Array 1 159716-158134 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLY01000002.1 Bacteroides pyogenes strain KG-29 NODE_2_length_159893_cov_27.857485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 159715 47 100.0 28 ............................................... CAACAAGAAAGCGGCCACCCCCTCCGGG 159640 47 100.0 30 ............................................... TTGTCCGGCGTAGGAATAGCGAACTCAATA 159563 47 100.0 30 ............................................... TACAGTATTTAATGATGCTGTTGTGATTAT 159486 47 100.0 30 ............................................... TACGTTCTCGCTGCATCTGAAATCGTATCC 159409 47 100.0 30 ............................................... ACCTACGATCCCGCTCAGCGGAAATTCATC 159332 47 100.0 29 ............................................... TAGTCCCTCCTTTACCATTCAAAATAGAA 159256 47 100.0 30 ............................................... TACACTCATTGGTCATCTGCTTGATGATAT 159179 47 100.0 30 ............................................... TAATTACTCTACAAAGATACTATGAATTTT 159102 47 100.0 30 ............................................... AATCATCTCATTATATGTCAATCGAAAGTT 159025 47 100.0 30 ............................................... GGGCTCGACATGGAAGGATATTCCGTCTAT 158948 47 100.0 30 ............................................... ACTTTTTATAATAGCGTTTATATCATCTTT 158871 47 100.0 30 ............................................... CGCAAGACCAGCCTCTTGAACGCTGAACGA 158794 47 100.0 30 ............................................... ACTTTTTATAATAGCGTTTATATCATCTTT 158717 47 100.0 29 ............................................... AAATTTGTAGGAACTACAAGATTCATTCT 158641 47 100.0 30 ............................................... ACAGGACTTTACTGATAATGATGGTATACT 158564 47 100.0 29 ............................................... ATTATTATTTTTATAACCTTTTCGAAAAG 158488 47 100.0 30 ............................................... TACAAAACAAAATGAGCAAAACGAAAAAGA 158411 47 100.0 30 ............................................... TCTGTAGGCAAAAGCAGAAACAAGCTCTGC 158334 47 100.0 29 ............................................... GGCTCTATCTCAATACGACTTATCTCAGT 158258 47 97.9 29 .......C....................................... AGGAAGATCCTCACAAGGAAAATAGCGCT 158182 47 85.1 0 ..............................C.GCC.G....T....A | T,G [158142,158144] ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.2 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CTTTGTGTTCCTTGCAGTACATAATAATTTCTGCAACTTCTTCTCGTGTCATCATAAGTTTTATTTTTGGGCACAAAGATACTGGTCGAAGAGATTGCAGAAAATACGTGGTTTACCGGAGGCTTACAAATTGAAAGTAAATCACAACACATCTTATAAAACAAAACGAAATGTGTT # Right flank : AAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCGGGCGTCATTTCTGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 108191-110089 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLY01000007.1 Bacteroides pyogenes strain KG-29 NODE_7_length_110260_cov_26.413237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 108191 29 100.0 36 ............................. AAAGGTGATAAAGGCGCAACCGGCCCCAAGGGAGAT 108256 29 100.0 34 ............................. GCTTTGCAGGCAACGGGTTTAAGCTCTACAAGGA 108319 29 100.0 37 ............................. ACTCGGGCGGCAAGACATACATCGGTACCTACACCGA 108385 29 100.0 36 ............................. GAGCCAAGGGTGCCGACGGCAAGACGGCATACACCC 108450 29 100.0 36 ............................. ATCACCCAGTCGAGCGACATGGAGTTGGCAGACATG 108515 29 100.0 36 ............................. AGCATTCAAGTTTATCGGCGAGGGCGGAAAGATTAA 108580 29 100.0 35 ............................. ATATAATCAGATATTTACCAAGTCATCTGACCCTG 108644 29 100.0 35 ............................. TGAGGACAGAACGTCCGGCGCCGCAATCTTCAAGG 108708 29 100.0 35 ............................. TACATCATCATCCCAGCTTTGCGGCTGCAAGAGCA 108772 29 100.0 37 ............................. GAGGTTGTTACAATGAACAAGGTAGACGTTACTGTTG 108838 29 100.0 36 ............................. CGTCTCCGCTATCTTCACTACGTATTCGAAGTCCCA 108903 29 100.0 35 ............................. GTGCGCAAGCCGCTATCACGCAGGGGAGATAAAGA 108967 29 100.0 35 ............................. ACAGAAAGAGGACGTTTTGCGAAAGAAGGTAGACG 109031 29 100.0 34 ............................. AAGTATGAATTGATTTTAAAAGTGGAACAGGGGA 109094 29 100.0 36 ............................. GAAGTCCGCATAATTAGGAGAGTACTCGTACTGCGT 109159 29 100.0 34 ............................. TGGTAACGGCTCTTTCCCCTCTTTTATCTTCTCG 109222 29 100.0 36 ............................. GATTCAGGTAGTAATATTCCGAAAGAATCAACGAAC 109287 29 100.0 36 ............................. GTATGTCGGATGCCTGGATAATGAAAAACATCGGCA 109352 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 109415 29 100.0 36 ............................. TGGAGTAGAGGGCATCGAGGAGAAGTCCGCGGCGGA 109480 29 100.0 36 ............................. GATATGCTTCAGTCAATTGGAAGTCTGCTTCCGGCT 109545 29 100.0 35 ............................. TTGCAATCTGGCGATCAATAACGGAGGTGAATTCA 109609 29 100.0 34 ............................. AGAAATATGCCGAGGAGGAGGAACGCCGCCGTAA 109672 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 109738 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 109803 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 109867 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 109931 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 109996 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 110061 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 30 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : AAACCGTTTAAAATGTGGTGGTGAATAATGTACATAATTTTAGTTTATGATTGTGGCGAAAAGCGTGTAAGTAAAATGTTGAAGCTCTGTCGGAAATATTTGAATTGGATACAAAATTCTGTTTTTGAAGGTGAAATTTCAGAGGTAAAACTAAAAGAATTAACTTTGAAAGCTCAAAAAATAATGGATATGAATACTGATAGTTTGATTATTTTTTCCGGTAGAAGTGAGAAGTGGCTTGACAAGCAAATTGTTGGGAAAGAAAGAAGTAGTATAGACAATTTTTTATAATTGTGCGTCGATGTTCTTCACTTCAAGCAGATATTAGGAAAAGCCTGTCTATTATGTTCTTTGACATTCTGAAAATCAATGTATTATAATGTTGTCGATAACCAGTGATTTTCTTATCATTGAATATCGACAAGTTTTTTAAATTTAAAATGCTCTTTCTGAAAAATATTTGATTGAAAATCAATTGCTTATTATTCCTTTAAGTATGG # Right flank : AAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTGGTAAGCCTCCGGTAAACCACGTATTTTCTGCAATCTCTTCGACCAGTATCTTTGTGCCCAAAAAGTAAAACTTATGATGACACGAGAAGAAGTTGCAGAAATTATTATGTACTGCAAGGAACACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //