Array 1 3106-412 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3105 30 86.7 35 T...T.G...A................... AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA 3040 30 100.0 35 .............................. AACAACATTTATGAATACAAGATCGTCGTCCAACT 2975 30 96.7 37 ....................T......... TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA 2908 30 100.0 36 .............................. AGGTGTTTGACAACACGAAACAATGGGAAGACATCA 2842 30 96.7 36 ....................C......... AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT 2776 30 96.7 37 ....................C......... TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG 2709 30 96.7 37 ....................T......... AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC 2642 30 96.7 37 ....................T......... AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT 2575 30 96.7 36 ....................T......... TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG 2509 30 96.7 36 ....................T......... AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 2443 30 96.7 37 ....................T......... ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 2376 30 96.7 37 ....................T......... CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 2309 30 96.7 36 ....................T......... TATCTCAACCTGTGACTGGCCGGACGGCTAGATCAG 2243 30 96.7 39 ....................T......... AAACAGATGTCCCCCTAAAGCTTGGCGACATCATCACAA 2174 30 96.7 35 ....................T......... AGCTCGCACAGACAGAGATACCACAAGCGATCGAG 2109 30 96.7 37 ....................T......... GTCGTGGATATCTGCATCTCTCTCCTCTGTACTACTC 2042 30 96.7 37 ....................T......... AGATGTATCCGGATGGAAGTACCAAAGAGTTCGACAA 1975 30 96.7 36 ....................T......... GTTCATACAAATCTTTCATCGTTCTCGCAACATCGC 1909 30 96.7 37 ....................T......... GATGAAGACGTACTTCGTGAAGAAGATGCTGGAAAAA 1842 30 96.7 38 ....................T......... CAATTGCAGGAATATCCTCCACCTCATACGCCTTCACA 1774 30 100.0 38 .............................. AGAGGTGATCATTTCGAAGAGACGGCAGAGGGAAATAG 1706 30 100.0 37 .............................. AAAACAAAAACAAAAATATATATATAGAAGATAGTAG 1639 30 100.0 36 .............................. AAGCACACCTTACCATCTATTCTTTTCATTGTGGAG 1573 30 100.0 36 .............................. CAATTGAAATTGAGGCGAGGCATCTGAGATTATCGA 1507 30 100.0 37 .............................. TGAGTTCACGAACGTGCTACAAAGAGTAATAGAAGCA 1440 30 100.0 36 .............................. TGTTTTGTCATTATCAGAAGAAGATTTTATACTCAA 1374 30 100.0 36 .............................. GGAAACGGGCTTGTGATGAGCGTTTGCGGGCGTTTC 1308 30 100.0 35 .............................. GTTGTTCTAAGTCTTCAAAAGGATTTACAAGTTTA 1243 30 100.0 37 .............................. AAGGGAACAGAAGGCAAGCAATACCTACGAGATGCGG 1176 30 100.0 36 .............................. ATATAATAAGGAAATATGATTATATCGGATTCGAGA 1110 30 100.0 35 .............................. TAACATCACCACCTTTGCGATTTCTACAACGTATA 1045 30 100.0 37 .............................. TTGTATGATCGCATGTCTTTGTAAAAGAAATAATCGA 978 30 100.0 37 .............................. TTTTCCAGTTGAAGTTGTCTGAGAAAAGGTAAAACTT 911 30 100.0 37 .............................. TCAGGGAACACCTCGTGCCTGAACGTGGGCTTGTCGC 844 30 100.0 36 .............................. TTTTTATCAACGAGAATATGCAACGTTGATATGGAT 778 30 100.0 37 .............................. GAAATTTCGCCAGCAAGTTGCTTGATGCTGGAGTATG 711 30 100.0 37 .............................. CGGTGTATATGGATGTTGGAGAGGACAGTGCTCGCAT 644 30 100.0 37 .............................. TGGGAAATGTCCCCCGAAGACTGGAAAAGGCTTATAT 577 30 100.0 38 .............................. AAACTCTCGACGATGCACAGCAGAACATCTCCGACAGT 509 30 100.0 38 .............................. GATTTTGGGTGTGGATGTCCCCGTTAACAGATCACAGA 441 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 98.3 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : GGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATCTGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATTT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 369732-369170 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 369731 30 73.3 32 A....TG.G..........TGC.....G.. GATCAAAAGGAGCACAATTCACGAGGATCACT 369669 30 100.0 37 .............................. ATCTTCCTTGCGAAATACTCAGAAAATGGCTCTCCTG 369602 30 100.0 37 .............................. TCGACAATGCACTGATTGACTCGGTTTCAGACACCTA 369535 30 100.0 39 .............................. TACCTACCCAGCGCTGTCTTTTCCTGCGGACTCTTCCAC 369466 30 100.0 37 .............................. CAGAGAGGGTTTTCAGAGGATCCTACAGACAAGATTA 369399 30 100.0 36 .............................. TTGGTGTACCTCGTCGAAGGATTGAATGTTATCGCT 369333 30 100.0 37 .............................. GATGTTCTTTCCTAGATGTTCCTCAATCTCCACAAGT 369266 30 100.0 37 .............................. TAATTCAGGGCATTGATGACCTGATCCACGATTGTCT 369199 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTGTTCTCGTTGCAATTGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTTTCCGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGGATTCTTCTGGAATTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTTTGGGTATTCTGGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGGTAGATCCGTTTTCTGTGATTATCGCGTTTGGAGTTTCAGCAAGTGTTGGATTGTTCTTCGGATTCTATCCTGCGTACAGAGCCTCCAGGTTGAGCCCGATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGTAAATATAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTTATTTTGTATCAAAATCGCTGAGAGACTTTTTGAACTGAGGCAAACTCAGGAG # Right flank : CCATTGAGTTCAAAAGGAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGGATTCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 3 397134-396568 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 397133 30 83.3 39 .....TG.....A.......G.G....... AATGAGGTTATTGCTTTTGAGTCGTATCACTGGTTTAGA 397064 30 96.7 36 ....................C......... CGAGATCCGATACTGGGATGAGAATTTAGCACAGGT 396998 30 96.7 39 ....................C......... AAATACGATACTGAAAATGGCAAAGAAACGCGCTCACGT 396929 30 96.7 37 ....................C......... TAGGTGCAGTGGTTGGATTGTAGTAGCTCATACTAGT 396862 30 100.0 37 .............................. TGTCAACGCGCTACGGGCAAATGGTGCTTGAGGTTGA 396795 30 100.0 37 .............................. CTTCCAGCTCAGTACAGGACGAATGCCGTCTGGATCA 396728 30 100.0 35 .............................. ACATGCAAAATCCCAAAACACTCCTCCTTCTCTGG 396663 30 100.0 36 .............................. TTCTCCAGTACACACCACCTTCTACATCAAACCTTC 396597 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAATCACTTCTTCTCCGTTTTCATGCAGCATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCAAAAACAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATTGGAT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGTTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAATCACTTACACGTCATAGATTACCGCAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGTTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 4 409295-410923 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 409295 30 93.3 39 ......G.............G......... CTGAAAGAGGGAACGAATGTGTTTATGCGACGAAAACTG 409364 30 96.7 35 ....................C......... TTTGGGAAGAGGAGGGAGAACATGAGGATAAGTGA 409429 30 100.0 37 .............................. TAATCAAAATGTATCCAGACGGAACATCTAAAGAATT 409496 30 100.0 37 .............................. TTCCAGTCCAACCGTCGACTGAGTGTGAATGACTCCC 409563 30 100.0 36 .............................. CACCCGTGATGTCTATCGTGTTGCCTGTCGTTACCG 409629 30 100.0 36 .............................. GCGTTTCCACTCGTATCTATCGCTCTCACACGGAAG 409695 30 100.0 42 .............................. TTGTGCCTGTAAAGGGGACAGTAGATACTGAAAGTTTATATT 409767 30 100.0 35 .............................. CCGACAGCGAATCAGCGAATCCCCACGATGGTGCG 409832 30 100.0 39 .............................. AGGTGCAATCGCAGGCATCTGGAAGCTCCAGAACAAAGG 409901 30 100.0 36 .............................. CAGAGTAATGAGAGGAGTCATATTTGAAATCGATGA 409967 30 100.0 36 .............................. CCGGAAGTAGTAGGGTTCGTCGCCGGGCTCTGTGAT 410033 30 100.0 36 .............................. GTCTGAACTCTGCCTTGAACAATGCCTCCGAAGAAT 410099 30 100.0 36 .............................. CATTTGTAGCACTATCATAAGTCAGAGTTTTCCCCG 410165 30 100.0 36 .............................. AGGAAACGAATACGAAATCTGGATAAGAGAAGCAGA 410231 30 100.0 35 .............................. TATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 410296 30 100.0 38 .............................. TTTGAGCCTGATCGGGATAGCAGAGAACTTCACGTGCT 410364 30 100.0 36 .............................. GTGTCCTTCAGTAGCAAATGGAGCTACAGGAAGAGC 410430 30 100.0 37 .............................. ACTTGAAAGTGCTTGAAAAAGTTGTGGAATAGCGCTA 410497 30 100.0 35 .............................. TGCGAAGGATTGTGGTAGAGCATATGAAGTATATA 410562 30 100.0 37 .............................. ATCCATTCACAATCCCGACATTGTGAAGCCAACCACG 410629 30 100.0 36 .............................. AAGTACACATCAACCATTGTCCCTTCTGTTACCTGG 410695 30 100.0 35 .............................. TCGATGCGATGGGGTGATAGGGTGCTTCGATGGAA 410760 30 100.0 37 .............................. AAGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 410827 30 100.0 37 .............................. GAAGAAAGGAGGATGAGGAAGATGGGAAAAGAGAACC 410894 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 25 30 99.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAACGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCCAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACCTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGAAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGTTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAATCACTTACACGTCATAGATTACCGCAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGTTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 5 1520476-1519912 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1520475 30 73.3 37 TG...TT.......G.A..C.C........ TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC G [1520468] 1520407 30 96.7 36 ....................T......... TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA 1520341 30 100.0 36 .............................. GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC 1520275 30 100.0 36 .............................. GTATGATATGTTCCGCAAACTACAACAAGAAGTCCT 1520209 30 100.0 36 .............................. TTAGAAGCCGTTTCTAACCTATAAGATTAGAAAGAT 1520143 30 100.0 35 .............................. TCAATGCGTGTGCGGAAAACGATTTTGCCGTCAGG 1520078 30 100.0 36 .............................. GGACAATTTGAAGGTTTGAGGGAGGGATGAGTATGA 1520012 30 100.0 41 .............................. GGAAGATCCTCGCTTAACAATCCAGAAAGCAGGGGAACTGA 1519941 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 96.7 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAAGAAACTGGTACCGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAACATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCATCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGAATTTT # Right flank : CCGTTGAGTTCAAAAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTGGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCGTTGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTCTTCGTTACCGGTAATTGCATACTCTGAATCAACCTTCCAATGCCCGGTACACACAATACCTACTTTGTGAA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 6 1631789-1632016 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1631789 31 100.0 35 ............................... ACAAGCGTTGTGCCATCACTACTTGTTCGAAGCCC 1631855 31 96.8 34 A.............................. AGACGTTCCTGTCGCTGGTAGTGTCGAATATTCG 1631920 31 100.0 35 ............................... TTGTGTCTGAAGAATGAGCATCGAGTTCTACACGA 1631986 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 TGTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : AGCCAAGGGAAAGACACCGGAGGAAATCTACTCAACAATTTTGAAAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGCGATGGAAGCTTCAAGGGTTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAAAGAAATAAAGAAACTCTCGGCGATTTCTCCGAACACCACGGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAGTACAGAATAAAGCTTCCACCAACGATCTATGGATTCGAAGAGCTCCGATGCAAAAACGAGAACTGTATCACCAATCCCGCACACGGTGAAAATGCTTCACCTTCCTTTGTGAGAAACGAAAAAGGACAGTTCATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTTGCGAAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTATTTTATAGCCAAGCTTATCTGGACTCGGTTGG # Right flank : CCCGTTGAGTTCAGGAGAATTTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTTTCCATAAACCATTCTAACATACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAAACAGAAAATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATATTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTAACTTCCTGAATTCAAATCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCCAGTGCCAGATACACGTATCACCCACTTTGTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 7 1779875-1780701 **** Predicted by CRISPRDetect 2.4 *** >NC_000853.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1779875 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 1779940 30 96.7 37 ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1780007 30 96.7 37 ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1780074 30 100.0 36 .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1780140 30 100.0 37 .............................. AGAAAGTAGTCGACAAGTTCGTTGATTGTCTCGTCGC 1780207 30 100.0 36 .............................. AGAGCTCTCCCGGGCCGTACCATCCAGGCCACCCCA 1780273 30 100.0 36 .............................. TACAGAACATTGCACTGGAAGAGAAGAAGCAGGAGA 1780339 30 100.0 37 .............................. AGACATCTCGATCCTGATGAAGTAGGAGGGATACTTA 1780406 30 100.0 37 .............................. AAATCAGGATTGAACCTGACGTAGAAGCTTTGTACAA 1780473 30 100.0 37 .............................. ACTTAAAGGAGGCAAAAAGACAGGAAAGAAGGGACGG 1780540 30 100.0 36 .............................. AGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 1780606 30 100.0 36 .............................. AAGGAACTCAGGACGATTCTCTGGATCGGTCTCAAG 1780672 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.2 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCCTTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTTAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAATCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //