Array 1 5216-4334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJK010000039.1 Streptomyces echinatus strain CECT 3313 Ga0436950_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================== ================== 5215 29 100.0 32 ............................. CCGGACGGCACGTGGGGCTCGGTCAGCAGAGA 5154 29 75.9 33 .............CC....G..AT...TC CTTGGAGACGAAGTGGGCGGCCTGGGCCTTCAC 5093 29 69.0 32 ...G..C......CC....G...AGCT.. GGCTACGCCGACCACAGCGACGTTGCCCAGCT 5032 29 72.4 32 ...G..C......CC....G...T...TC CAGGCCAACGACGCTCGCAGCAAGGGTCACAA 4970 29 62.1 32 ...G.GC......CC....G.A.AGCT.. CACAAGAACCAGCTCGTTACCCACGTGGGTGC 4909 29 75.9 152 ...G..C......CC....G....CT... GAGCAGCACCGCGGCGTCGGCAACGCGCACAGGTCGTCCTCGCGCCCGCGGGGGTAGCTCCACGCTCGACCTGTCCACGGGCCAGGTCGACCGCGTCCCCGCGCCCGCGGGGGTAGCTCGACCGTGAGCGCGGGTGCGGACCTGTACCGCGC A [4886] 4728 29 69.0 33 ...G..C......CC....G..GT...TC CGGCCAGCGCGACAGCCACAGCGGAACATCGTC 4667 29 93.1 32 ...G..C...................... ACCCACCTTCTGCTGCCGCTGCTGGCGCGGTC 4606 29 100.0 32 ............................. TACCAGGGTCCCGGCACCTACCTGGGCAACGG 4545 29 100.0 32 ............................. ATCGAAGCGTTCTTCCGGTATTTCAACGACGC 4484 29 100.0 32 ............................. AACACGAGATCTCCGGGCTTCGCTTCGGACTC 4423 29 100.0 32 ............................. AACACGAGATCTCCGGGCTTCGCTTCGGACTC 4362 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================================================== ================== 13 29 86.0 42 GTCTTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CTCGTGAGACCCGGAGCGGCTGCAGGCAGCGCACCGGGTGCCAGCCGCGTGAGTTCGGCGGGATCGGCGTCGTGATGCCACTTCATCGGCACGCACGGCGACATCATCACGTTGAACACAGAGAGTAGCTCCAGCCGGGACGACGGCTCCCTTGGACCGGGAGCTCTAAGACGGCAACTGCCTGCTCAGTTAAGGCCGTTGACCTTCTGCGGATCAGCGACAGAGTCAACTTAAAGTGAGATGAGACGGGCCCGCAAGCGACTGCTCTAACTGTCAGTGGTGGCCTGTACGGTGGAAGCGGAAGCGGTCTGCATACCCAAAAATCGCCTCTAAGTAGGTCCGCGTTCCAAGACCGACGCTGACTCTGCCGCAAGCGGAGGTAGTGTCCTCCGACTCCACCAGCACCTTGAAAAATGAATCAATAAGGCCACGCGACACAAGGCACTTCCTGAGAGCGGAGGCGAGCTGCCGAACCGCAAGGTCATCTGCCTTCAGCGGAT # Right flank : AACAGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGAGATCTCCGGGCTTCGCTTCGGACTCGTCTTCTCCGCGCGAGCGGAGGTGAGCCGTTGGTGGTGCCGTCGGGGTGGGCGATGCCGACCTCTTCTCCGCGCGAGCGGAGGTGAGCCGAACTTCTGGCTCCGCAAGATGGAGCGCCAGTAGTCTTCTCCGCGCGAGCGGAGGTGAGCCGTAGCTGGCCATGCCGTCGACGGGTGCCGCGGCGTCTTCTCCGCGCGAGCGGAGGTGAGCCGCCCAAGCCGATGGTTGAAGAGACGGCAGCAGAGTCTTCTCCGCGCGAGCGGAGGTGAGCCGCCGGCGAGGCTCCCCCTCCTGACTGACCAGTTGTCTTCTCCGCGCGAGCGGAGGTGAGCCGTGGGGCCAGGGCCTGGAGATGTGCTGCGGGCGGT # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:-0.94, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13970-16159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJK010000039.1 Streptomyces echinatus strain CECT 3313 Ga0436950_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13970 29 93.1 31 .C...........A............... AACTTGCCCGTGAGGCGGGCGCCGAGAGCCA 14030 29 86.2 32 TA.........T................A CCCTTGCGCATGGCGGAAAGGACCAGGACGGC T [14032] 14092 29 86.2 32 .......T.A...A.........A..... GTGGGACAGCCCTTCTTGTAGCTGCATACGCG 14153 29 89.7 32 ...T...................A....A TACCTCGATGAGCAGGCGCCCGACACCCTGCT 14214 29 96.6 32 ........T.................... ACGTCGGTGACGTCCGCGTACAGGTCGGGGTA 14275 29 96.6 32 ...........A................. AACCGCAGGTAGGTGTTGTCAGGCGTGGTCCG 14336 29 96.6 32 .........................A... CTCCGCTACCAAGGCATCACGCGTAACGCCCT 14397 29 86.2 32 .A.........A........A.......A GACGGCGATCAGGTTCGCGTCACGTACGCGTT 14458 29 89.7 31 ..G........AT................ TATAGGGACTTGACCGGGGTGGCTTGGGCGC 14518 29 93.1 32 ...........A.A............... TCCCGCAGGTGCCGGTCACCCTCGATGTCGAG A [14528] 14580 29 100.0 32 ............................. GCCACCGACACCACCGGCCAGCCCATCTTCGT 14641 29 96.6 32 ........................C.... ATTTCGTGGTGGAACTCGTCGCCCTTCCGCAG 14702 29 96.6 32 .........................A... ATGATTAGGCCCACGATGACATTGCGGACGCC 14763 29 86.2 32 ..G.....T........C.....A..... ACGTGGCAGTGGTGGCGGTCCGTCCTGCAGAC 14824 29 89.7 32 ..AT..........T.............. TAGGCGACATTGCCCTTGGTGAAGCGGCGGAT 14885 29 89.7 32 .....G.......A.........A..... TACGCGATCCCGATCGGCGCGGACGGCCATAT 14946 29 93.1 32 ..G................G......... CTGACGGCCGCGCTCGCGACGAAAGGAGCATG 15007 29 96.6 32 ..............C.............. TCGTCAAGCCAGTGCAGGACGTAGAGTCCGTC 15068 29 93.1 32 .............A...........C... TTCGACCTGGCGATGGCGAAGCTTGCCCCGAA 15129 29 93.1 32 ..............T...........T.. GCCACCGACACCACTGGCCAGCCCATCTTCGT 15190 29 96.6 32 .........................A... TACAGGTGCGCCGGCGCGTTCGGCACGTAGCC 15251 29 93.1 32 .......A.....A............... GTCACGCTGGAGACGCTGTCAGGTGCCGCTGA 15312 29 96.6 32 ......G...................... TACAGGGGGATGGTGCTGGTCTTCAACTCGAT 15373 29 86.2 32 .C........T........G...A..... TACTTGGAGGCCTGCTCCGGGTAGAACCAGCG 15434 29 96.6 32 .......................C..... GTCGCGATGGGCATCGTCGGCATCGGCGTGAC 15495 29 100.0 31 ............................. ATTGCACGCGTGCTTGGTGTGCACGTCGCCG 15555 28 75.9 9 A.GT...T.....AG.....-........ AGCATTACG Deletion [15592] 15592 29 82.8 32 ....A....T...............AT.A CCGGTGGTGCCCTTGGCGAAGTCGGTCTCGAT G,T [15598,15604] 15655 29 89.7 32 .C...........A...A........... TACCTCCCGTGGAAGGTGAAGACAGACCACAC 15716 29 96.6 32 .C........................... ACGGATCTGTCCACGGCGGACGTCGACATCTC 15777 29 89.7 32 ...............AG...........A CCCTTGCACATGGCGGAAAGGACCAGGACGGC 15838 29 89.7 32 .......T.A.............A..... GTGGGGCAGCCCTTCTTGTAGCCGCATACGCG 15899 29 96.6 20 ...T......................... TAGGCTCGGCCCACGTCGAT Deletion [15948] 15948 29 86.2 32 .AAG.........A............... ATGGGCACCGGCACCAACGTCCAGGACCGGGC 16009 29 100.0 32 ............................. TGCCAGCACAGCGACGACGGCGGGCCCACCGT 16070 29 100.0 32 ............................. GACCACCATCCGCACGTGACGGCGAGGGCGCA 16131 29 75.9 0 ...................G..ATCA.TC | ========== ====== ====== ====== ============================= ================================ ================== 37 29 91.9 31 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCAGGCACGCCACCGACCGCTCCCCACCCACATCGATCCCCGAGACACCGCCACCATCCGCAACCTCATGGCCCACACCGTCCAAGTCGACCACCGATGGCTCCAAGGACGCGGCCCCGAAACCAACACCCCGACCGGCTGGCGGGACATCGCCGCCCTCCAAGACGTCCTCCTCCTGCCACAGCGCGTCACCAGCACCGGTGCTCGGCCATACCAACTCAGCGGCAAGACCCACCACCTGTCCCGACTCGACGGCCTCGTACGCGACTGACTCCAGCCAGACCAGCACCATCCCCCAGCCCACCCAGGCCAACCGCACAAGCAGAGACAGGAAGCCCGCACCACCGCCAGATGAGCCAGTACCTGCTCCTTGAAAACTGCATAGAGCGCCCCCGTACACGACGGCAAACCACACATCGAAGCACACGCGGACCAGCGACTCCCGCCCTCTCCGCACAAGGTAAACCGGCGCGACTGGAGGCAGTACCGGTGACGGACGC # Right flank : CTGGAGGGCGCATGACGCACGAGCGTCCGGCAGACCGAAACCCTCGCGGCCTCCCGCCGGAGCGGCCTTCAGACCTCGATGTAGGCGACGACCACGACTGTGCGCAGGGCGGTGACGAAGTACAGCACGCGGACGGCTTCGACCTCGTCGGTGTACTGACGCAGTGCCGGTCCGCTGCTGTCGCCGGGCAGAGGCTCACCGGCACCGGGGTCGACGGAGATGACCACCAGTGCGCGGTCCAGGGCGTGGAGTTCGGACTCGCTGGTGATGTTCTCCAGCTGCTTGGCGGCGGCGTCGGAGAAGGCGATACGGGCGCGGCGCGGGCCGTGGTGTGTGGGCATCAGGCGACGGCCGGGCGCTGGCGGGCGAGGCGGGCGAGGTGGGTTTCTCGCAGGTCTTCCCACGGTGTGCAGTCCTCTACCGCGGGCAGGCCGTTGGCGGCGATGTCTTCCAGGGCGGCGGCGAACTCGTCGGCCCTGGCCCGGGTCTGGGCTGCGTAC # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //