGCTGAATAAAAAGTGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTTACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : ACAGATAGCAGTGTGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGTGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGCCGTTATGAAACGTTCGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGACCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAGCTATTGGATTTTACCTAGAGGCAAGACCAATGACCCAAAAACAAAGACCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGTTGTAGAAACATGGGGTATGGGGCAATTCCTGCGGAAATCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 119928-120076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJBO010000013.1 Providencia stuartii strain PRV00025 PRV00025_c0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 119928 28 100.0 32 ............................ GGCGCATTTTTTGCAGGGGCAATCGTTGTTTT 119988 28 100.0 33 ............................ CTGAAACTATCAGCTATTTAAAGCGACAGGGAT 120049 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAACCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTTCCTTTAAAAATAATAAGTTATATTATGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : ATTGGCGATATCGCACTCATGGATGATTTTTTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGGAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //