Array 1 402225-403962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006929.1 Dickeya zeae EC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 402225 29 100.0 32 ............................. CGCGCAGCAACACAAAGAGAGCTGGAGCAGGC 402286 29 100.0 32 ............................. GCGTTGATTGAATTACCGAAACCTGATGTCAA 402347 29 100.0 32 ............................. CTGATGGAGATAACCAACCGCGTCGGGATTGA 402408 29 100.0 32 ............................. CACATTCGTCAACCAAGGCGTTCCGAGATTTG 402469 29 100.0 32 ............................. TTCTGGCGCGTTCGCTATGCGGTCGGGTATTG 402530 29 100.0 32 ............................. CAGGCCACCGATATCCTGCGCCCAGTGTGCGA 402591 29 100.0 32 ............................. TCATGCCACCGGAGGTCCTTAAGGCCCGCAGA 402652 29 100.0 32 ............................. TTTACAATCCGCCGCGTCTGCGTTTTGCGACC 402713 29 100.0 32 ............................. CTTAACGCCGATTTGACTTTCGTTGCGTGCGA 402774 29 100.0 32 ............................. ATACGAACCGTTTTACCCGTACCAACTTCTGT 402835 29 100.0 32 ............................. GCGCGTGTACACCGGGTCGCTGGTGTCAACCA 402896 29 100.0 32 ............................. GCAAAAGAATGGGGTGAGGTTCAAACCGACGC 402957 29 100.0 32 ............................. CGACTTTAGTAACTATTGGGATCAAGGGGCAG 403018 29 100.0 32 ............................. CGTGCGGAATTGATGCGCAGGACGTGGAGCAA 403079 29 100.0 32 ............................. GCATGATGATGACGCAATTGATTCAAGAGGTT 403140 29 100.0 32 ............................. TAATAGCGCGGCGACTTGGAGAGCAGGAACAC 403201 29 100.0 32 ............................. AGCGCAGAATAAGAAACACCCCCACAGGACTA 403262 29 100.0 32 ............................. TCTGAAATGTTCTTCAACTGGCTTACGCACAC 403323 29 100.0 32 ............................. AAACAACCCGTTCCATTTGGCGTTAACGGGCA 403384 29 100.0 32 ............................. TGCTGGCGGGCATGCCCATTGGTGCCGTTGCG 403445 29 100.0 32 ............................. CCAACGGCAGCACTTTCACAGCCACACAGATA 403506 29 100.0 32 ............................. TCATTACTTACATGGTCGATGAAATCATCGAA 403567 29 100.0 32 ............................. CCAGGACAAGCGGGGAAGAGAGTCATTCCCGT 403628 29 100.0 32 ............................. AAAATGCAGTGCTGGGAAAAGTCGCAAAGCAG 403689 29 100.0 32 ............................. AGCGATAAATCCGTTTCGTACTGCGCCAGCGT 403750 29 100.0 32 ............................. CATGGGATTTGTAAACGCACCTATTCGGGGTA 403811 29 100.0 32 ............................. CGCAATTATACTCAGGCACAGGCGGAGGAGAT 403872 29 100.0 33 ............................. TGGCCACCGCATTGGCGAACTGGCAGAAATCCC 403934 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTACTGGAAGTGCGCGCCGGGGTTTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGGCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : ATAAATAAATCGGGCTCGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGCGTTAAAACGACTGCCAGTCGTCTGCGCTGGCCGAGGTTTTGGCGGCGGCGGGTTTTTTGAGTGCCAGTGTTTTCGCGGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCTGCCAGATTGTAAGACCCGCCTCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGTTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 669453-672475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006929.1 Dickeya zeae EC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 669453 29 100.0 32 ............................. GCTCGATTTGCAGCGCAATCCAACGCTGAATC 669514 29 100.0 32 ............................. GTGATCTGGTCAGGGCGGCATTGCGCAAGTTA 669575 29 100.0 32 ............................. GATGGCTTACATTTTCTTACAGTCATGTTAAA 669636 29 100.0 33 ............................. CACTACTGCGATTGTTATCATGCTGATTCTCCA 669698 29 100.0 33 ............................. CGGGCTGAGGATACGCTGGACTATTTCCTTGAC 669760 29 100.0 33 ............................. CGCAATCCGATGCGTCTATCCACATTATTAGCC 669822 29 100.0 32 ............................. CCGGATTGCTCATTACGTTTGACTCTGGCAAC 669883 29 100.0 32 ............................. CGCACGACGTCTTTTAACACATTTGCGATGTG 669944 29 100.0 32 ............................. GGGATTCGAGATCCACTTTTGGGGGGTAGATG 670005 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 670066 29 100.0 32 ............................. GGTACGGCTCTCCACAGGAGATGGTCGACGAT 670127 29 100.0 32 ............................. CCCAAACTCATCGGTGACGCGGTTGATCAATA 670188 29 100.0 32 ............................. TGATGCTCAAACAGCTTCAGGTAGATGCGCTC 670249 29 100.0 32 ............................. CCATGTTCAAGGCTCGCGTGGAATTCATGCGG 670310 29 100.0 32 ............................. ACTGTGACGTTACGGTCAGGTCGTTTGCGCCG 670371 29 100.0 32 ............................. CGGAGTTGAGGTCACGAGGGAACCGCTTGGCT 670432 29 100.0 32 ............................. TTACTTTCCACGCTTCAGGCTTCGGACCAAAT 670493 29 100.0 33 ............................. CTGGATGAGTGAGTTATCAGATAAATTCACTAC 670555 29 100.0 32 ............................. AGCGCAGAATAAGAAACACCCCCACAGGACTA 670616 29 100.0 32 ............................. TCTGAAATGTTCTTCAACTGGCTTACGCACAC 670677 29 100.0 32 ............................. AAACAACCCGTTCCATTTGGCGTTAACGGGCA 670738 29 100.0 32 ............................. TGCTGGCGGGCATGCCCATTGGTGCCGTTGCG 670799 29 100.0 32 ............................. CAGGACAATTCATATTGTCCCGATGTCCATTC 670860 29 100.0 32 ............................. CGAGGGGTATTAGCAGGGGCCAATAAGGTAAG 670921 29 100.0 32 ............................. AGCACGACGGAGAAACTGAAGACGACGGCGCA 670982 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671043 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671104 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671165 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671226 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671287 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671348 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671409 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671470 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 671531 29 100.0 32 ............................. TTACGTGGCATCGAAACAGGGCCACGCATCGA 671592 29 100.0 32 ............................. CAATCGATGAACTGATTAATAGTCTTAAAAAA 671653 29 100.0 32 ............................. TTACGTGGCATCGAAACAGGGCCACGCATCGA 671714 29 100.0 32 ............................. AGACCGCGGACTTATTCCCCTTTCGGGTGTTG 671775 29 100.0 33 ............................. CATTTCTTTCGCTTCGTTAATATACCAATCGTA 671837 29 100.0 32 ............................. TGGTTATATTGAGGTCATCGAAACGAGGTTGA 671898 29 100.0 32 ............................. GGGCCATTCGGCCCTTTCTTATCCCCACAAAT 671959 29 100.0 32 ............................. CGACCCGGAGAGTATCAATTGCTGGTGGCGCA 672020 29 100.0 32 ............................. GTCGTCGTGTTTCGTTCGATTGATGCACGCGG 672081 29 100.0 32 ............................. AAAAACAGTCCTATGGTGTAGGTGATCGCCTC 672142 29 100.0 32 ............................. CCGGGGTTATTACTCGCAAGCTGGATGGAAAA 672203 29 100.0 32 ............................. CCAAGTGAATCTCGAATCAATTCCTAAATTTT 672264 29 100.0 32 ............................. GCGTCTGGCAGGGGCCATACGACCCTGATAGC 672325 29 100.0 32 ............................. GCTTTTGGGCAGGGTGCCGTGGCCAAATACAA 672386 29 100.0 32 ............................. GAGACAGATACCTAATGAGCGTACCTGTGTGG 672447 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGAGCGCGCACCTTTGCCATTCTGATGCTCTGTCAGGCGTCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAATCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTAACGTAATAGCGCGGCACAATCCGTCGCGATGCGCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATAGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGACGACGACACTGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATTTGCATCTACCCACGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGGACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3615548-3615939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006929.1 Dickeya zeae EC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3615548 28 100.0 32 ............................ CTTCTTCAGATGCATCTCTCATGTCACAGTAT 3615608 28 100.0 33 ............................ CTGATCGTTACTGTCGATGGCTTTGGCGAATGC 3615669 28 100.0 32 ............................ TTTTCCGTCAGCTCTCGTCTACAGCCTGAGAT 3615729 28 100.0 33 ............................ TACTGAAGTCTCTGGCGCTTGCCGCTGCTGTAT 3615790 28 100.0 32 ............................ GTTACCGGCATCCCCGCTACCTGATGTACTAC 3615850 28 100.0 32 ............................ TGGCAAAAAGTTTTTGTCAGTGTGCATTTAAC 3615910 28 78.6 0 ...........T.C.........G.TGG | GG [3615931] ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGAAATCCCGCCCATAGCGATATCACACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACCGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGCCCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGCCCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGTTACTGGCGTTAAAACTACGCTAAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCATGGATGGGGCGAGTAACCGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACTTAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAACAGCCCGGCTATTTACCAACAGCCCAAAAACGCTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //