Array 1 3482-2538 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYQ01000008.1 Lactobacillus helveticus strain Y-10 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3481 29 96.6 32 ............................C ACGGTACCTTTTGGGACTTCTTGGCTGGTGTC 3420 29 96.6 32 ............................C TTCTGACGGCGTAACTGAATCTCAACAAATCA 3359 29 100.0 32 ............................. AGTGATTGCCGTGTAGTTCTTATGACGATTGC 3298 29 100.0 32 ............................. ATTAACCATTAAATCAACGCTGTGTGTTCCTC 3237 29 96.6 32 ............................C TTAGAGTTAGTCATAGTCCATGTAAACCGCGA 3176 29 100.0 32 ............................. CTGTTGTACTTTTCGTCTAAAATAAAGTCATA 3115 29 96.6 32 ............................C TAGAATTGATGGATATAGTCAATACACTATTG 3054 29 100.0 32 ............................. ATGAACTTTTACATCTTGTGATATCTCTTTTA 2993 29 100.0 32 ............................. AGGCAGCTTGATAAAGTCATCAAGGGTCATAG 2932 29 100.0 32 ............................. GCTTTTAGTCACCTCCTTCAAAGCTCAGCAAA 2871 29 100.0 32 ............................. TGCAATAGCAACACCGGCCGCTTGGTCTAAAA 2810 29 100.0 32 ............................. CTACTGATCCGACTGGTTTCGCCAATTTGGTT 2749 29 100.0 32 ............................. CACTGATATAGACATCGCACGCATGGCCCATT 2688 29 100.0 32 ............................. TTGATTGCTTCATCGAAGTATTGTTTTTGCAA 2627 29 100.0 32 ............................. CAGCCGGACTTGAAGCAGCGCGTAATTGATCA 2566 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTATTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGTTAGAGCAAGGCAGCTTTTAAAGATAATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCATACAAATTCAACATCAACATTTTTTACTTCCGGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGCAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATGATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGGGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13607-13273 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLYQ01000008.1 Lactobacillus helveticus strain Y-10 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13606 29 96.6 32 ............................C TGTCTATAGATCTTAGTAGTGGGCTTTAATGT 13545 29 96.6 32 ....................A........ ATGCTCGGCTATACTATCAAGCAAGCTGTATC 13484 29 100.0 32 ............................. CTGGTAAATCTAGTGAAGCTTATAAGCGTCAG 13423 29 96.6 32 ............................C TCGTGTGATCTGCGGACCTTTTGCACCTAATA 13362 29 100.0 32 ............................. ACAAGTAAGGAATATTGACCGAATCTTTAACT 13301 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTAACTTTGGCAATCAATGATTTCTTAGCACTGATGTACTTGCCGTTGCTTAATTTTAAGACTGGAGCACTATCAGTGGGAGTGACCAACTTGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGTGTTAAAGCAGCATCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCGAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATA # Right flank : AAAGCTTTCAAGTGCTATAAATAGTTCATATATGAAATAATATTTTACAAATTATGAGGAAATGAAAATGCAATTATCTAATAAGACTTTATCCTTATGGGGTAAGAAAAATGTTAATGATGACAATGAAAAAATGTGGTTACCATTAATTGCGCATTTAATTGATACAAAAAATGTGATCAATTGGCTATATAATCATTGGATCAATGATGGTCAAAGACATATTTTGCAACGGAATTTTGAAGATGAAGATATAGTTCAAAATTTAGTGAAGTTTTTGGGATATATACATGATATTGGAAAGGCAACACCTGCTTTTCAAATTAAACAGTCATATATCCATAATGAAGATTTAGATCAGAATTTAGTAGAAAAATTATTGCGAAATGGCTTTGATGGTCTAGATAATTCAAAAATTAAGAAAATTAATACAAGTAAGACGCCTCATGCATTAGCTGGAGAAGTTATTCTAGAAAACAACGGGTTAAATGAAAGTATAG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //